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ChangeLog
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======================================================================
Originator: Bill Sacks
Date: 11-01-2018
Tag: cime5.7.5
Answer Changes: None
Tests: scripts_regression_tests, CTSM's aux_clm test suite
Dependencies:
Brief Summary: Miscellaneous minor bug fixes, including getting
mpi-serial working again
User interface changes: none
PR summary: git log --oneline --first-parent [previous_tag]..master
e882c1c06 Merge pull request #2897 from billsacks/fix_histutils_regex
fc14d5870 Merge pull request #2895 from billsacks/fix_lnd2glc_averaged_now
beff2289e Merge pull request #2892 from ESMCI/jhkennedy/mpi-serial-2890
44aa1f2c8 Merge pull request #2888 from ESMCI/jhkennedy/charge-account-2886
610ac40c5 Merge pull request #2889 from dabail10/pop_som_frc
a25d2b4c1 Merge pull request #2887 from billsacks/funit_fix_path
6c7981abd Merge pull request #2872 from billsacks/datm_wiso_typo
9087ed3ab Merge pull request #2883 from ESMCI/jgfouca/add_nuopc_e3sm_config
90e595c21 Merge pull request #2882 from jedwards4b/resolve_mpi_run_command
14bb217ec Merge pull request #2876 from ESMCI/jgfouca/fix_pet_no_batch
7720b1e83 Merge pull request #2877 from ESMCI/sarich/update-e3sm-config-driver
ddec7ebf0 Merge pull request #2854 from ESMCI/jhkennedy/machine-missing-2686
Modified files: git diff --name-status [previous_tag]
M ChangeLog
M config/e3sm/config_files.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
M config/xml_schemas/config_machines.xsd
M doc/source/users_guide/cime-config.rst
M scripts/create_clone
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/SystemTests/funit.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/utils.py
M scripts/lib/get_tests.py
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/docn/tools/pop_som_frc/README
M src/components/data_comps/docn/tools/pop_som_frc/pop_frc_mlann.ncl
M src/components/data_comps/docn/tools/pop_som_frc/pop_frc_mlt.ncl
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/component_mod.F90
A src/drivers/nuopc/cime_config/config_component_e3sm.xml
M src/drivers/nuopc/cime_config/namelist_definition_drv.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-22-2018
Tag: cime5.7.4
Answer Changes: I compsets (with datm) change answers due to #2828
(merged to master as #2847)
Tests: scripts_regression_tests, by hand
Dependencies:
Brief Summary:
- Remove all references to BATCHQUERY and BATCHSUBMIT.
- Bug fix.
- Update to CIME statistical ensemble test ensemble generation scripts.
- Fix debug builds for pio.
- Remove commented-out code
- Merge ACME split 2018-10-16
- Fix floating-point mpiprocs for Python 3.
- Fix floating-point mpiprocs for Python 3.
- Merge latest nuopc-cmeps development.
- Don't exceed maximum MPI tag value.
- maint-5.6 merge.
- Propagate logging settings to submitted jobs.
- mlchange: Give user guidance on what to do next.
- Dont hide ctest output in run_tests.py.
- Add FUNIT fake test.
- Improve continue run checks in case_submit.
- Some minor cleanup for nmlgen.py.
- ntasks_per_inst should never be <=0
- one more driver issue
- another driver issue
- fix e3sm cdash issue
- fix cdash issues
- Merge of the nuopc development branch.
- OS is not an environment variable on all systems.
- Add Daint and Euler machines.
- Merge acme split 2018-09-10.
- Fix ESMF library before version 8 build.
- Add /cluster/torque/bin to path on hobart.
User interface changes:
- Python scripts instead of shell scripts for ECT.
- Adds CIME_DRIVER env and config variable to set the default driver.
