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jobby: snakemake.log.jobby files do not contain localrules #3

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kelly-sovacool opened this issue Apr 18, 2024 · 0 comments
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kelly-sovacool commented Apr 18, 2024

Any rule in a Snakefile which is run as a local rule does not get included in snakemake.log.jobby files. These rules start with localrule <rule_name> rather than rule <rule_name>. Missing these rules gives an inaccurate overview of the workflow log. It would be helpful to include them with their job status and just fill in NAs for columns that can't be known e.g. any cluster-specific stats.

@kelly-sovacool kelly-sovacool added the bug Something isn't working label Apr 18, 2024
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