Data and code repository

"Natural variation in trichome-based anti-insect metabolites from wild tomato species"

Code and datasets are available

Eventually, all code and datasets used to generate the figures will be archived at the Zenodo repository (used by CERN). This will provide us with a link (DOI) that we can use in the methods section.

List of figures

Figure list

Figures

• Figure 1: Insect survival phenotypes on the collection of accessions
• Figure 2: Glandular trichome phenotypes
• Figure 3: Heatmaps of GC-MS and UHPLC-MS detected metabolites
• Figure 4: Significant metabolites in toxic-labelled accessions

Tables

• Table 1: Classification of the accessions
• Table 2: List of acylsugars significantly contributing to the RF model
• Table 3: List of volatiles significantly contributing to the RF model

Supplemental tables

• Table S1: Generalised Linear Model fitted on the whitefly survival data.
• Table S2: Cox proportional hazard model fitted on the thrips survival data
• Table S3: volatile and acylsugars identified in the stem trichomes of the 19 tomato genotypes.

Supplemental figures

• Figure S1: Survival curves of thrips bioassay
• Figure S2: Trichome photos of all 19 accessions
• Figure S3: Trichome densities per trichome type and leaf surface
• Figure S4: Frequency of metabolite detection among the accessions.
• Figure S5: Mass spectra of volatiles that were not verified by an authentic standard
• Figure S6: Detection of significant metabolites among the tomato accessions