PR summary: git log --oneline --first-parent [previous_tag]..master
9355d97 Merge pull request #2868 from ESMCI/jgfouca/remove_old_batch_stuff
479c666 Merge pull request #2869 from ESMCI/jgfouca/f90_bug_fix
9839983 Merge pull request #2864 from allibco/master
5850391 Fix debug builds of pio
374dce4 Remove commented-out code
eaeff0c Merge pull request #2858 from ESMCI/jgfouca/branch-for-acme-split-2018-10-16
8d642a1 Merge pull request #2859 from ESMCI/fix_mpiprocs
00b2252 Merge pull request #2857 from jedwards4b/add_mpilibs_query_config
532d4ca Merge pull request #2848 from jedwards4b/nuopc-cmeps
490074f Merge pull request #2804 from ESMCI/jhkennedy/mpi_tags
00908db Merge pull request #2847 from jedwards4b/maint-5.6-merge
fb05358 Merge pull request #2833 from ESMCI/jgfouca/propagate_logging
6fb5659 Merge pull request #2829 from ESMCI/jgfouca/xmlchange_help_user
e002ac3 Merge pull request #2834 from ESMCI/jgfouca/dont_hide_ctest_output
3a5b47a Merge pull request #2826 from ESMCI/jgfouca/funit_fake_test
a4fb22e Merge pull request #2825 from ESMCI/jgfouca/improve_cont_run_guard
1df4dca Merge pull request #2830 from ESMCI/jgfouca/nmlgen_cleanup
9ca93ca ntasks_per_inst should never be <=0
4e621e6 one more driver issue
bdd0563 another driver issue
868c273 fix e3sm cdash issue
83ea95c fix cdash issues
6d383cc Merge pull request #2811 from jedwards4b/jedwards/merge_cmeps
3effd6a OS is not an environment variable on all systems
922f6e7 Merge pull request #2805 from beyerle/ethz
9de1492 Merge pull request #2800 from ESMCI/jgfouca/branch-for-acme-split-2018-09-10
eeae4e3 Merge pull request #2803 from ekluzek/fixesmflog
e075cac Merge pull request #2797 from billsacks/hobart_path
Modified files: git diff --name-status [previous_tag]
M .travis.yml
M ChangeLog
M config/cesm/config_files.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/tests.py
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/env_mach_specific.xsd
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/Tools/case.build
M scripts/Tools/jenkins_generic_job
M scripts/Tools/xmlchange
A scripts/climate_reproducibility/README.md
A scripts/climate_reproducibility/requirements.txt
M scripts/create_newcase
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/Servers/wget.py
A scripts/lib/CIME/SystemTests/funit.py
A scripts/lib/CIME/SystemTests/mvk.py
A scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
A scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_cmpgen_namelists.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/test_utils.py
M scripts/lib/CIME/utils.py
M scripts/lib/jenkins_generic_job.py
M scripts/query_config
A scripts/testlist_cmeps.xml
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
D src/components/data_comps/datm/datm_comp_mod.F90
D src/components/data_comps/datm/datm_shr_mod.F90
A src/components/data_comps/datm/mct/datm_comp_mod.F90
A src/components/data_comps/datm/mct/datm_shr_mod.F90
A src/components/data_comps/datm/nuopc/atm_comp_nuopc.F90
A src/components/data_comps/datm/nuopc/datm_comp_mod.F90
A src/components/data_comps/datm/nuopc/datm_shr_mod.F90
M src/components/data_comps/desp/cime_config/buildnml
M src/components/data_comps/desp/desp_comp_mod.F90
M src/components/data_comps/dice/cime_config/buildnml
M src/components/data_comps/dice/cime_config/config_archive.xml
M src/components/data_comps/dice/cime_config/namelist_definition_dice.xml
D src/components/data_comps/dice/dice_comp_mod.F90
D src/components/data_comps/dice/dice_shr_mod.F90
A src/components/data_comps/dice/mct/dice_comp_mod.F90
A src/components/data_comps/dice/mct/dice_flux_atmice_mod.F90
A src/components/data_comps/dice/mct/dice_shr_mod.F90
A src/components/data_comps/dice/nuopc/dice_comp_mod.F90
A src/components/data_comps/dice/nuopc/dice_flux_atmice_mod.F90
A src/components/data_comps/dice/nuopc/dice_shr_mod.F90
A src/components/data_comps/dice/nuopc/ice_comp_nuopc.F90
M src/components/data_comps/dlnd/cime_config/buildnml
D src/components/data_comps/dlnd/dlnd_comp_mod.F90
D src/components/data_comps/dlnd/dlnd_shr_mod.F90
A src/components/data_comps/dlnd/mct/dlnd_comp_mod.F90
A src/components/data_comps/dlnd/mct/dlnd_shr_mod.F90
A src/components/data_comps/dlnd/nuopc/dlnd_comp_mod.F90
A src/components/data_comps/dlnd/nuopc/dlnd_shr_mod.F90
A src/components/data_comps/dlnd/nuopc/lnd_comp_nuopc.F90
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/cime_config/config_component.xml
D src/components/data_comps/docn/docn_comp_mod.F90
D src/components/data_comps/docn/docn_shr_mod.F90
A src/components/data_comps/docn/mct/docn_comp_mod.F90
A src/components/data_comps/docn/mct/docn_shr_mod.F90
M src/components/data_comps/docn/mct/ocn_comp_mct.F90
