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441 investigate compiling science code as library #479

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merged 7 commits into from
Nov 28, 2024
Merged

441 investigate compiling science code as library #479

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ba3be64
Library work
bschroeter Nov 14, 2024
ef24586
Merge branch '219-implement-init_wetfac-as-per-access3-jules' into 44…
bschroeter Nov 14, 2024
fbeab34
Initial library implementation. Fixes #441
bschroeter Nov 17, 2024
d4277c0
Library implementation
bschroeter Nov 25, 2024
9ffee33
Reconciled upstream changes with local branch. Library implementation…
bschroeter Nov 25, 2024
fdd0d75
Updated CMake for separate builds. Fixes #441
bschroeter Nov 26, 2024
8c83bf1
Merge branch 'main' into 441-investigate-compiling-science-code-as-li…
bschroeter Nov 28, 2024
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380 changes: 240 additions & 140 deletions CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -37,147 +37,247 @@ if(CMAKE_Fortran_COMPILER_ID MATCHES "GNU")
)
endif()

add_library(
cable_common
STATIC
src/offline/cable_abort.F90
src/offline/cable_checks.F90
src/offline/cable_cru_TRENDY.F90
src/offline/cable_define_types.F90
src/offline/cable_driver_init.F90
src/offline/cable_initialise.F90
src/offline/cable_input.F90
src/offline/cable_iovars.F90
src/offline/cable_LUC_EXPT.F90
src/offline/cable_metutils.F90
src/offline/cable_mpi.F90
src/offline/cable_namelist_input.F90
src/offline/cable_output.F90
src/offline/cable_parameters.F90
src/offline/cable_pft_params.F90
src/offline/cable_phenology.F90
src/offline/cable_plume_mip.F90
src/offline/cable_read.F90
src/offline/cable_site.F90
src/offline/cable_serial.F90
src/offline/cable_soil_params.F90
src/offline/cable_weathergenerator.F90
src/offline/cable_write.F90
src/offline/casa_cable.F90
src/offline/casa_ncdf.F90
src/offline/casa_offline_inout.F90
src/offline/CASAONLY_LUC.F90
src/offline/cbl_model_driver_offline.F90
src/offline/landuse_inout.F90
src/offline/spincasacnp.F90
src/offline/cable_surface_types.F90
src/params/cable_maths_constants_mod.F90
src/params/cable_other_constants_mod.F90
src/params/cable_photo_constants_mod.F90
src/params/cable_phys_constants_mod.F90
src/params/grid_constants_cbl.F90
src/science/albedo/cbl_albedo.F90
src/science/albedo/cbl_snow_albedo.F90
src/science/albedo/cbl_soilColour_albedo.F90
src/science/canopy/cable_canopy.F90
src/science/canopy/cbl_dryLeaf.F90
src/science/canopy/cbl_friction_vel.F90
src/science/canopy/cbl_fwsoil.F90
src/science/canopy/cbl_init_wetfac_mod.f90
src/science/canopy/cbl_latent_heat.F90
src/science/canopy/cbl_photosynthesis.F90
