Chore: Bump Copier template

.copier-answers.yml

@@ -9,7 +9,7 @@ copyright_year: '2022'
 distribution_name: region-grower
 download_url: https://github.com/BlueBrain/region-grower
 init_git: false
-maintainer: Adrien Berchet
+maintainer: Adrien Berchet (@adrien-berchet)
 package_name: region_grower
 project_description: Synthesize cells in a given spatial context.
 project_name: Region Grower

.github/workflows/run-tox.yml

@@ -13,7 +13,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.9", "3.10", "3.11"]
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
         min_versions: ["min_versions", "latest_versions"]
         exclude:
           - min_versions: "min_versions"

AUTHORS.md

@@ -1,5 +1,5 @@
 # Maintainer
 
-Adrien Berchet
+Adrien Berchet (@adrien-berchet)
 
 # Contributors

docs/source/conf.py

@@ -14,10 +14,11 @@
 
 # -- Project information -----------------------------------------------------
 
-project = "Region Grower"
+project_name = "Region Grower"
+package_name = "region-grower"
 
 # The short X.Y version
-version = metadata.version("region-grower")
+version = metadata.version(package_name)
 
 # The full version, including alpha/beta/rc tags
 release = version
@@ -63,10 +64,10 @@
 # html_static_path = ['_static']
 
 html_theme_options = {
-    "metadata_distribution": "region-grower",
+    "metadata_distribution": package_name,
 }
 
-html_title = project
+html_title = project_name
 
 # If true, links to the reST sources are added to the pages.
 html_show_sourcelink = False

setup.py

@@ -1,19 +1,10 @@
 """Setup for the region-grower package."""
 
-import importlib.util
 from pathlib import Path
 
 from setuptools import find_namespace_packages
 from setuptools import setup
 
-spec = importlib.util.spec_from_file_location(
-    "region_grower.version",
-    "region_grower/version.py",
-)
-module = importlib.util.module_from_spec(spec)
-spec.loader.exec_module(module)
-VERSION = module.VERSION
-
 reqs = [
     "attrs>=19.3.0",
     "click>=8.0",
@@ -37,7 +28,7 @@
 ]
 
 doc_reqs = [
-    "docutils<0.21",  # Temporary fix for m2r2
+    "docutils<0.21",
     "m2r2",
     "sphinx",
     "sphinx-bluebrain-theme",
@@ -59,20 +50,22 @@
 
 setup(
     name="region-grower",
-    author="bbp-ou-cells",
-    author_email="",
+    author="Blue Brain Project, EPFL",
     description="Synthesize cells in a given spatial context.",
     long_description=Path("README.md").read_text(encoding="utf-8"),
     long_description_content_type="text/markdown",
-    url="https://bbpteam.epfl.ch/documentation/projects/region-grower",
+    url="https://region-grower.readthedocs.io",
     project_urls={
-        "Tracker": "https://bbpteam.epfl.ch/project/issues/projects/CELLS/issues",
-        "Source": "https://bbpgitlab.epfl.ch/neuromath/region-grower",
+        "Tracker": "https://github.com/BlueBrain/region-grower/issues",
+        "Source": "https://github.com/BlueBrain/region-grower",
     },
-    license="BBP-internal-confidential",
+    license="Apache License 2.0",
     packages=find_namespace_packages(include=["region_grower*"]),
-    python_requires=">=3.8",
-    version=VERSION,
+    python_requires=">=3.9",
+    use_scm_version=True,
+    setup_requires=[
+        "setuptools_scm",
+    ],
     install_requires=reqs,
     extras_require={
         "docs": doc_reqs,
@@ -91,10 +84,10 @@
         "Intended Audience :: Science/Research",
         "Programming Language :: Python",
         "Programming Language :: Python :: 3",
-        "Programming Language :: Python :: 3.8",
         "Programming Language :: Python :: 3.9",
         "Programming Language :: Python :: 3.10",
         "Programming Language :: Python :: 3.11",
+        "Programming Language :: Python :: 3.12",
         "Topic :: Scientific/Engineering :: Bio-Informatics",
     ],
 )

tox.ini

@@ -4,27 +4,20 @@ files = {[base]name} tests docs/source/conf.py setup.py
 
 [tox]
 envlist =
-    check-version
     check-packaging
     lint
     docs
     min_versions
-    py{39,310,311}
+    py{39,310,311,312}
     coverage
 
 minversion = 3.18
 
 [testenv]
-extras =
-    test
+extras = test
 setenv =
     COVERAGE_FILE = {env:COVERAGE_FILE:.coverage-{envname}}
-deps =
-    min_versions: Requirements-Builder
 commands =
-    min_versions: requirements-builder --level=min --extras=test -o {envtmpdir}/requirements_min.txt setup.py
-    min_versions: pip install -r {envtmpdir}/requirements_min.txt
-    min_versions: pip freeze
     pytest \
         --basetemp={envtmpdir} \
         --cov={[base]name} \
@@ -53,20 +46,12 @@ commands = mpiexec -n 4 {envbindir}/python tests/test_synthesize_morphologies.py
 [testenv:coverage]
 skip_install = true
 deps = coverage
-allowlist_externals =
-    /bin/bash
+allowlist_externals = /bin/bash
 commands =
     /bin/bash -c 'coverage combine .coverage-py*'
     coverage xml
     coverage report
 
-[testenv:check-version]
-skip_install = true
-deps = bbp-nse-ci>=0.2.5
-commands =
-    do_release.py -p . check-version
-    do_release.py -p . check-changelog --release-only --path CHANGELOG.md
-
 [testenv:check-packaging]
 skip_install = true
 deps =
@@ -78,6 +63,12 @@ commands =
 
 [testenv:min_versions]
 basepython = python3.9
+deps =
+    Requirements-Builder
+commands_pre =
+    requirements-builder --level=min --extras=test -o {envtmpdir}/requirements_min.txt setup.py
+    pip install -r {envtmpdir}/requirements_min.txt
+    pip freeze
 
 [testenv:lint]
 basepython = python3.9
@@ -108,6 +99,7 @@ commands = make html SPHINXOPTS=-W
 
 [gh-actions]
 python =
-  3.9: py39, lint, docs
+  3.9: py39, lint
   3.10: py310, check-packaging
-  3.11: py311
+  3.11: py311, docs
+  3.12: py312