A src/components/data_comps/docn/nuopc/docn_comp_mod.F90
A src/components/data_comps/docn/nuopc/docn_shr_mod.F90
A src/components/data_comps/docn/nuopc/ocn_comp_nuopc.F90
M src/components/data_comps/drof/cime_config/buildnml
D src/components/data_comps/drof/drof_comp_mod.F90
D src/components/data_comps/drof/drof_shr_mod.F90
A src/components/data_comps/drof/mct/drof_comp_mod.F90
A src/components/data_comps/drof/mct/drof_shr_mod.F90
A src/components/data_comps/drof/nuopc/drof_comp_mod.F90
A src/components/data_comps/drof/nuopc/drof_shr_mod.F90
A src/components/data_comps/drof/nuopc/rof_comp_nuopc.F90
A src/components/data_comps/dshr_nuopc/dshr_nuopc_mod.F90
M src/components/data_comps/dwav/cime_config/buildnml
D src/components/data_comps/dwav/dwav_comp_mod.F90
D src/components/data_comps/dwav/dwav_shr_mod.F90
A src/components/data_comps/dwav/mct/dwav_comp_mod.F90
A src/components/data_comps/dwav/mct/dwav_shr_mod.F90
A src/components/data_comps/dwav/nuopc/dwav_comp_mod.F90
A src/components/data_comps/dwav/nuopc/dwav_shr_mod.F90
A src/components/data_comps/dwav/nuopc/wav_comp_nuopc.F90
D src/components/stub_comps/satm/cpl/atm_comp_mct.F90
A src/components/stub_comps/satm/mct/atm_comp_mct.F90
A src/components/stub_comps/satm/nuopc/atm_comp_nuopc.F90
D src/components/stub_comps/sesp/cpl/esp_comp_mct.F90
A src/components/stub_comps/sesp/mct/esp_comp_mct.F90
D src/components/stub_comps/sglc/cpl/glc_comp_mct.F90
A src/components/stub_comps/sglc/mct/glc_comp_mct.F90
A src/components/stub_comps/sglc/nuopc/glc_comp_nuopc.F90
D src/components/stub_comps/sice/cpl/ice_comp_mct.F90
A src/components/stub_comps/sice/mct/ice_comp_mct.F90
A src/components/stub_comps/sice/nuopc/ice_comp_nuopc.F90
D src/components/stub_comps/slnd/cpl/lnd_comp_mct.F90
A src/components/stub_comps/slnd/mct/lnd_comp_mct.F90
A src/components/stub_comps/slnd/nuopc/lnd_comp_nuopc.F90
D src/components/stub_comps/socn/cpl/ocn_comp_mct.F90
A src/components/stub_comps/socn/mct/ocn_comp_mct.F90
A src/components/stub_comps/socn/nuopc/ocn_comp_nuopc.F90
D src/components/stub_comps/srof/cpl/rof_comp_mct.F90
A src/components/stub_comps/srof/mct/rof_comp_mct.F90
A src/components/stub_comps/srof/nuopc/rof_comp_nuopc.F90
D src/components/stub_comps/swav/cpl/wav_comp_mct.F90
A src/components/stub_comps/swav/mct/wav_comp_mct.F90
A src/components/stub_comps/swav/nuopc/wav_comp_nuopc.F90
D src/components/xcpl_comps/xatm/cpl/atm_comp_mct.F90
A src/components/xcpl_comps/xatm/mct/atm_comp_mct.F90
A src/components/xcpl_comps/xatm/nuopc/atm_comp_nuopc.F90
D src/components/xcpl_comps/xglc/cpl/glc_comp_mct.F90
A src/components/xcpl_comps/xglc/mct/glc_comp_mct.F90
A src/components/xcpl_comps/xglc/nuopc/glc_comp_nuopc.F90
D src/components/xcpl_comps/xice/cpl/ice_comp_mct.F90
A src/components/xcpl_comps/xice/mct/ice_comp_mct.F90
A src/components/xcpl_comps/xice/nuopc/ice_comp_nuopc.F90
D src/components/xcpl_comps/xlnd/cpl/lnd_comp_mct.F90
A src/components/xcpl_comps/xlnd/mct/lnd_comp_mct.F90
A src/components/xcpl_comps/xlnd/nuopc/lnd_comp_nuopc.F90
D src/components/xcpl_comps/xocn/cpl/ocn_comp_mct.F90
A src/components/xcpl_comps/xocn/mct/ocn_comp_mct.F90
A src/components/xcpl_comps/xocn/nuopc/ocn_comp_nuopc.F90
D src/components/xcpl_comps/xrof/cpl/rof_comp_mct.F90
A src/components/xcpl_comps/xrof/mct/rof_comp_mct.F90
A src/components/xcpl_comps/xrof/nuopc/rof_comp_nuopc.F90
D src/components/xcpl_comps/xshare/dead_data_mod.F90
D src/components/xcpl_comps/xshare/dead_mct_mod.F90
D src/components/xcpl_comps/xshare/dead_mod.F90
A src/components/xcpl_comps/xshare/mct/dead_data_mod.F90
A src/components/xcpl_comps/xshare/mct/dead_mct_mod.F90
A src/components/xcpl_comps/xshare/mct/dead_mod.F90
A src/components/xcpl_comps/xshare/nuopc/dead_nuopc_mod.F90
D src/components/xcpl_comps/xwav/cpl/wav_comp_mct.F90
A src/components/xcpl_comps/xwav/mct/wav_comp_mct.F90
A src/components/xcpl_comps/xwav/nuopc/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/buildexe
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/cime_driver.F90
M src/drivers/mct/main/component_mod.F90
M src/drivers/mct/main/prep_ocn_mod.F90
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
A src/drivers/moab/cime_config/buildexe
A src/drivers/moab/cime_config/buildnml
A src/drivers/moab/cime_config/config_archive.xml
A src/drivers/moab/cime_config/config_component.xml
A src/drivers/moab/cime_config/config_component_cesm.xml
A src/drivers/moab/cime_config/config_component_e3sm.xml
A src/drivers/moab/cime_config/config_compsets.xml
A src/drivers/moab/cime_config/config_pes.xml
A src/drivers/moab/cime_config/namelist_definition_drv.xml
A src/drivers/moab/cime_config/namelist_definition_drv_flds.xml
A src/drivers/moab/cime_config/namelist_definition_modelio.xml
A src/drivers/moab/cime_config/user_nl_cpl
A src/drivers/moab/main/CMakeLists.txt
A src/drivers/moab/main/cime_comp_mod.F90
A src/drivers/moab/main/cime_driver.F90
A src/drivers/moab/main/component_mod.F90
A src/drivers/moab/main/component_type_mod.F90
A src/drivers/moab/main/cplcomp_exchange_mod.F90
A src/drivers/moab/main/map_glc2lnd_mod.F90
A src/drivers/moab/main/map_lnd2glc_mod.F90
A src/drivers/moab/main/map_lnd2rof_irrig_mod.F90
A src/drivers/moab/main/mrg_mod.F90
A src/drivers/moab/main/prep_aoflux_mod.F90
A src/drivers/moab/main/prep_atm_mod.F90
A src/drivers/moab/main/prep_glc_mod.F90
A src/drivers/moab/main/prep_ice_mod.F90
A src/drivers/moab/main/prep_lnd_mod.F90
A src/drivers/moab/main/prep_ocn_mod.F90
A src/drivers/moab/main/prep_rof_mod.F90
A src/drivers/moab/main/prep_wav_mod.F90
A src/drivers/moab/main/seq_diag_mct.F90
A src/drivers/moab/main/seq_domain_mct.F90
A src/drivers/moab/main/seq_flux_mct.F90
A src/drivers/moab/main/seq_frac_mct.F90
A src/drivers/moab/main/seq_hist_mod.F90
A src/drivers/moab/main/seq_io_mod.F90
A src/drivers/moab/main/seq_map_mod.F90
A src/drivers/moab/main/seq_map_type_mod.F90
A src/drivers/moab/main/seq_rest_mod.F90
A src/drivers/moab/main/t_driver_timers_mod.F90
A src/drivers/moab/shr/CMakeLists.txt
A src/drivers/moab/shr/glc_elevclass_mod.F90
A src/drivers/moab/shr/seq_cdata_mod.F90
A src/drivers/moab/shr/seq_comm_mct.F90
A src/drivers/moab/shr/seq_drydep_mod.F90
A src/drivers/moab/shr/seq_flds_mod.F90
A src/drivers/moab/shr/seq_infodata_mod.F90
A src/drivers/moab/shr/seq_io_read_mod.F90
A src/drivers/moab/shr/seq_timemgr_mod.F90
A src/drivers/moab/shr/shr_carma_mod.F90
A src/drivers/moab/shr/shr_expr_parser_mod.F90
A src/drivers/moab/shr/shr_fire_emis_mod.F90
A src/drivers/moab/shr/shr_megan_mod.F90
A src/drivers/moab/shr/shr_ndep_mod.F90
A src/drivers/nuopc/cime_config/buildexe
A src/drivers/nuopc/cime_config/buildnml
A src/drivers/nuopc/cime_config/config_archive.xml
A src/drivers/nuopc/cime_config/config_component.xml
A src/drivers/nuopc/cime_config/config_component_cesm.xml
A src/drivers/nuopc/cime_config/config_compsets.xml
A src/drivers/nuopc/cime_config/config_pes.xml
A src/drivers/nuopc/cime_config/fd.yaml
A src/drivers/nuopc/cime_config/namelist_definition_drv.xml
A src/drivers/nuopc/cime_config/namelist_definition_drv_flds.xml
A src/drivers/nuopc/cime_config/namelist_definition_modelio.xml
A src/drivers/nuopc/cime_config/testdefs/testlist_drv.xml
A src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/5steps/shell_commands
A src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/default/shell_commands
A src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/glcnec10/include_user_mods
A src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/glcnec10/shell_commands
A src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/som/shell_commands
A src/drivers/nuopc/cime_config/user_nl_cpl
A src/drivers/nuopc/cime_driver/ensemble_driver.F90
A src/drivers/nuopc/cime_driver/esm.F90
A src/drivers/nuopc/cime_driver/esmApp.F90
A src/drivers/nuopc/cime_driver/t_driver_timers_mod.F90
A src/drivers/nuopc/cime_driver/util.F90
A src/drivers/nuopc/cime_flds/esmDict.F90
A src/drivers/nuopc/cime_flds/esmFlds.F90
A src/drivers/nuopc/cime_flds/glc_elevclass_mod.F90
A src/drivers/nuopc/cime_flds/seq_drydep_mod.F90
A src/drivers/nuopc/cime_flds/shr_carma_mod.F90
A src/drivers/nuopc/cime_flds/shr_fire_emis_mod.F90
A src/drivers/nuopc/cime_flds/shr_flds_mod.F90
A src/drivers/nuopc/cime_flds/shr_megan_mod.F90
A src/drivers/nuopc/cime_flds/shr_ndep_mod.F90
A src/drivers/nuopc/mediator/ESMFConvenienceMacros.h
A src/drivers/nuopc/mediator/ESMFVersionDefine.h
A src/drivers/nuopc/mediator/med.F90
A src/drivers/nuopc/mediator/med_connectors_mod.F90
A src/drivers/nuopc/mediator/med_fraction_mod.F90
A src/drivers/nuopc/mediator/med_infodata_mod.F90
A src/drivers/nuopc/mediator/med_internalstate_mod.F90
A src/drivers/nuopc/mediator/med_io_mod.F90
A src/drivers/nuopc/mediator/med_map_mod.F90
A src/drivers/nuopc/mediator/med_merge_mod.F90
A src/drivers/nuopc/mediator/med_phases_aofluxes_mod.F90
A src/drivers/nuopc/mediator/med_phases_history_mod.F90
A src/drivers/nuopc/mediator/med_phases_mod.F90
A src/drivers/nuopc/mediator/med_phases_ocnalb_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_atm_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_glc_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_ice_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_lnd_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_ocn_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_rof_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_wav_mod.F90
