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Update example_metadata_spec.json
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tombch authored Feb 2, 2024
1 parent a75559b commit bc8ef8a
Showing 1 changed file with 62 additions and 66 deletions.
128 changes: 62 additions & 66 deletions metadata/example_metadata_spec.json
Original file line number Diff line number Diff line change
@@ -1,77 +1,73 @@
{
"status": "success",
"code": 200,
"data": {
"country": {
"description": "Oceania/Eurasia/Eastasia",
"type": "choice",
"required": false,
"values": [
"OCE",
"EUR",
"EAS"
]
},
"batch_id": {
"description": "Used to identify samples prepared in the same laboratory batch (e.g. extraction, library and/or sequencing).",
"type": "text",
"required": false
"country": {
"description": "Oceania/Eurasia/Eastasia",
"type": "choice",
"required": false,
"values": [
"OCE",
"EUR",
"EAS"
]
},
"batch_id": {
"description": "Used to identify samples prepared in the same laboratory batch (e.g. extraction, library and/or sequencing).",
"type": "text",
"required": false
},
"biosample_source_id": {
"description": "Unique identifier for an individual to permit multiple samples from the same individual to be linked.",
"type": "text",
"required": false
},
"collection_date": {
"description": "The date the sample was collected.",
"type": "date",
"required": false,
"format": "YYYY-MM"
},
"run_name": {
"description": "The unique identifier assigned to the run by the sequencing instrument.",
"type": "hash",
"required": true
},
"sample_id": {
"description": "The sequencing providers identifier for the sequenced sample.",
"type": "hash",
"required": true
},
"sample_latitude": {
"description": "",
"type": "numeric",
"required": false,
"format": "decimal"
},
"sample_longitude": {
"description": "",
"type": "numeric",
"required": false,
"format": "decimal"
},
"taxa": {
"avg_quality": {
"description": "",
"type": "numeric",
"required": true,
"format": "decimal"
},
"biosample_source_id": {
"description": "Unique identifier for an individual to permit multiple samples from the same individual to be linked.",
"fastq_1": {
"description": "",
"type": "text",
"required": false
},
"collection_date": {
"description": "The date the sample was collected.",
"type": "date",
"required": false,
"format": "YYYY-MM"
},
"run_name": {
"description": "The unique identifier assigned to the run by the sequencing instrument.",
"type": "hash",
"required": true
},
"sample_id": {
"description": "The sequencing providers identifier for the sequenced sample.",
"type": "hash",
"required": true
},
"sample_latitude": {
"fastq_2": {
"description": "",
"type": "numeric",
"required": false,
"format": "decimal"
"type": "text",
"required": false
},
"sample_longitude": {
"human_readable": {
"description": "",
"type": "numeric",
"required": false,
"format": "decimal"
},
"taxa": {
"avg_quality": {
"description": "",
"type": "numeric",
"required": true,
"format": "decimal"
},
"fastq_1": {
"description": "",
"type": "text",
"required": true
},
"fastq_2": {
"description": "",
"type": "text",
"required": false
},
"human_readable": {
"description": "",
"type": "text",
"required": true
}
"type": "text",
"required": true
}
}
}

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