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CHANGELOG.md

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Changelog

Version 0.2.10 - 0.2.12

  • Added a numpy vectorized version of finding gaps (tldr: not fast compared to the traditional version). May be needs a better implementation
  • Added NCLS based intersection operation (based on what pyranges does in their internals)
  • Added tests for intersection operations.
  • Fixed and issue when coercing IRanges containing mcols.

Version 0.2.8 - 0.2.9

Optimizing a couple of methods in IRanges:

  • Update gaps and reduce to slightly faster NumPy based operations.
  • Switch np.array to np.asarray

Version 0.2.7

Changes to be compatible with NumPy's 2.0 release:

If using np.array(obj, copy=False) replace it with np.asarray(obj) to allow a copy when needed (no behavior change in NumPy 1.x). For more details, see https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword.

Version 0.2.4

  • Support coercion from IRanges to Polars and vice-versa
  • Setting up myst_nb to execute snippets in tutorial/documentation markdown files

Version 0.2.3

  • Feature complete implementation of IRanges from Bioconductor