A src/drivers/nuopc/mediator/med_phases_restart_mod.F90
A src/drivers/nuopc/shr/CMakeLists.txt
A src/drivers/nuopc/shr/med_constants_mod.F90
A src/drivers/nuopc/shr/seq_comm_mct.F90
A src/drivers/nuopc/shr/seq_timemgr_mod.F90
A src/drivers/nuopc/shr/shr_expr_parser_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_fldList_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_grid_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_methods_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_scalars_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_time_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_utils_mod.F90
M src/externals/pio1/pio/piodarray.F90.in
M src/externals/pio2/cmake/FindNetCDF.cmake
M src/share/streams/shr_dmodel_mod.F90
M src/share/streams/shr_stream_mod.F90
M src/share/util/mct_mod.F90
M src/share/util/shr_file_mod.F90
M src/share/util/shr_flds_mod.F90
M src/share/util/shr_frz_mod.F90.in
M src/share/util/shr_taskmap_mod.F90
M tools/statistical_ensemble_test/README
M tools/statistical_ensemble_test/ensemble.py
D tools/statistical_ensemble_test/ensemble.sh
M tools/statistical_ensemble_test/single_run.py
D tools/statistical_ensemble_test/single_run.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-8-2018
Tag: cime_cesm2_1_rel_01
Answer Changes: None
Tests: scripts_regression_test
Dependencies:
Brief Summary:
- Update presaero and CO2 datasets for datm7 to new CMIP6 version.
- Better format for seq_flds_YYY_{fluxes,states} log messages.
- Attach the instance number to 'cpl' in cpl history file names.
- Fix inputdata issue for multi_instance cases.
User interface changes:
- Added clim_2010 option for DATM_PRESAERO
Added 20tr.latbnd option for DATM_CO2_TSERIES
GSWP3v1 and CRUNCEPv7 forcing sets appropriate years for compsets starting with 2010
PR summary: git log --oneline --first-parent [previous_tag]..master
88d9297 Merge pull request #2828 from ekluzek/newpresaero
6568ded Merge pull request #2824 from kdraeder/kdr_seq_flds_log_msgs
fcf60c8 Merge pull request #2782 from kdraeder/kdr_fix_cpl_hist_names
6511798 Merge pull request #2823 from jedwards4b/multi_inst_check_input
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/archive_metadata
M scripts/create_newcase
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/nmlgen.py
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/desp/cime_config/buildnml
M src/components/data_comps/dice/cime_config/buildnml
M src/components/data_comps/dlnd/cime_config/buildnml
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/drof/cime_config/buildnml
M src/components/data_comps/dwav/cime_config/buildnml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-2-2018
Tag: cime_cesm2_0_rel_06
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Archive_metadata updates for CMIP6 experiments.
- OS is not generic env var.
- New machines at ETH and CSCS.
- Update ESMF library on cheyenne.
- Fix documentation for histaux_r2x namelist variable.
- Dont allow zero ntasks nthrds.
- Add lapack and blas libraries to pgi compile on cheyenne.
- Updates for compatibility with XML to html tools.
- Remove additional rad->deg conversion to radians when creating ocean
domain files.
- ESMF logging fix.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
12e1c4d41 (HEAD -> maint-5.6, origin/maint-5.6) Merge pull request #2815 from bertinia/maint-5.6_archive_metadata
767511a79 OS is not generic env var
bec49f0c2 Merge pull request #2807 from beyerle/euler_daint
9e74b8ab3 Merge pull request #2806 from ESMCI/fischer/ESMF_710r
0f20ab46e Merge pull request #2774 from billsacks/fix_histaux_r2x_docs
1c10e58e8 Merge pull request #2768 from jedwards4b/dont_allow_zero_ntasks_nthrds
6a1069ce3 Merge pull request #2753 from jedwards4b/pgi_lapack
5a0a56721 Merge pull request #2742 from bertinia/maint-5.6-component-return-values
cbf8f2216 Merge pull request #2736 from jtruesdal/domainfix
2e34a0305 Merge pull request #2733 from gold2718/esmf_log_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/Tools/archive_metadata
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/utils.py
M src/components/data_comps/docn/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/cime_driver.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/esmf_wrf_timemgr/ESMF_Stubs.F90
M tools/mapping/gen_domain_files/src/gen_domain.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 7-24-2018
Tag: cime_cesm2_0_rel_05
Date: 8-30-2018
Tag: cime5.7.3
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix pruning of test_hists with refcase in their name.
