You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I received an error which is very similar to issue #72.
Error in during gap_filling. Please see /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/gap_filling.err for details.
Error during tilling generation. Please see /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/tilling_1.out and /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/tilling_1.err for details.
rm: cannot remove ‘/public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/QUERY’: No such file or directory
rm: cannot remove ‘/public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/REF’: No such file or directory
mkdir /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/REF
*** split /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/consensus.fa
mkdir /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/QUERY
*** split /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/megahit_assembly/final.contigs.fa
*** run the mummer mapping
rm -r /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/mummer
rm: cannot remove ‘/public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/mummer’: No such file or directory
mkdir /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/mummer
cat /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/mummer/cmd_delta.txt | xargs -I cmd --max-procs=64 bash -c cmd > /dev/null
xargs: bash: exited with status 255; aborting
xargs: bash: exited with status 255; aborting
Error in during nucmer.
Feel free to inform me if you require additional logs or further details.
Thanks for your help.
The text was updated successfully, but these errors were encountered:
sorry to hear you have an issue with our assembler. Did you try to run one of the command line provided in /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/mummer/cmd_delta.txt?
Hello OPERA-MS Team,
I received an error which is very similar to issue #72.
Error in during gap_filling. Please see /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/gap_filling.err for details.
Error during tilling generation. Please see /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/tilling_1.out and /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/tilling_1.err for details.
rm -r /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/QUERY /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/REF
rm: cannot remove ‘/public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/QUERY’: No such file or directory
rm: cannot remove ‘/public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/REF’: No such file or directory
mkdir /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/REF
*** split /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/consensus.fa
mkdir /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/TILLING/QUERY
*** split /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/megahit_assembly/final.contigs.fa
*** run the mummer mapping
rm -r /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/mummer
rm: cannot remove ‘/public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/mummer’: No such file or directory
mkdir /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/mummer
cat /public/hyrothermalS/ouyangyt/01.data/01.Graduation_Design/03.OPERA_MS_hybrid_assemble/01.CK/intermediate_files/opera_long_read/GAPFILLING/mummer/cmd_delta.txt | xargs -I cmd --max-procs=64 bash -c cmd > /dev/null
xargs: bash: exited with status 255; aborting
xargs: bash: exited with status 255; aborting
Error in during nucmer.
Feel free to inform me if you require additional logs or further details.
Thanks for your help.
The text was updated successfully, but these errors were encountered: