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BlueNaaS-SingleCell

Blue-Neuroscience-as-a-Service-SingleCell is an open source web application. It enables users to quickly visualize single cell model morphologies in 3D or as a dendrogram. Using a simple web user interface, single cell simulations can be easily configured and launched, producing voltage traces from selected compartments.

Examples

You can use the application on the EBRAINS platform at https://ebrains-cls-interactive.github.io/online-use-cases.html by selecting "Single Cell InSilico Experiments". You can also follow this direct link.

Documentation

The user documentation for the service can be found here.

Build frontend/backend dev images

make build

Run dev frontend/backend

make run_dev_frontend &
make run_dev_backend &

Citation

When you use the BlueNaaS-SingleCell software, we ask you to cite the following: DOI

Funding & Acknowledgment

The development of this software was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government's ETH Board of the Swiss Federal Institutes of Technology and from the Human Brain Project's Specific Grant Agreement 3.

Copyright (c) 2022-2024 Blue Brain Project/EPFL