From 1a6dd78918e5f10748202f8f0ee8e95db6a55280 Mon Sep 17 00:00:00 2001 From: d33bs Date: Tue, 5 Nov 2024 17:10:29 -0700 Subject: [PATCH 01/11] add initial files and work --- .github/workflows/run-tests.yml | 49 + .gitignore | 3 + .pre-commit-config.yaml | 44 + README.md | 10 +- pyproject.toml | 81 + .../data/sources/BP.csv | 11382 +++++++++ .../data/sources/Gene.csv | 20946 ++++++++++++++++ .../data/sources/metapaths.csv | 53 + .../data/sources/metapaths_ignore.csv | 6 + .../gather_data.ipynb | 492 + .../readme.md | 6 + src/hetionet_utils/database.py | 102 + tests/conftest.py | 25 + tests/test_database.py | 68 + uv.lock | 2108 ++ 15 files changed, 35374 insertions(+), 1 deletion(-) create mode 100644 .github/workflows/run-tests.yml create mode 100644 .pre-commit-config.yaml create mode 100644 pyproject.toml create mode 100644 src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/BP.csv create mode 100644 src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/Gene.csv create mode 100644 src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/metapaths.csv create mode 100644 src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/metapaths_ignore.csv create mode 100644 src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb create mode 100644 src/bioprocess_metapath_to_gene_pval_and_dwpc/readme.md create mode 100644 src/hetionet_utils/database.py create mode 100644 tests/conftest.py create mode 100644 tests/test_database.py create mode 100644 uv.lock diff --git a/.github/workflows/run-tests.yml b/.github/workflows/run-tests.yml new file mode 100644 index 0000000..4ea128b --- /dev/null +++ b/.github/workflows/run-tests.yml @@ -0,0 +1,49 @@ +--- +# used for running tests +name: tests + +on: + push: + branches: [main] + pull_request: + branches: [main] + +jobs: + pre_commit_checks: + runs-on: ubuntu-22.04 + steps: + # checks out the repo + - uses: actions/checkout@v4 + # run pre-commit + - name: Python setup + uses: actions/setup-python@v5 + with: + python-version: "3.11" + - name: Setup for poetry + run: | + python -m pip install poetry + - name: Install environment + run: poetry install --no-interaction --no-ansi + - uses: pre-commit/action@v3.0.1 + run_tests: + strategy: + matrix: + python_version: ["3.11", "3.12"] + os: [ubuntu-22.04, macos-13] + runs-on: ${{ matrix.os }} + env: + OS: ${{ matrix.os }} + steps: + - name: Checkout + uses: actions/checkout@v4 + - name: Python setup + uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python_version }} + - name: Setup for uv + run: | + python -m pip install uv + - name: Install environment + run: uv run poe setup + - name: Run pytest + run: uv run pytest diff --git a/.gitignore b/.gitignore index 82f9275..5a40fe9 100644 --- a/.gitignore +++ b/.gitignore @@ -160,3 +160,6 @@ cython_debug/ # and can be added to the global gitignore or merged into this file. For a more nuclear # option (not recommended) you can uncomment the following to ignore the entire idea folder. #.idea/ + +# data ignores +src/bioprocess_metapath_to_gene_pval_and_dwpc/data/results diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..79745e3 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,44 @@ +# See https://pre-commit.com for more information +# See https://pre-commit.com/hooks.html for more hooks +default_language_version: + python: python3.11 +repos: + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v5.0.0 + hooks: + - id: trailing-whitespace + - id: end-of-file-fixer + - id: check-yaml + - id: check-added-large-files + - id: detect-private-key + - repo: https://github.com/tox-dev/pyproject-fmt + rev: "v2.5.0" + hooks: + - id: pyproject-fmt + - repo: https://github.com/codespell-project/codespell + rev: v2.3.0 + hooks: + - id: codespell + exclude: | + (?x)^( + .*\.lock + )$ + - repo: https://github.com/executablebooks/mdformat + rev: 0.7.18 + hooks: + - id: mdformat + additional_dependencies: + - mdformat-gfm + - repo: https://github.com/adrienverge/yamllint + rev: v1.35.1 + hooks: + - id: yamllint + - repo: https://github.com/astral-sh/ruff-pre-commit + rev: "v0.7.2" + hooks: + - id: ruff-format + - id: ruff + - repo: https://github.com/rhysd/actionlint + rev: v1.7.4 + hooks: + - id: actionlint diff --git a/README.md b/README.md index 187256e..07badad 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,10 @@ -# hetionet-analysis +# Hetionet Analysis + Various data analysis performed using Hetionet, a hetnet of biomedical knowledge. + +## Development + +1. [Install `uv`](https://docs.astral.sh/uv/getting-started/installation/). +1. Install package locally (e.g. `uv pip install -e ".[dev]"`). +1. Run tests (e.g. `uv run poe test`, through [poethepoet](https://poethepoet.natn.io/index.html) task). +1. Build dynamically versioned distribution (e.g. `uv build`). diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..987bc86 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,81 @@ +[build-system] +build-backend = "setuptools.build_meta" +requires = [ "setuptools>=64", "setuptools-scm>=8" ] + +[project] +name = "hetnet-analysis" +description = "Demonstrating Pythonic uv usage with dynamic versioning." +readme = "README.md" +requires-python = ">=3.11" +classifiers = [ + "Programming Language :: Python :: 3 :: Only", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", +] +dynamic = [ "version" ] +dependencies = [ + "black>=24.10.0", + "hetmatpy>=0.1.0", + "ipywidgets>=8.1.5", + "isort>=5.13.2", + "jupyterlab-code-formatter>=3.0.2", + "jupyterlab>=4.3.0", + "jupytext>=1.16.4", + "lancedb>=0.15.0", + "neo4j>=5.26.0", + "requests>=2.32.3", +] + +[tool.setuptools_scm] +root = "." + +[tool.ruff] +target-version = "py38" +line-length = 88 +fix = true +lint.select = [ + # flake8-builtins + "A", + # flake8-annotations + "ANN", + # flake8-comprehensions + "C4", + # mccabe + "C90", + # pycodestyle + "E", + # pyflakes + "F", + # isort + "I", + # pylint + "PL", + # ruff + "RUF", + # flake8-simplify + "SIM", + "W", +] + +# Ignore `E402` and `F401` (unused imports) in all `__init__.py` files +lint.per-file-ignores."