- Do not report BFAIL for a test that is missing a file.
- Fix use of test_utils.
- Rewrite array code as loops to appease NAG.
- Make a new grid to ensure ADWAV works with f19_f19.
- Add options to cs.status to allow just summarizing failures.
- Fix DAE test for scripts_regression_tests.
User interface changes:
- Adds some optional arguments to cs.status, but no other changes.
PR summary: git log --oneline --first-parent [previous_tag]..master
33b347b Merge pull request #2794 from billsacks/fix_eri
442c6a6 Merge pull request #2789 from billsacks/no_bfail_if_no_original
bc8166b Merge pull request #2785 from billsacks/fix_create_test
04075df Merge pull request #2784 from gold2718/fix_mct_mod
1a2724e Merge pull request #2780 from ESMCI/jgfouca/fix_e3sm_adwav_test
4ec710a Merge pull request #2775 from billsacks/cs_status_fails_only
9b09698 Merge pull request #2777 from gold2718/fix_dae
Modified files: git diff --name-status [previous_tag]
M config/e3sm/config_grids.xml
D scripts/Tools/cimeteststatus
M scripts/Tools/cs.status
M scripts/create_test
M scripts/data_assimilation/da_no_data_mod.sh
M scripts/lib/CIME/SystemTests/dae.py
A scripts/lib/CIME/cs_status.py
M scripts/lib/CIME/cs_status_creator.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/test_status.py
A scripts/lib/CIME/tests/test_cs_status.py
M scripts/lib/cs.status.template
M scripts/lib/get_tests.py
A scripts/lib/six_additions.py
M src/share/util/mct_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-23-2018
Tag: cime5.7.2
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Add a comment to special interfaces.
- Merge maint-5.6 branch.
- Update DWAV model to be compatible with the new post-data-assimilation functionality.
- Propagate --project value to CHARGE_ACCOUNT.
- Re-implementation of pause/resume with a few features.
- Allow TestStatus file to be copied into baselines.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
c4f0206 add a comment to special interfaces
b4bb592 Merge branch 'mymaint-5.6'
aa3c8db Merge pull request #2765 from gold2718/fix_dwav
b1bc5d6 Merge pull request #2763 from ESMCI/sarich/fix-charge-account
ca3ac20 Merge pull request #2751 from gold2718/new_resume_method
2f57f3e Merge pull request #2761 from ESMCI/jgfouca/generate_test_status
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/data_assimilation/da_no_data_mod.sh
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/test_scheduler.py
M src/components/data_comps/desp/desp_comp_mod.F90
M src/components/data_comps/desp/mct/esp_comp_mct.F90
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/dwav/mct/wav_comp_mct.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/cime_driver.F90
M src/drivers/mct/main/component_mod.F90
M src/drivers/mct/main/component_type_mod.F90
M src/drivers/mct/main/seq_rest_mod.F90
M src/drivers/mct/shr/CMakeLists.txt
M src/drivers/mct/shr/seq_cdata_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
A src/drivers/mct/shr/seq_pauseresume_mod.F90
M src/share/esmf_wrf_timemgr/ESMF_Stubs.F90
M tools/mapping/gen_domain_files/src/gen_domain.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-20-2018
Tag: cime5.7.1
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- DAE test improve.
- Extract code for creating a test suite-specific cs.status script.
- Disable problematic task-node output by default.
- Add BFAIL in more contexts when doing baseline comparisons.
- Do a better job of handling exceptions in sub-phases of run.
- Merge acme split 2018-08-08.
- Use information from env_archive.xml to determine history files for baselines and compares.
- For inputdata servers make it so key members are always defined.
- Add exception for archive_metadata.
- Fix merge issue
- Merge maint-5.6 to master
- Need to specify compiler to mpilibs.
- Use RawConfigParser instead of ConfigParser.
- Fix pylint error.
- Improve compiler not support msg.
- Couple minor fixes to e3sm cime mgmt tools.
- Turn off auto conflict resolution by default for e3sm cime mgmt tools.
- Rework machine overrides in config_compilers.
- Merge acme split 2018-07-11.
- Merge acme split 2018-07-06.
- More fixes and tests for V2 compiler macro system.
- Automatically handle easy conflicts in e3sm cime management.
- Add return_values to machines.py for XML to HTML machine script.
- Needed a function to get all compset longnames from config_compsets.xml.
- Fix for passing run arguments in LSF.
- Use ConfigParser rather than SafeConfigParser.
