CHARLIE 0.11.0

• Major updates to convert CHARLIE from a biowulf-specific to a platform-agnostic pipeline (#102, @kelly-sovacool):
  • All rules now use containers instead of envmodules.
  • Default config and cluster config files are provided for use on biowulf and FRCE.
  • New entry TEMPDIR in the config file sets the temporary directory location for rules that require transient storage.
  • New --singcache argument to provide a singularity cache dir location. The singularity cache dir is automatically set inside /data/$USER/ or $WORKDIR/ if --singcache is not provided.
• Minor documentation improvements. (#114, @kelly-sovacool)