__init__.py" = [ "F401" ] + +[tool.uv] +dev-dependencies = [ + "setuptools-scm>=8.1.0", + "poethepoet>=0.29", + "pre-commit>=4.0.1", + "pytest>=8.3.3", +] + +[tool.poe.tasks] +# install the project for development purposes +setup.shell = """ +uv pip install '.[dev]' +# run testing on development source +""" +test.shell = """ +uv run pre-commit run -a +uv run pytest +""" diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/BP.csv b/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/BP.csv new file mode 100644 index 0000000..b5e1c44 --- /dev/null +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/BP.csv @@ -0,0 +1,11382 @@ +id,name +GO:0000002,mitochondrial genome maintenance +GO:0000012,single strand break repair +GO:0000018,regulation of DNA recombination +GO:0000019,regulation of mitotic recombination +GO:0000022,mitotic spindle elongation +GO:0000023,maltose metabolic process +GO:0000027,ribosomal large subunit assembly +GO:0000028,ribosomal small subunit assembly +GO:0000032,cell wall mannoprotein biosynthetic process +GO:0000038,very long-chain fatty acid metabolic process +GO:0000041,transition metal ion transport +GO:0000042,protein targeting to Golgi +GO:0000045,autophagosome assembly +GO:0000050,urea cycle +GO:0000052,citrulline metabolic process +GO:0000054,ribosomal subunit export from nucleus +GO:0000055,ribosomal large subunit export from nucleus +GO:0000056,ribosomal small subunit export from nucleus +GO:0000059,"protein import into nucleus, docking" +GO:0000060,"protein import into nucleus, translocation" +GO:0000070,mitotic sister chromatid segregation +GO:0000075,cell cycle checkpoint +GO:0000076,DNA replication checkpoint +GO:0000077,DNA damage checkpoint +GO:0000079,regulation of cyclin-dependent protein serine/threonine kinase activity +GO:0000082,G1/S transition of mitotic cell cycle +GO:0000083,regulation of transcription involved in G1/S transition of mitotic cell cycle +GO:0000086,G2/M transition of mitotic cell cycle +GO:0000096,sulfur amino acid metabolic process +GO:0000097,sulfur amino acid biosynthetic process +GO:0000098,sulfur amino acid catabolic process +GO:0000101,sulfur amino acid transport +GO:0000103,sulfate assimilation +GO:0000105,histidine biosynthetic process +GO:0000122,negative regulation of transcription from RNA polymerase II promoter +GO:0000132,establishment of mitotic spindle orientation +GO:0000154,rRNA modification +GO:0000160,phosphorelay signal transduction system +GO:0000165,MAPK cascade +GO:0000183,chromatin silencing at rDNA +GO:0000184,"nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" +GO:0000185,activation of MAPKKK activity +GO:0000186,activation of MAPKK activity +GO:0000187,activation of MAPK activity +GO:0000188,inactivation of MAPK activity +GO:0000189,MAPK import into nucleus +GO:0000209,protein polyubiquitination +GO:0000212,meiotic spindle organization +GO:0000226,microtubule cytoskeleton organization +GO:0000244,spliceosomal tri-snRNP complex assembly +GO:0000245,spliceosomal complex assembly +GO:0000255,allantoin metabolic process +GO:0000266,mitochondrial fission +GO:0000270,peptidoglycan metabolic process +GO:0000271,polysaccharide biosynthetic process +GO:0000272,polysaccharide catabolic process +GO:0000278,mitotic cell cycle +GO:0000280,nuclear division +GO:0000281,mitotic cytokinesis +GO:0000288,"nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" +GO:0000289,nuclear-transcribed mRNA poly(A) tail shortening +GO:0000290,deadenylation-dependent decapping of nuclear-transcribed mRNA +GO:0000291,"nuclear-transcribed mRNA catabolic process, exonucleolytic" +GO:0000294,"nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay" +GO:0000301,"retrograde transport, vesicle recycling within Golgi" +GO:0000302,response to reactive oxygen species +GO:0000303,response to superoxide +GO:0000305,response to oxygen radical +GO:0000320,re-entry into mitotic cell cycle +GO:0000338,protein deneddylation +GO:0000350,generation of catalytic spliceosome for second transesterification step +GO:0000354,cis assembly of pre-catalytic spliceosome +GO:0000375,"RNA splicing, via transesterification reactions" +GO:0000377,"RNA splicing, via transesterification reactions with bulged adenosine as nucleophile" +GO:0000379,tRNA-type intron splice site recognition and cleavage +GO:0000380,"alternative mRNA splicing, via spliceosome" +GO:0000381,"regulation of alternative mRNA splicing, via spliceosome" +GO:0000387,spliceosomal snRNP assembly +GO:0000389,mRNA 3'-splice site recognition +GO:0000393,spliceosomal conformational changes to generate catalytic conformation +GO:0000394,"RNA splicing, via endonucleolytic cleavage and ligation" +GO:0000395,mRNA 5'-splice site recognition +GO:0000398,"mRNA splicing, via spliceosome" +GO:0000413,protein peptidyl-prolyl isomerization +GO:0000414,regulation of histone H3-K36 methylation +GO:0000422,mitophagy +GO:0000423,macromitophagy +GO:0000429,carbon catabolite regulation of transcription from RNA polymerase II promoter +GO:0000430,regulation of transcription from RNA polymerase II promoter by