- Merge acme split 2018-06-25.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
84d14aeac Merge pull request #2759 from gold2718/dae_test_improve
f1349f993 Merge pull request #2755 from billsacks/custom_cs_status
86c25a010 Merge pull request #2750 from ESMCI/jgfouca/fix_fortran_unit_tests
9d352467d Merge pull request #2744 from ESMCI/jgfouca/more_bfails
955ecba43 Merge pull request #2745 from ESMCI/jgfouca/fix_exc_handling_systest
07d476de1 (tag: to-acme-2018-08-09) Merge pull request #2743 from ESMCI/jgfouca/branch-for-acme-split-2018-08-08
4723dd25f Merge pull request #2728 from jedwards4b/hist_utils_use_archive_xml
4da37d863 Merge pull request #2740 from ESMCI/jgfouca/fixes_for_servers
dfbbe0827 add exception for archive_metadata :-(
4f41034b0 fix merge issue
194640859 merge maint-5.6 to master
b0dc6ee0f Merge pull request #2723 from jedwards4b/multi_mpilibs_fix
9fd318849 Merge pull request #2722 from ESMCI/mfdeakin-sandia/submit/ConfigParser
ea7d206fe Merge pull request #2721 from ESMCI/jgfouca/fix_py3_pylint_errs
23f27bafa Merge pull request #2720 from ESMCI/jgfouca/improve_msg
1aa9cbf6e Couple minor fixes to e3sm cime mgmt tools
5885138c2 (tag: to-acme-2018-07-12) Merge pull request #2712 from ESMCI/jgfouca/turn_off_autoconf_by_de
869115d64 Merge pull request #2710 from ESMCI/quantheory/redo_machine_specific_compilers
df89bcec5 Merge pull request #2711 from ESMCI/jgfouca/branch-for-acme-split-2018-07-11
d52719d86 (tag: to-acme-2018-07-06) Merge pull request #2704 from ESMCI/jgfouca/branch-for-acme-split-2018-07-06
516831614 Merge pull request #2703 from ESMCI/jgfouca/compilers_fix
290b78033 Merge pull request #2696 from ESMCI/jgfouca/e3sm_mgmt_autohandle_ez_confs
25630d675 (tag: to-acme-2018-06-28) Merge pull request #2694 from bertinia/maint-5.6-machines
1f4215d1f Merge pull request #2691 from jedwards4b/compsets
fc534795f Merge pull request #2692 from ESMCI/mfdeakin-sandia/lsf-fix
b76de49d5 Merge pull request #2680 from ESMCI/mfdeakin-sandia/case_submit/config_no_interpolate
4948d663b Merge pull request #2689 from ESMCI/jgfouca/branch-for-acme-split-2018-06-25
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_files.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
A config/e3sm/machines/syslog.summit
M config/e3sm/machines/template.st_archive
M config/e3sm/testmods_dirs/allactive/mach/pet/shell_commands
M config/e3sm/testmods_dirs/allactive/v1cmip6/shell_commands
M config/e3sm/tests.py
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/config_machines.xsd
M doc/source/users_guide/create-a-case.rst
M scripts/Tools/Makefile
A scripts/Tools/archive_metadata
M scripts/Tools/case.submit
M scripts/Tools/e3sm_cime_merge
M scripts/Tools/e3sm_cime_split
M scripts/Tools/jenkins_generic_job
M scripts/Tools/preview_run
M scripts/Tools/testreporter.py
M scripts/Tools/wait_for_tests
M scripts/Tools/xmlquery
M scripts/create_newcase
M scripts/data_assimilation/da_no_data_mod.sh
M scripts/lib/CIME/BuildTools/possiblevalues.py
M scripts/lib/CIME/BuildTools/valuesetting.py
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/svn.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/rep.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/batch.py
M scripts/lib/CIME/XML/compilerblock.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/pio.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/compare_test_results.py
A scripts/lib/CIME/cs_status_creator.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/tests/SystemTests/test_utils/test_user_nl_utils.py
M scripts/lib/CIME/tests/test_case_fake.py
M scripts/lib/CIME/tests/test_utils.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/get_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/dwav/mct/wav_comp_mct.F90
M src/drivers/mct/cime_config/config_archive.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/main/seq_map_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/util/mct_mod.F90
M src/share/util/shr_const_mod.F90
M src/share/util/shr_reprosum_mod.F90
A src/share/util/shr_taskmap_mod.F90
======================================================================
======================================================================
Originator:Chris Fischer
Date: 6-25-2018
Tag: cime5.7.0
Answer Changes: None
Tests: scripts_regression_tests
xmllint of env_mach_specific.xml
Dependencies:
Brief Summary:
- Merge in changes from maint-5.6(CESM release) branch.
- Fix issue with e3sm mali file archiving.
- Config compiler parser fix.
- XSD definitions did not match implementation.
- config_compilers.xml updates from e3sm.
- Fix minor issue with recent non-local PR.
- Allow users to go up through the setup phase on non-local machines.
- e3sm st_archive fix for ESP.
- Import fixes and updates from e3sm.
- Update e3sm to compilers v2.
- Maint 5.6 merge to master.
- Add the allow_error flag to schema.
- Fix weird whitespace.
- Improve robustness of compare-two tests.