src/science/canopy/cbl_pot_evap_snow.F90
src/science/canopy/cbl_qsat.F90
src/science/canopy/cbl_SurfaceWetness.F90
src/science/canopy/cbl_wetleaf.F90
src/science/canopy/cbl_within_canopy.F90
src/science/canopy/cbl_zetar.F90
src/science/casa-cnp/bgcdriver.F90
src/science/casa-cnp/biogeochem_casa.F90
src/science/casa-cnp/casa_cnp.F90
src/science/casa-cnp/casa_dimension.F90
src/science/casa-cnp/casa_feedback.F90
src/science/casa-cnp/casa_inout.F90
src/science/casa-cnp/casa_param.F90
src/science/casa-cnp/casa_phenology.F90
src/science/casa-cnp/casa_readbiome.F90
src/science/casa-cnp/casa_rplant.F90
src/science/casa-cnp/casa_sumcflux.F90
src/science/casa-cnp/casa_variable.F90
src/science/gw_hydro/cable_gw_hydro.F90
src/science/gw_hydro/cable_psm.F90
src/science/landuse/landuse3.F90
src/science/landuse/landuse_constant.F90
src/science/misc/cable_air.F90
src/science/misc/cable_carbon.F90
src/science/misc/cable_climate.F90
src/science/pop/pop_constants.F90
src/science/pop/pop_def.F90
src/science/pop/POP.F90
src/science/pop/pop_io.F90
src/science/pop/POPLUC.F90
src/science/pop/pop_types.F90
src/science/radiation/cbl_init_radiation.F90
src/science/radiation/cbl_radiation.F90
src/science/radiation/cbl_rhoch.F90
src/science/radiation/cbl_sinbet.F90
src/science/radiation/cbl_spitter.F90
src/science/roughness/cable_roughness.F90
src/science/roughness/roughnessHGT_effLAI_cbl.F90
src/science/sli/cable_sli_main.F90
src/science/sli/cable_sli_numbers.F90
src/science/sli/cable_sli_roots.F90
src/science/sli/cable_sli_solve.F90
src/science/sli/cable_sli_utils.F90
src/science/soilsnow/cbl_conductivity.F90
src/science/soilsnow/cbl_GW.F90
src/science/soilsnow/cbl_hyd_redistrib.F90
src/science/soilsnow/cbl_Oldconductivity.F90
src/science/soilsnow/cbl_remove_trans.F90
src/science/soilsnow/cbl_smoisturev.F90
src/science/soilsnow/cbl_snowAccum.F90
src/science/soilsnow/cbl_snow_aging.F90
src/science/soilsnow/cbl_snowCheck.F90
src/science/soilsnow/cbl_snowDensity.F90
src/science/soilsnow/cbl_snowl_adjust.F90
src/science/soilsnow/cbl_snowMelt.F90
src/science/soilsnow/cbl_soilfreeze.F90
src/science/soilsnow/cbl_soilsnow_data.F90
src/science/soilsnow/cbl_soilsnow_init_special.F90
src/science/soilsnow/cbl_soilsnow_main.F90
src/science/soilsnow/cbl_stempv.F90
src/science/soilsnow/cbl_surfbv.F90
src/science/soilsnow/cbl_thermal.F90
src/science/soilsnow/cbl_trimb.F90
src/util/cable_climate_type_mod.F90
src/util/cable_common.F90
src/util/cable_runtime_opts_mod.F90
src/util/masks_cbl.F90
)
target_link_libraries(cable_common PRIVATE PkgConfig::NETCDF)
if(CABLE_MPI)
target_compile_definitions(cable_common PRIVATE __MPI__)
target_link_libraries(cable_common PRIVATE MPI::MPI_Fortran)
endif()
if(CABLE_LIBRARY)

