fix: install DCC from dev version

due to https://www.github.com/dieterich-lab/DCC/issues/103

config/config.yaml

@@ -120,7 +120,7 @@ containers:
   ciri: 'docker://nciccbr/charlie_ciri2:v1'
   clear: "docker://nciccbr/ccbr_clear:latest"
   cutadapt: 'docker://nciccbr/charlie_cutadapt_fqfilter:v1'
-  dcc: "docker://nciccbr/charlie_dcc:v0.1.0"
+  dcc: "docker://nciccbr/charlie_dcc:v0.2.0"
   fastqc: 'docker://nciccbr/ccrgb_qctools:v4.0'
   mapsplice: "docker://cgrlab/mapsplice2:latest"
   multiqc: 'docker://nciccbr/ccbr_multiqc_1.15:v1'

docker/dcc/Dockerfile

@@ -8,12 +8,13 @@ ENV BUILD_TAG=${BUILD_TAG}
 ARG REPONAME="000000"
 ENV REPONAME=${REPONAME}
 
-# install DCC
-COPY environment.yml /data2/
-ENV CONDA_ENV=dcc
-RUN mamba env create -n ${CONDA_ENV} -f /data2/environment.yml && \
-    echo "conda activate ${CONDA_ENV}" > ~/.bashrc
-ENV PATH="/opt2/conda/envs/${CONDA_ENV}/bin:$PATH"
+# install DCC development version
+ENV DCC_VERSION=4418a9a12a7f6e883734459f8117eba5d585b59a
+WORKDIR /opt2
+RUN wget https://github.com/dieterich-lab/DCC/archive/${DCC_VERSION}.zip -O dcc.zip && \
+    unzip dcc.zip && \
+    cd DCC-${DCC_VERSION} && \
+    python setup.py install
 RUN which DCC && DCC -h
 
 # Save Dockerfile in the docker

docker/dcc/meta.yml

@@ -1,4 +1,4 @@
 dockerhub_namespace: nciccbr
 image_name: charlie_dcc
-version: v0.1.0
+version: v0.2.0
 container: "$(dockerhub_namespace)/$(image_name):$(version)"