Skip to content
@COMBAT-TB

combatTB

Comprehensive Bacterial Analytical ToolKit for Tuberculosis (TB) Research (and related projects)

Pinned Loading

  1. combat-tb-neodb combat-tb-neodb Public

    🐳 combatTB Neo4j Database

    HTML 1 1

  2. tbvcfreport tbvcfreport Public

    Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)

    Python 2 2

  3. combattbmodel combattbmodel Public

    COMBAT-TB model is a Chado inspired graph model for genome annotation.

    Python 2 1

  4. irida-galaxy-deploy irida-galaxy-deploy Public

    🐳 Deploying IRIDA and Galaxy all in one server/VM using Docker or Terraform

    HTML 3 4

  5. neo4j-galaxy-ie neo4j-galaxy-ie Public

    🐳 Neo4j Galaxy IE

    Shell 2

  6. tb_variant_filter tb_variant_filter Public

    A tool for filtering VCF files (relative to M. tuberculosis H37Rv)

    Python 6 1

Repositories

Showing 10 of 29 repositories
  • tbvcfreport Public

    Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)

    COMBAT-TB/tbvcfreport’s past year of commit activity
    Python 2 GPL-3.0 2 1 (1 issue needs help) 0 Updated Jun 7, 2024
  • tb_variant_filter Public

    A tool for filtering VCF files (relative to M. tuberculosis H37Rv)

    COMBAT-TB/tb_variant_filter’s past year of commit activity
    Python 6 GPL-3.0 1 4 1 Updated Nov 21, 2023
  • COMBAT-TB/deploy_explorer_neodb’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated May 20, 2023
  • vcf2neo Public

    A tool to import SnpEff annotated files to a Neo4j Graph database

    COMBAT-TB/vcf2neo’s past year of commit activity
    Python 3 GPL-3.0 2 0 3 Updated Dec 8, 2022
  • tb2neo Public

    A tool to aggregate and load TB data to Neo4j

    COMBAT-TB/tb2neo’s past year of commit activity
    Python 1 GPL-3.0 0 3 (2 issues need help) 3 Updated Dec 8, 2022
  • combat-tb.github.io Public

    COMBAT-TB Website

    COMBAT-TB/combat-tb.github.io’s past year of commit activity
    CSS 0 2 0 0 Updated Aug 31, 2022
  • irida-galaxy-deploy Public

    🐳 Deploying IRIDA and Galaxy all in one server/VM using Docker or Terraform

    COMBAT-TB/irida-galaxy-deploy’s past year of commit activity
    HTML 3 Apache-2.0 4 4 0 Updated Aug 11, 2022
  • irida-plugin-builder Public

    Build an IRIDA plugin

    COMBAT-TB/irida-plugin-builder’s past year of commit activity
    Shell 1 Apache-2.0 0 0 0 Updated May 22, 2022
  • irida-plugin-tb-sample-report Public

    M. tuberculosis Variant and Drug Resistance Analysis

    COMBAT-TB/irida-plugin-tb-sample-report’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Sep 28, 2021
  • COMBAT-TB/combattbworkbench-docs’s past year of commit activity
    0 CC-BY-4.0 0 0 0 Updated Sep 27, 2021

Top languages

Loading…

Most used topics

Loading…