if(CABLE_MPI)
add_executable(
cable-mpi
src/offline/cable_mpicommon.F90
src/offline/cable_mpimaster.F90
src/offline/cable_mpiworker.F90
src/science/pop/pop_mpi.F90
src/offline/cable_offline_driver.F90
add_library(
cable_science
STATIC
src/science/albedo/cbl_albedo.F90
src/science/albedo/cbl_snow_albedo.F90
src/science/albedo/cbl_soilColour_albedo.F90
src/science/canopy/cable_canopy.F90
src/science/canopy/cbl_dryLeaf.F90
src/science/canopy/cbl_friction_vel.F90
src/science/canopy/cbl_fwsoil.F90
src/science/canopy/cbl_init_wetfac_mod.F90
src/science/canopy/cbl_latent_heat.F90
src/science/canopy/cbl_photosynthesis.F90
src/science/canopy/cbl_pot_evap_snow.F90
src/science/canopy/cbl_qsat.F90
src/science/canopy/cbl_SurfaceWetness.F90
src/science/canopy/cbl_wetleaf.F90
src/science/canopy/cbl_within_canopy.F90
src/science/canopy/cbl_zetar.F90
src/science/casa-cnp/bgcdriver.F90
src/science/casa-cnp/biogeochem_casa.F90
src/science/casa-cnp/casa_cnp.F90
src/science/casa-cnp/casa_dimension.F90
src/science/casa-cnp/casa_feedback.F90
src/science/casa-cnp/casa_inout.F90
src/science/casa-cnp/casa_param.F90
src/science/casa-cnp/casa_phenology.F90
src/science/casa-cnp/casa_readbiome.F90
src/science/casa-cnp/casa_rplant.F90
src/science/casa-cnp/casa_sumcflux.F90
src/science/casa-cnp/casa_variable.F90
src/science/gw_hydro/cable_gw_hydro.F90
src/science/gw_hydro/cable_psm.F90
src/science/landuse/landuse3.F90
src/science/landuse/landuse_constant.F90
src/science/misc/cable_air.F90
src/science/misc/cable_carbon.F90
src/science/misc/cable_climate.F90
src/science/pop/pop_constants.F90
src/science/pop/pop_def.F90
src/science/pop/POP.F90
src/science/pop/pop_io.F90
src/science/pop/POPLUC.F90
src/science/pop/pop_types.F90
src/science/radiation/cbl_init_radiation.F90
src/science/radiation/cbl_radiation.F90
src/science/radiation/cbl_rhoch.F90
src/science/radiation/cbl_sinbet.F90
src/science/radiation/cbl_spitter.F90
src/science/roughness/cable_roughness.F90
src/science/roughness/roughnessHGT_effLAI_cbl.F90
src/science/sli/cable_sli_main.F90
src/science/sli/cable_sli_numbers.F90
src/science/sli/cable_sli_roots.F90
src/science/sli/cable_sli_solve.F90
src/science/sli/cable_sli_utils.F90
src/science/soilsnow/cbl_conductivity.F90
src/science/soilsnow/cbl_GW.F90
src/science/soilsnow/cbl_hyd_redistrib.F90
src/science/soilsnow/cbl_Oldconductivity.F90
src/science/soilsnow/cbl_remove_trans.F90
src/science/soilsnow/cbl_smoisturev.F90
src/science/soilsnow/cbl_snowAccum.F90
src/science/soilsnow/cbl_snow_aging.F90
src/science/soilsnow/cbl_snowCheck.F90
src/science/soilsnow/cbl_snowDensity.F90
src/science/soilsnow/cbl_snowl_adjust.F90
src/science/soilsnow/cbl_snowMelt.F90
src/science/soilsnow/cbl_soilfreeze.F90
src/science/soilsnow/cbl_soilsnow_data.F90
src/science/soilsnow/cbl_soilsnow_init_special.F90
src/science/soilsnow/cbl_soilsnow_main.F90
src/science/soilsnow/cbl_stempv.F90
src/science/soilsnow/cbl_surfbv.F90
src/science/soilsnow/cbl_thermal.F90
src/science/soilsnow/cbl_trimb.F90
src/params/cable_phys_constants_mod.F90
src/params/grid_constants_cbl.F90
src/params/cable_photo_constants_mod.F90
src/params/cable_other_constants_mod.F90
src/params/cable_maths_constants_mod.F90
src/util/cable_runtime_opts_mod.F90
src/util/cable_common.F90
src/coupled/esm16/casa_offline_inout.F90
src/coupled/esm16/casa_ncdf.F90
src/coupled/esm16/cable_iovars.F90
src/coupled/esm16/cable_surface_types.F90
src/coupled/esm16/cable_define_types.F90
src/coupled/esm16/cable_phenology.F90
src/coupled/esm16/cable_LUC_EXPT.F90
)
target_link_libraries(cable-mpi PRIVATE cable_common MPI::MPI_Fortran)
install(TARGETS cable-mpi RUNTIME)