- Fix find_circular_dependency.py.
- Maint 5.6 merge to master.
- Jgfouca/branch for acme split 2018 05 18.
- Add commas to output using --value.
- Multisubmit tests were not resubmitting.
- New script to add additional metadata for stat ensemble test.
- Fix formatting issue.
- Update iyear for 2000 runs.
- Merge branch 'master' of github.com:ESMCI/cime.
- Add grid neede for cime standalone testing.
- Updated the wrappers for the ESMF mapping tools to work on NCAR machines.
User interface changes:
- New --non-local flag for create_test/create_newcase.
PR summary: git log --oneline --first-parent [previous_tag]..master
6ceaf73 Merge pull request #2690 from ESMCI/maint-5.6
aeaac31 Merge pull request #2683 from jedwards4b/e3sm_st_archive_fix
b78593b Merge pull request #2671 from jedwards4b/config_compiler_test
58a5e43 Merge pull request #2670 from ESMCI/jgfouca/fix_directive_selection
95fe393 config_compilers.xml updates from e3sm
4888867 Fix minor issue with recent non-local PR
43a6812 Merge pull request #2665 from ESMCI/jgfouca/allow_non_local_machine_setup
8a2f9d5 Merge pull request #2663 from jedwards4b/e3sm_st_archive
22ab62b Merge pull request #2661 from ESMCI/jgfouca/fix_e3sm_compilers
18f23fc Merge pull request #2655 from ESMCI/jgfouca/update_e3sm_to_compilersv2
c1eff51 Merge pull request #2657 from ESMCI/maint-5.6
6b01d3b Merge pull request #2654 from jedwards4b/validate_allow_error
8e4054b Fix weird whitespace
ed9d13b Merge pull request #2635 from ESMCI/jgfouca/preemptively_add_compare_pend
3d65363 Merge pull request #2630 from gold2718/fix_circular
5dd50b1 Merge pull request #2627 from ESMCI/maint-5.6
6933518 Merge pull request #2613 from ESMCI/jgfouca/branch-for-acme-split-2018-05-18
2e997e0 Merge pull request #2607 from jedwards4b/xmlquery_multivalue
f1d501f Merge pull request #2600 from jedwards4b/test_issues
5c256ec Merge pull request #2582 from jedwards4b/stattest_add_metadata
8ce38a4 fix formatting issue
6c53cfc Merge pull request #2594 from jedwards4b/orb_iyear_2000
c04da3c Merge branch 'master' of github.com:ESMCI/cime
166a40c these grids are needed for cime standalone testing
7cef855 Merge pull request #2589 from mnlevy1981/mlevy/mapping_on_geyser
Modified files: git diff --name-status [previous_tag]
M .gitignore
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
M config/cesm/machines/template.st_archive
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/template.st_archive
M config/xml_schemas/config_batch.xsd
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/testlist.xsd
M doc/Makefile
M doc/README
D doc/source/README
M doc/source/conf.py
M doc/source/users_guide/building-a-case.rst
A doc/source/users_guide/cime-change-namelist.rst
A doc/source/users_guide/cime-dir.rst
M doc/source/users_guide/cloning-a-case.rst
M doc/source/users_guide/compsets.rst
M doc/source/users_guide/create-a-case.rst
M doc/source/users_guide/grids.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/machine.rst
M doc/source/users_guide/pes-threads.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/setting-up-a-case.rst
M doc/source/users_guide/testing.rst
M doc/source/users_guide/timers.rst
M doc/source/users_guide/troubleshooting.rst
M doc/source/users_guide/unit_testing.rst
D doc/source/users_guide/use_cases/basics-a-basic-example.rst
D doc/source/users_guide/use_cases/basics-setting-up-a-branch-or-hybrid-run.rst
D doc/source/users_guide/use_cases/cesm-nml.rst
D doc/source/users_guide/use_cases/datamod-nml.rst
D doc/source/users_guide/use_cases/driver-nml.rst
D doc/source/users_guide/use_cases/namelist-gen.rst
D doc/source/users_guide/use_cases/use-cases.rst
A doc/source/users_guide/workflows.rst
M doc/tools_autodoc.cfg
M doc/tools_autodoc.py
M scripts/Tools/Makefile
M scripts/Tools/xmlquery
M scripts/create_newcase
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/BuildTools/possiblevalues.py
M scripts/lib/CIME/Servers/gftp.py
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/compilerblock.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
D scripts/manage_pes
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/datm/datm_comp_mod.F90
M src/components/data_comps/datm/mct/atm_comp_mct.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/externals/pio1/pio/box_rearrange.F90.in
M src/externals/pio1/pio/pio_support.F90
M src/externals/pio1/pio/piolib_mod.F90
M tools/mapping/check_maps/README
M tools/mapping/check_maps/check_map.sh
M tools/mapping/check_maps/src/ESMF_RegridWeightGenCheck.F90
M tools/mapping/check_maps/src/Makefile
M tools/mapping/gen_domain_files/src/.gitignore
M tools/mapping/gen_domain_files/src/Makefile
A tools/mapping/gen_mapping_files/.gitignore