Initialize repository and test bioprocess, gene, and metapath data ex… #3
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| --- | |
| # used for running tests | |
| name: tests | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| pre_commit_checks: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| # checks out the repo | |
| - uses: actions/checkout@v4 | |
| # run pre-commit | |
| - name: Python setup | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - uses: pre-commit/action@v3.0.1 | |
| run_tests: | |
| strategy: | |
| matrix: | |
| python_version: ["3.11", "3.12"] | |
| os: [ubuntu-22.04, macos-13] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| OS: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Python setup | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| - name: Setup for uv | |
| run: | | |
| python -m pip install uv | |
| - name: Install environment | |
| run: uv run poe setup | |
| - name: Run pytest | |
| run: uv run pytest |