glucose +GO:0000432,positive regulation of transcription from RNA polymerase II promoter by glucose +GO:0000436,carbon catabolite activation of transcription from RNA polymerase II promoter +GO:0000447,"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" +GO:0000448,"cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" +GO:0000451,rRNA 2'-O-methylation +GO:0000453,enzyme-directed rRNA 2'-O-methylation +GO:0000459,exonucleolytic trimming involved in rRNA processing +GO:0000460,maturation of 5.8S rRNA +GO:0000461,"endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" +GO:0000462,"maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" +GO:0000463,"maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" +GO:0000466,"maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" +GO:0000467,"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" +GO:0000469,cleavage involved in rRNA processing +GO:0000470,maturation of LSU-rRNA +GO:0000472,"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" +GO:0000478,endonucleolytic cleavage involved in rRNA processing +GO:0000479,"endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" +GO:0000480,"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" +GO:0000491,small nucleolar ribonucleoprotein complex assembly +GO:0000492,box C/D snoRNP assembly +GO:0000578,embryonic axis specification +GO:0000707,meiotic DNA recombinase assembly +GO:0000711,meiotic DNA repair synthesis +GO:0000712,resolution of meiotic recombination intermediates +GO:0000715,"nucleotide-excision repair, DNA damage recognition" +GO:0000720,pyrimidine dimer repair by nucleotide-excision repair +GO:0000722,telomere maintenance via recombination +GO:0000723,telomere maintenance +GO:0000724,double-strand break repair via homologous recombination +GO:0000725,recombinational repair +GO:0000726,non-recombinational repair +GO:0000727,double-strand break repair via break-induced replication +GO:0000729,DNA double-strand break processing +GO:0000730,DNA recombinase assembly +GO:0000731,DNA synthesis involved in DNA repair +GO:0000733,DNA strand renaturation +GO:0000737,"DNA catabolic process, endonucleolytic" +GO:0000738,"DNA catabolic process, exonucleolytic" +GO:0000768,syncytium formation by plasma membrane fusion +GO:0000819,sister chromatid segregation +GO:0000820,regulation of glutamine family amino acid metabolic process +GO:0000821,regulation of arginine metabolic process +GO:0000904,cell morphogenesis involved in differentiation +GO:0000910,cytokinesis +GO:0000917,barrier septum assembly +GO:0000920,cell separation after cytokinesis +GO:0000956,nuclear-transcribed mRNA catabolic process +GO:0000957,mitochondrial RNA catabolic process +GO:0000958,mitochondrial mRNA catabolic process +GO:0000959,mitochondrial RNA metabolic process +GO:0000960,regulation of mitochondrial RNA catabolic process +GO:0000961,negative regulation of mitochondrial RNA catabolic process +GO:0000962,positive regulation of mitochondrial RNA catabolic process +GO:0000963,mitochondrial RNA processing +GO:0000964,mitochondrial RNA 5'-end processing +GO:0000965,mitochondrial RNA 3'-end processing +GO:0000966,RNA 5'-end processing +GO:0000967,rRNA 5'-end processing +GO:0000972,transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery +GO:0000973,posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery +GO:0001101,response to acid chemical +GO:0001172,"transcription, RNA-templated" +GO:0001180,transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript +GO:0001188,RNA polymerase I transcriptional preinitiation complex assembly +GO:0001189,RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript +GO:0001300,chronological cell aging +GO:0001302,replicative cell aging +GO:0001306,age-dependent response to oxidative stress +GO:0001501,skeletal system development +GO:0001502,cartilage condensation +GO:0001503,ossification +GO:0001504,neurotransmitter uptake +GO:0001505,regulation of neurotransmitter levels +GO:0001507,acetylcholine catabolic process in synaptic cleft +GO:0001508,action potential +GO:0001510,RNA methylation +GO:0001514,selenocysteine incorporation +GO:0001516,prostaglandin biosynthetic process +GO:0001519,peptide amidation +GO:0001522,pseudouridine synthesis +GO:0001523,retinoid metabolic process +GO:0001525,angiogenesis +GO:0001539,cilium or flagellum-dependent cell motility +GO:0001541,ovarian follicle development +GO:0001542,ovulation from ovarian follicle +GO:0001543,ovarian follicle rupture +GO:0001546,preantral ovarian follicle growth +GO:0001547,antral ovarian follicle growth +GO:0001550,ovarian cumulus expansion +GO:0001552,ovarian follicle atresia +GO:0001553,luteinization +GO:0001554,luteolysis +GO:0001555,oocyte growth +GO:0001556,oocyte maturation +GO:0001558,regulation of cell growth +GO:0001560,regulation of cell growth by extracellular stimulus +GO:0001561,fatty acid alpha-oxidation +GO:0001562,response to protozoan +GO:0001568,blood vessel development +GO:0001569,patterning of blood vessels +GO:0001570,vasculogenesis +GO:0001573,ganglioside metabolic process +GO:0001574,ganglioside biosynthetic process +GO:0001575,globoside metabolic process +GO:0001578,microtubule bundle formation +GO:0001579,medium-chain fatty acid transport +GO:0001580,detection of chemical stimulus involved in sensory perception of bitter taste +GO:0001581,detection of chemical stimulus involved in sensory perception of sour taste +GO:0001582,detection of chemical stimulus involved in sensory perception of sweet taste +GO:0001649,osteoblast differentiation +GO:0001654,eye development +GO:0001655,urogenital system development +GO:0001656,metanephros development +GO:0001657,ureteric bud development +GO:0001658,branching involved in ureteric bud morphogenesis +GO:0001659,temperature homeostasis +GO:0001660,fever generation +GO:0001661,conditioned taste aversion +GO:0001662,behavioral fear response +GO:0001666,response to hypoxia +GO:0001667,ameboidal-type cell migration +GO:0001672,regulation of chromatin assembly or disassembly +GO:0001675,acrosome assembly +GO:0001676,long-chain fatty acid metabolic process +GO:0001678,cellular glucose homeostasis +GO:0001692,histamine metabolic process +GO:0001694,histamine biosynthetic process +GO:0001696,gastric acid secretion +GO:0001701,in utero embryonic development +GO:0001702,gastrulation with mouth forming second +GO:0001704,formation of primary germ layer +GO:0001705,ectoderm formation +GO:0001706,endoderm formation +GO:0001707,mesoderm formation +GO:0001708,cell fate specification +GO:0001709,cell fate determination +GO:0001710,mesodermal cell fate commitment +GO:0001711,endodermal cell fate commitment +GO:0001712,ectodermal cell fate commitment +GO:0001714,endodermal cell fate specification +GO:0001731,formation of translation preinitiation complex +GO:0001732,formation of cytoplasmic translation initiation complex +GO:0001736,establishment of planar polarity +GO:0001738,morphogenesis of a polarized epithelium +GO:0001743,optic placode formation +GO:0001754,eye photoreceptor cell differentiation +GO:0001755,neural crest cell migration +GO:0001756,somitogenesis +GO:0001757,somite specification +GO:0001759,organ induction +GO:0001763,morphogenesis of a branching structure +GO:0001764,neuron migration +GO:0001765,membrane raft assembly +GO:0001766,membrane raft polarization +GO:0001767,establishment of lymphocyte polarity +GO:0001768,establishment of T cell polarity +GO:0001771,immunological synapse formation +GO:0001773,myeloid dendritic cell activation +GO:0001774,microglial cell activation +GO:0001775,cell activation +GO:0001776,leukocyte homeostasis +GO:0001778,plasma membrane repair +GO:0001779,natural killer cell differentiation +GO:0001780,neutrophil homeostasis +GO:0001781,neutrophil apoptotic process +GO:0001782,B cell homeostasis +GO:0001783,B cell apoptotic process +GO:0001796,regulation of type IIa hypersensitivity +GO:0001798,positive regulation of type IIa hypersensitivity +GO:0001807,regulation of type IV hypersensitivity +GO:0001808,negative regulation of type IV hypersensitivity +GO:0001810,regulation of type I hypersensitivity +GO:0001812,positive regulation of type I hypersensitivity +GO:0001816,cytokine production +GO:0001817,regulation of cytokine production +GO:0001818,negative regulation of cytokine production +GO:0001819,positive regulation of cytokine production +GO:0001820,serotonin secretion +GO:0001821,histamine secretion +GO:0001822,kidney development +GO:0001823,mesonephros development +GO:0001824,blastocyst development +GO:0001825,blastocyst formation +GO:0001826,inner cell mass cell differentiation +GO:0001827,inner cell mass cell fate commitment +GO:0001828,inner cell mass cellular morphogenesis +GO:0001829,trophectodermal cell differentiation +GO:0001831,trophectodermal cellular morphogenesis +GO:0001832,blastocyst growth +GO:0001833,inner cell mass cell proliferation +GO:0001834,trophectodermal cell proliferation +GO:0001835,blastocyst hatching +GO:0001836,release of cytochrome c from mitochondria +GO:0001837,epithelial to mesenchymal transition +GO:0001838,embryonic epithelial tube formation +GO:0001839,neural plate morphogenesis +GO:0001840,neural plate development +GO:0001841,neural tube formation +GO:0001842,neural fold formation +GO:0001843,neural tube closure +GO:0001844,protein insertion into mitochondrial membrane involved in apoptotic signaling pathway +GO:0001845,phagolysosome assembly +GO:0001865,NK T cell differentiation +GO:0001866,NK T cell proliferation +GO:0001867,"complement activation, lectin pathway" +GO:0001868,"regulation of complement activation, lectin pathway" +GO:0001869,"negative regulation of complement activation, lectin pathway" +GO:0001878,response to yeast +GO:0001880,Mullerian duct regression +GO:0001881,receptor recycling +GO:0001885,endothelial cell development +GO:0001886,endothelial cell morphogenesis +GO:0001887,selenium compound metabolic process +GO:0001889,liver development +GO:0001890,placenta development +GO:0001892,embryonic placenta development +GO:0001893,maternal placenta development +GO:0001894,tissue homeostasis +GO:0001895,retina homeostasis +GO:0001897,cytolysis by symbiont of host cells +GO:0001906,cell killing +GO:0001907,killing by symbiont of host cells +GO:0001909,leukocyte mediated cytotoxicity +GO:0001910,regulation of leukocyte mediated cytotoxicity +GO:0001911,negative regulation of leukocyte mediated cytotoxicity +GO:0001912,positive regulation of leukocyte mediated cytotoxicity +GO:0001913,T cell mediated cytotoxicity +GO:0001914,regulation of T cell mediated cytotoxicity +GO:0001915,negative regulation of T cell mediated cytotoxicity +GO:0001916,positive regulation of T cell mediated cytotoxicity +GO:0001919,regulation of receptor recycling +GO:0001920,negative regulation of receptor recycling +GO:0001921,positive regulation of receptor recycling +GO:0001922,B-1 B cell homeostasis +GO:0001923,B-1 B cell differentiation +GO:0001927,exocyst assembly +GO:0001933,negative regulation of protein phosphorylation +GO:0001934,positive regulation of protein phosphorylation +GO:0001935,endothelial cell proliferation +GO:0001936,regulation of endothelial cell proliferation +GO:0001937,negative regulation of endothelial cell proliferation +GO:0001938,positive regulation of endothelial cell proliferation +GO:0001941,postsynaptic membrane organization +GO:0001942,hair follicle development +GO:0001944,vasculature development +GO:0001945,lymph vessel development +GO:0001946,lymphangiogenesis +GO:0001947,heart looping +GO:0001951,intestinal D-glucose absorption +GO:0001952,regulation of cell-matrix adhesion +GO:0001953,negative regulation of cell-matrix adhesion +GO:0001954,positive regulation of cell-matrix adhesion +GO:0001955,blood vessel maturation +GO:0001956,positive regulation of neurotransmitter secretion +GO:0001957,intramembranous ossification +GO:0001958,endochondral ossification +GO:0001959,regulation of cytokine-mediated signaling pathway +GO:0001960,negative regulation of cytokine-mediated signaling pathway +GO:0001961,positive regulation of cytokine-mediated signaling pathway +GO:0001963,"synaptic transmission, dopaminergic" +GO:0001964,startle response +GO:0001967,suckling behavior +GO:0001969,regulation of activation of membrane attack complex +GO:0001970,positive regulation of activation of membrane attack complex +GO:0001973,adenosine receptor signaling pathway +GO:0001974,blood vessel remodeling +GO:0001975,response to amphetamine +GO:0001976,neurological system process involved in regulation of systemic arterial blood pressure +GO:0001977,renal system process involved in regulation of blood volume +GO:0001978,regulation of systemic arterial blood pressure by carotid sinus baroreceptor feedback +GO:0001982,baroreceptor response to decreased systemic arterial blood pressure +GO:0001983,baroreceptor response to increased systemic arterial blood pressure +GO:0001990,regulation of systemic arterial blood pressure by hormone +GO:0001991,regulation of systemic arterial blood pressure by circulatory renin-angiotensin +GO:0001992,regulation of systemic arterial blood pressure by vasopressin +GO:0001993,regulation of systemic arterial blood pressure by norepinephrine-epinephrine +GO:0001994,norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure +GO:0001996,positive regulation of heart rate by epinephrine-norepinephrine +GO:0001997,positive regulation of the force of heart contraction by epinephrine-norepinephrine +GO:0001999,renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure +GO:0002002,regulation of angiotensin levels in blood +GO:0002003,angiotensin maturation +GO:0002005,angiotensin catabolic process in blood +GO:0002009,morphogenesis of an epithelium +GO:0002011,morphogenesis of an epithelial sheet +GO:0002016,regulation of blood volume by renin-angiotensin +GO:0002017,regulation of blood volume by renal aldosterone +GO:0002018,renin-angiotensin regulation of aldosterone production +GO:0002019,regulation of renal output by angiotensin +GO:0002021,response to dietary excess +GO:0002023,reduction of food intake in response to dietary excess +GO:0002024,diet induced thermogenesis +GO:0002025,vasodilation by norepinephrine-epinephrine involved in regulation of systemic arterial blood pressure +GO:0002026,regulation of the force of heart contraction +GO:0002027,regulation of heart rate +GO:0002028,regulation of sodium ion transport +GO:0002029,desensitization of G-protein coupled receptor protein signaling pathway +GO:0002031,G-protein coupled receptor internalization +GO:0002032,desensitization of G-protein coupled receptor protein signaling pathway by arrestin +GO:0002034,regulation of blood vessel size by renin-angiotensin +GO:0002035,brain renin-angiotensin system +GO:0002036,regulation of L-glutamate transport +GO:0002040,sprouting angiogenesis +GO:0002041,intussusceptive angiogenesis +GO:0002042,cell migration involved in sprouting angiogenesis +GO:0002043,blood vessel endothelial cell proliferation involved in sprouting angiogenesis +GO:0002051,osteoblast fate commitment +GO:0002052,positive regulation of neuroblast proliferation +GO:0002053,positive regulation of mesenchymal cell proliferation +GO:0002062,chondrocyte differentiation +GO:0002063,chondrocyte development +GO:0002064,epithelial cell development +GO:0002065,columnar/cuboidal epithelial cell differentiation +GO:0002066,columnar/cuboidal epithelial cell development +GO:0002067,glandular epithelial cell differentiation +GO:0002068,glandular epithelial cell development +GO:0002069,columnar/cuboidal epithelial cell maturation +GO:0002070,epithelial cell maturation +GO:0002071,glandular epithelial cell maturation +GO:0002072,optic cup morphogenesis involved in camera-type eye development +GO:0002074,extraocular skeletal muscle development +GO:0002076,osteoblast development +GO:0002082,regulation of oxidative phosphorylation +GO:0002084,protein depalmitoylation +GO:0002085,inhibition of neuroepithelial cell differentiation +GO:0002086,diaphragm contraction +GO:0002087,regulation of respiratory gaseous exchange by neurological system process +GO:0002088,lens development in camera-type eye +GO:0002089,lens morphogenesis in camera-type eye +GO:0002090,regulation of receptor internalization +GO:0002091,negative regulation of receptor internalization +GO:0002092,positive regulation of receptor internalization +GO:0002093,auditory receptor cell morphogenesis +GO:0002097,tRNA wobble base modification +GO:0002098,tRNA wobble uridine modification +GO:0002115,store-operated calcium entry +GO:0002118,aggressive behavior +GO:0002121,inter-male aggressive behavior +GO:0002125,maternal aggressive behavior +GO:0002138,retinoic