fix: additional python paths in containers #64
Workflow file for this run
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| name: build | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| - develop | |
| pull_request: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.11"] | |
| snakemake-version: ["7.32.3"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: build | |
| cache-environment: true | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - bioconda | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| snakemake=${{ matrix.snakemake-version }} | |
| setuptools | |
| pip | |
| pytest | |
| - name: Test | |
| run: | | |
| python -m pytest | |
| env: | |
| TMPDIR: ${{ runner.temp }} | |
| shell: micromamba-shell {0} |