Skip to content

fix: attempt to fix data finding problems via symlinks

Codecov / codecov/patch succeeded Aug 12, 2024 in 1s

No report found to compare against

View this Pull Request on Codecov

No report found to compare against

Annotations

Check warning on line 65 in src/ccbr_tools/__main__.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/__main__.py#L65 

Added line #L65 was not covered by tests

Check warning on line 81 in src/ccbr_tools/__main__.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/__main__.py#L81 

Added line #L81 was not covered by tests

Check warning on line 89 in src/ccbr_tools/__main__.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/__main__.py#L89 

Added line #L89 was not covered by tests

Check warning on line 95 in src/ccbr_tools/__main__.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/__main__.py#L94-L95 

Added lines #L94 - L95 were not covered by tests

Check warning on line 14 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L14 

Added line #L14 was not covered by tests

Check warning on line 26 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L26 

Added line #L26 was not covered by tests

Check warning on line 29 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L29 

Added line #L29 was not covered by tests

Check warning on line 40 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L40 

Added line #L40 was not covered by tests

Check warning on line 42 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L42 

Added line #L42 was not covered by tests

Check warning on line 45 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L44-L45 

Added lines #L44 - L45 were not covered by tests

Check warning on line 51 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L47-L51 

Added lines #L47 - L51 were not covered by tests

Check warning on line 71 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L53-L71 

Added lines #L53 - L71 were not covered by tests

Check warning on line 75 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L73-L75 

Added lines #L73 - L75 were not covered by tests

Check warning on line 78 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L78 

Added line #L78 was not covered by tests

Check warning on line 97 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L80-L97 

Added lines #L80 - L97 were not covered by tests

Check warning on line 105 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L101-L105 

Added lines #L101 - L105 were not covered by tests

Check warning on line 116 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L107-L116 

Added lines #L107 - L116 were not covered by tests

Check warning on line 120 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L118-L120 

Added lines #L118 - L120 were not covered by tests

Check warning on line 124 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L124 

Added line #L124 was not covered by tests

Check warning on line 141 in src/ccbr_tools/gb2gtf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/gb2gtf.py#L141 

Added line #L141 was not covered by tests

Check warning on line 30 in src/ccbr_tools/homologfinder/hf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/homologfinder/hf.py#L28-L30 

Added lines #L28 - L30 were not covered by tests

Check warning on line 39 in src/ccbr_tools/homologfinder/hf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/homologfinder/hf.py#L39 

Added line #L39 was not covered by tests

Check warning on line 76 in src/ccbr_tools/homologfinder/hf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/homologfinder/hf.py#L76 

Added line #L76 was not covered by tests

Check warning on line 78 in src/ccbr_tools/homologfinder/hf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/homologfinder/hf.py#L78 

Added line #L78 was not covered by tests

Check warning on line 85 in src/ccbr_tools/homologfinder/hf.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/ccbr_tools/homologfinder/hf.py#L84-L85 

Added lines #L84 - L85 were not covered by tests
View more details on Codecov