acid biosynthetic process +GO:0002143,tRNA wobble position uridine thiolation +GO:0002155,regulation of thyroid hormone mediated signaling pathway +GO:0002158,osteoclast proliferation +GO:0002159,desmosome assembly +GO:0002175,protein localization to paranode region of axon +GO:0002176,male germ cell proliferation +GO:0002181,cytoplasmic translation +GO:0002183,cytoplasmic translational initiation +GO:0002184,cytoplasmic translational termination +GO:0002190,cap-independent translational initiation +GO:0002192,IRES-dependent translational initiation +GO:0002200,somatic diversification of immune receptors +GO:0002204,somatic recombination of immunoglobulin genes involved in immune response +GO:0002208,somatic diversification of immunoglobulins involved in immune response +GO:0002209,behavioral defense response +GO:0002215,defense response to nematode +GO:0002218,activation of innate immune response +GO:0002220,innate immune response activating cell surface receptor signaling pathway +GO:0002221,pattern recognition receptor signaling pathway +GO:0002223,stimulatory C-type lectin receptor signaling pathway +GO:0002224,toll-like receptor signaling pathway +GO:0002225,positive regulation of antimicrobial peptide production +GO:0002227,innate immune response in mucosa +GO:0002228,natural killer cell mediated immunity +GO:0002230,positive regulation of defense response to virus by host +GO:0002232,leukocyte chemotaxis involved in inflammatory response +GO:0002237,response to molecule of bacterial origin +GO:0002238,response to molecule of fungal origin +GO:0002244,hematopoietic progenitor cell differentiation +GO:0002246,wound healing involved in inflammatory response +GO:0002248,connective tissue replacement involved in inflammatory response wound healing +GO:0002250,adaptive immune response +GO:0002251,organ or tissue specific immune response +GO:0002252,immune effector process +GO:0002253,activation of immune response +GO:0002254,kinin cascade +GO:0002260,lymphocyte homeostasis +GO:0002262,myeloid cell homeostasis +GO:0002263,cell activation involved in immune response +GO:0002266,follicular dendritic cell activation +GO:0002268,follicular dendritic cell differentiation +GO:0002274,myeloid leukocyte activation +GO:0002275,myeloid cell activation involved in immune response +GO:0002277,myeloid dendritic cell activation involved in immune response +GO:0002278,eosinophil activation involved in immune response +GO:0002279,mast cell activation involved in immune response +GO:0002281,macrophage activation involved in immune response +GO:0002282,microglial cell activation involved in immune response +GO:0002283,neutrophil activation involved in immune response +GO:0002285,lymphocyte activation involved in immune response +GO:0002286,T cell activation involved in immune response +GO:0002287,alpha-beta T cell activation involved in immune response +GO:0002291,T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell +GO:0002292,T cell differentiation involved in immune response +GO:0002293,alpha-beta T cell differentiation involved in immune response +GO:0002294,"CD4-positive, alpha-beta T cell differentiation involved in immune response" +GO:0002295,T-helper cell lineage commitment +GO:0002296,T-helper 1 cell lineage commitment +GO:0002302,"CD8-positive, alpha-beta T cell differentiation involved in immune response" +GO:0002309,T cell proliferation involved in immune response +GO:0002312,B cell activation involved in immune response +GO:0002313,mature B cell differentiation involved in immune response +GO:0002314,germinal center B cell differentiation +GO:0002315,marginal zone B cell differentiation +GO:0002317,plasma cell differentiation +GO:0002318,myeloid progenitor cell differentiation +GO:0002320,lymphoid progenitor cell differentiation +GO:0002322,B cell proliferation involved in immune response +GO:0002323,natural killer cell activation involved in immune response +GO:0002326,B cell lineage commitment +GO:0002327,immature B cell differentiation +GO:0002328,pro-B cell differentiation +GO:0002329,pre-B cell differentiation +GO:0002331,pre-B cell allelic exclusion +GO:0002335,mature B cell differentiation +GO:0002337,B-1a B cell differentiation +GO:0002339,B cell selection +GO:0002347,response to tumor cell +GO:0002349,histamine production involved in inflammatory response +GO:0002351,serotonin production involved in inflammatory response +GO:0002352,B cell negative selection +GO:0002353,plasma kallikrein-kinin cascade +GO:0002357,defense response to tumor cell +GO:0002358,B cell homeostatic proliferation +GO:0002360,T cell lineage commitment +GO:0002361,"CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation" +GO:0002363,alpha-beta T cell lineage commitment +GO:0002366,leukocyte activation involved in immune response +GO:0002367,cytokine production involved in immune response +GO:0002369,T cell cytokine production +GO:0002374,cytokine secretion involved in immune response +GO:0002377,immunoglobulin production +GO:0002378,immunoglobulin biosynthetic process +GO:0002381,immunoglobulin production involved in immunoglobulin mediated immune response +GO:0002384,hepatic immune response +GO:0002385,mucosal immune response +GO:0002386,immune response in mucosal-associated lymphoid tissue +GO:0002396,MHC protein complex assembly +GO:0002399,MHC class II protein complex assembly +GO:0002407,dendritic cell chemotaxis +GO:0002408,myeloid dendritic cell chemotaxis +GO:0002414,immunoglobulin transcytosis in epithelial cells +GO:0002415,immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor +GO:0002418,immune response to tumor cell +GO:0002426,immunoglobulin production in mucosal tissue +GO:0002428,antigen processing and presentation of peptide antigen via MHC class Ib +GO:0002429,immune response-activating cell surface receptor signaling pathway +GO:0002430,complement receptor mediated signaling pathway +GO:0002431,Fc receptor mediated stimulatory signaling pathway +GO:0002432,granuloma formation +GO:0002433,immune response-regulating cell surface receptor signaling pathway involved in phagocytosis +GO:0002437,inflammatory response to antigenic stimulus +GO:0002438,acute inflammatory response to antigenic stimulus +GO:0002439,chronic inflammatory response to antigenic stimulus +GO:0002440,production of molecular mediator of immune response +GO:0002441,histamine secretion involved in inflammatory response +GO:0002442,serotonin secretion involved in inflammatory response +GO:0002443,leukocyte mediated immunity +GO:0002444,myeloid leukocyte mediated immunity +GO:0002446,neutrophil mediated immunity +GO:0002447,eosinophil mediated immunity +GO:0002448,mast cell mediated immunity +GO:0002449,lymphocyte mediated immunity +GO:0002455,humoral immune response mediated by circulating immunoglobulin +GO:0002456,T cell mediated immunity +GO:0002457,T cell antigen processing and presentation +GO:0002460,adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains +GO:0002467,germinal center formation +GO:0002474,antigen processing and presentation of peptide antigen via MHC class I +GO:0002475,antigen processing and presentation via MHC class Ib +GO:0002476,antigen processing and presentation of endogenous peptide antigen via MHC class Ib +GO:0002477,antigen processing and presentation of exogenous peptide antigen via MHC class Ib +GO:0002478,antigen processing and presentation of exogenous peptide antigen +GO:0002479,"antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" +GO:0002480,"antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent" +GO:0002481,"antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent" +GO:0002483,antigen processing and presentation of endogenous peptide antigen +GO:0002484,antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway +GO:0002485,"antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent" +GO:0002486,"antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent" +GO:0002488,antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway +GO:0002489,"antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent" +GO:0002495,antigen processing and presentation of peptide antigen via MHC class II +GO:0002501,peptide antigen assembly with MHC protein complex +GO:0002503,peptide antigen assembly with MHC class II protein complex +GO:0002504,antigen processing and presentation of peptide or polysaccharide antigen via MHC class II +GO:0002505,antigen processing and presentation of polysaccharide antigen via MHC class II +GO:0002506,polysaccharide assembly with MHC class II protein complex +GO:0002507,tolerance induction +GO:0002513,tolerance induction to self antigen +GO:0002519,natural killer cell tolerance induction +GO:0002520,immune system development +GO:0002521,leukocyte differentiation +GO:0002522,leukocyte migration involved in immune response +GO:0002523,leukocyte migration involved in inflammatory response +GO:0002526,acute inflammatory response +GO:0002528,regulation of vascular permeability involved in acute inflammatory response +GO:0002532,production of molecular mediator involved in inflammatory response +GO:0002534,cytokine production involved in inflammatory response +GO:0002537,nitric oxide production involved in inflammatory response +GO:0002542,Factor XII activation +GO:0002543,activation of blood coagulation via clotting cascade +GO:0002544,chronic inflammatory response +GO:0002548,monocyte chemotaxis +GO:0002551,mast cell chemotaxis +GO:0002553,histamine secretion by mast cell +GO:0002554,serotonin secretion by platelet +GO:0002562,somatic diversification of immune receptors via germline recombination within a single locus +GO:0002566,somatic diversification of immune receptors via somatic mutation +GO:0002568,somatic diversification of T cell receptor genes +GO:0002572,pro-T cell differentiation +GO:0002573,myeloid leukocyte differentiation +GO:0002576,platelet degranulation +GO:0002577,regulation of antigen processing and presentation +GO:0002578,negative regulation of antigen processing and presentation +GO:0002579,positive regulation of antigen processing and presentation +GO:0002580,regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II +GO:0002581,negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II +GO:0002582,positive regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II +GO:0002583,regulation of antigen processing and presentation of peptide antigen +GO:0002584,negative regulation of antigen processing and presentation of peptide antigen +GO:0002585,positive regulation of antigen processing and presentation of peptide antigen +GO:0002586,regulation of antigen processing and presentation of peptide antigen via MHC class II +GO:0002587,negative regulation of antigen processing and presentation of peptide antigen via MHC class II +GO:0002588,positive regulation of antigen processing and presentation of peptide antigen via MHC class II +GO:0002589,regulation of antigen processing and presentation of peptide antigen via MHC class I +GO:0002590,negative regulation of antigen processing and presentation of peptide antigen via MHC class I +GO:0002591,positive regulation of