else()
add_executable(
cable
src/offline/cable_mpimaster_stub.F90
src/offline/cable_mpiworker_stub.F90
src/offline/cable_offline_driver.F90

add_library(
cable_common
STATIC
src/science/albedo/cbl_albedo.F90
src/science/albedo/cbl_snow_albedo.F90
src/science/albedo/cbl_soilColour_albedo.F90
src/science/canopy/cable_canopy.F90
src/science/canopy/cbl_dryLeaf.F90
src/science/canopy/cbl_friction_vel.F90
src/science/canopy/cbl_fwsoil.F90
src/science/canopy/cbl_init_wetfac_mod.F90
src/science/canopy/cbl_latent_heat.F90
src/science/canopy/cbl_photosynthesis.F90
src/science/canopy/cbl_pot_evap_snow.F90
src/science/canopy/cbl_qsat.F90
src/science/canopy/cbl_SurfaceWetness.F90
src/science/canopy/cbl_wetleaf.F90
src/science/canopy/cbl_within_canopy.F90
src/science/canopy/cbl_zetar.F90
src/science/casa-cnp/bgcdriver.F90
src/science/casa-cnp/biogeochem_casa.F90
src/science/casa-cnp/casa_cnp.F90
src/science/casa-cnp/casa_dimension.F90
src/science/casa-cnp/casa_feedback.F90
src/science/casa-cnp/casa_inout.F90
src/science/casa-cnp/casa_param.F90
src/science/casa-cnp/casa_phenology.F90
src/science/casa-cnp/casa_readbiome.F90
src/science/casa-cnp/casa_rplant.F90
src/science/casa-cnp/casa_sumcflux.F90
src/science/casa-cnp/casa_variable.F90
src/science/gw_hydro/cable_gw_hydro.F90
src/science/gw_hydro/cable_psm.F90
src/science/landuse/landuse3.F90
src/science/landuse/landuse_constant.F90
src/science/misc/cable_air.F90
src/science/misc/cable_carbon.F90
src/science/misc/cable_climate.F90
src/science/pop/pop_constants.F90
src/science/pop/pop_def.F90
src/science/pop/POP.F90
src/science/pop/pop_io.F90
src/science/pop/POPLUC.F90
src/science/pop/pop_types.F90
src/science/radiation/cbl_init_radiation.F90
src/science/radiation/cbl_radiation.F90
src/science/radiation/cbl_rhoch.F90
src/science/radiation/cbl_sinbet.F90
src/science/radiation/cbl_spitter.F90
src/science/roughness/cable_roughness.F90
src/science/roughness/roughnessHGT_effLAI_cbl.F90
src/science/sli/cable_sli_main.F90
src/science/sli/cable_sli_numbers.F90
src/science/sli/cable_sli_roots.F90
src/science/sli/cable_sli_solve.F90
src/science/sli/cable_sli_utils.F90
src/science/soilsnow/cbl_conductivity.F90
src/science/soilsnow/cbl_GW.F90
src/science/soilsnow/cbl_hyd_redistrib.F90
src/science/soilsnow/cbl_Oldconductivity.F90
src/science/soilsnow/cbl_remove_trans.F90
src/science/soilsnow/cbl_smoisturev.F90
src/science/soilsnow/cbl_snowAccum.F90
src/science/soilsnow/cbl_snow_aging.F90
src/science/soilsnow/cbl_snowCheck.F90
src/science/soilsnow/cbl_snowDensity.F90
src/science/soilsnow/cbl_snowl_adjust.F90
src/science/soilsnow/cbl_snowMelt.F90
src/science/soilsnow/cbl_soilfreeze.F90
src/science/soilsnow/cbl_soilsnow_data.F90
src/science/soilsnow/cbl_soilsnow_init_special.F90
src/science/soilsnow/cbl_soilsnow_main.F90
src/science/soilsnow/cbl_stempv.F90
src/science/soilsnow/cbl_surfbv.F90
src/science/soilsnow/cbl_thermal.F90
src/science/soilsnow/cbl_trimb.F90
src/params/cable_phys_constants_mod.F90
src/params/grid_constants_cbl.F90
src/params/cable_photo_constants_mod.F90
src/params/cable_other_constants_mod.F90
src/params/cable_maths_constants_mod.F90
src/util/cable_runtime_opts_mod.F90
src/util/cable_common.F90
src/offline/casa_offline_inout.F90
src/offline/casa_ncdf.F90
src/offline/cable_iovars.F90
src/offline/cable_surface_types.F90
src/offline/cable_define_types.F90
src/offline/cable_phenology.F90
src/offline/cable_LUC_EXPT.F90
src/offline/CASAONLY_LUC.F90
src/offline/cable_abort.F90
src/offline/cable_checks.F90
src/offline/cable_cru_TRENDY.F90
src/offline/cable_driver_init.F90
src/offline/cable_initialise.F90
src/offline/cable_input.F90
src/offline/cable_metutils.F90
src/offline/cable_mpi.F90
src/offline/cable_namelist_input.F90
src/offline/cable_output.F90
src/offline/cable_parameters.F90
src/offline/cable_pft_params.F90
src/offline/cable_plume_mip.F90
src/offline/cable_read.F90
src/offline/cable_site.F90
src/offline/cable_serial.F90
src/offline/cable_soil_params.F90
src/offline/cable_weathergenerator.F90
src/offline/cable_write.F90
src/offline/casa_cable.F90
src/offline/cbl_model_driver_offline.F90
src/offline/landuse_inout.F90
src/offline/spincasacnp.F90
src/util/cable_climate_type_mod.F90
src/util/masks_cbl.F90
)
target_link_libraries(cable PRIVATE cable_common)
install(TARGETS cable RUNTIME)
endif()

target_link_libraries(cable_common PRIVATE PkgConfig::NETCDF)

if(CABLE_MPI)
target_compile_definitions(cable_common PRIVATE __MPI__)
target_link_libraries(cable_common PRIVATE MPI::MPI_Fortran)
endif()

if(CABLE_MPI)
add_executable(
cable-mpi
src/offline/cable_mpicommon.F90
src/offline/cable_mpimaster.F90
src/offline/cable_mpiworker.F90
src/science/pop/pop_mpi.F90
src/offline/cable_offline_driver.F90
)
target_link_libraries(cable-mpi PRIVATE cable_common MPI::MPI_Fortran)
install(TARGETS cable-mpi RUNTIME)
else()
add_executable(
cable
src/offline/cable_mpimaster_stub.F90
src/offline/cable_mpiworker_stub.F90
src/offline/cable_offline_driver.F90
)
target_link_libraries(cable PRIVATE cable_common)
install(TARGETS cable RUNTIME)
endif()

endif()
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