antigen processing and presentation of peptide antigen via MHC class I +GO:0002604,regulation of dendritic cell antigen processing and presentation +GO:0002606,positive regulation of dendritic cell antigen processing and presentation +GO:0002625,regulation of T cell antigen processing and presentation +GO:0002634,regulation of germinal center formation +GO:0002635,negative regulation of germinal center formation +GO:0002636,positive regulation of germinal center formation +GO:0002637,regulation of immunoglobulin production +GO:0002638,negative regulation of immunoglobulin production +GO:0002639,positive regulation of immunoglobulin production +GO:0002643,regulation of tolerance induction +GO:0002644,negative regulation of tolerance induction +GO:0002645,positive regulation of tolerance induction +GO:0002661,regulation of B cell tolerance induction +GO:0002663,positive regulation of B cell tolerance induction +GO:0002664,regulation of T cell tolerance induction +GO:0002666,positive regulation of T cell tolerance induction +GO:0002667,regulation of T cell anergy +GO:0002669,positive regulation of T cell anergy +GO:0002673,regulation of acute inflammatory response +GO:0002674,negative regulation of acute inflammatory response +GO:0002675,positive regulation of acute inflammatory response +GO:0002676,regulation of chronic inflammatory response +GO:0002677,negative regulation of chronic inflammatory response +GO:0002678,positive regulation of chronic inflammatory response +GO:0002679,respiratory burst involved in defense response +GO:0002681,somatic recombination of T cell receptor gene segments +GO:0002683,negative regulation of immune system process +GO:0002684,positive regulation of immune system process +GO:0002685,regulation of leukocyte migration +GO:0002686,negative regulation of leukocyte migration +GO:0002687,positive regulation of leukocyte migration +GO:0002688,regulation of leukocyte chemotaxis +GO:0002689,negative regulation of leukocyte chemotaxis +GO:0002690,positive regulation of leukocyte chemotaxis +GO:0002691,regulation of cellular extravasation +GO:0002692,negative regulation of cellular extravasation +GO:0002693,positive regulation of cellular extravasation +GO:0002694,regulation of leukocyte activation +GO:0002695,negative regulation of leukocyte activation +GO:0002696,positive regulation of leukocyte activation +GO:0002697,regulation of immune effector process +GO:0002698,negative regulation of immune effector process +GO:0002699,positive regulation of immune effector process +GO:0002700,regulation of production of molecular mediator of immune response +GO:0002701,negative regulation of production of molecular mediator of immune response +GO:0002702,positive regulation of production of molecular mediator of immune response +GO:0002703,regulation of leukocyte mediated immunity +GO:0002704,negative regulation of leukocyte mediated immunity +GO:0002705,positive regulation of leukocyte mediated immunity +GO:0002706,regulation of lymphocyte mediated immunity +GO:0002707,negative regulation of lymphocyte mediated immunity +GO:0002708,positive regulation of lymphocyte mediated immunity +GO:0002709,regulation of T cell mediated immunity +GO:0002710,negative regulation of T cell mediated immunity +GO:0002711,positive regulation of T cell mediated immunity +GO:0002712,regulation of B cell mediated immunity +GO:0002713,negative regulation of B cell mediated immunity +GO:0002714,positive regulation of B cell mediated immunity +GO:0002715,regulation of natural killer cell mediated immunity +GO:0002716,negative regulation of natural killer cell mediated immunity +GO:0002717,positive regulation of natural killer cell mediated immunity +GO:0002718,regulation of cytokine production involved in immune response +GO:0002719,negative regulation of cytokine production involved in immune response +GO:0002720,positive regulation of cytokine production involved in immune response +GO:0002724,regulation of T cell cytokine production +GO:0002725,negative regulation of T cell cytokine production +GO:0002726,positive regulation of T cell cytokine production +GO:0002730,regulation of dendritic cell cytokine production +GO:0002731,negative regulation of dendritic cell cytokine production +GO:0002739,regulation of cytokine secretion involved in immune response +GO:0002740,negative regulation of cytokine secretion involved in immune response +GO:0002741,positive regulation of cytokine secretion involved in immune response +GO:0002752,cell surface pattern recognition receptor signaling pathway +GO:0002753,cytoplasmic pattern recognition receptor signaling pathway +GO:0002755,MyD88-dependent toll-like receptor signaling pathway +GO:0002756,MyD88-independent toll-like receptor signaling pathway +GO:0002757,immune response-activating signal transduction +GO:0002758,innate immune response-activating signal transduction +GO:0002759,regulation of antimicrobial humoral response +GO:0002760,positive regulation of antimicrobial humoral response +GO:0002761,regulation of myeloid leukocyte differentiation +GO:0002762,negative regulation of myeloid leukocyte differentiation +GO:0002763,positive regulation of myeloid leukocyte differentiation +GO:0002764,immune response-regulating signaling pathway +GO:0002765,immune response-inhibiting signal transduction +GO:0002767,immune response-inhibiting cell surface receptor signaling pathway +GO:0002768,immune response-regulating cell surface receptor signaling pathway +GO:0002774,Fc receptor mediated inhibitory signaling pathway +GO:0002775,antimicrobial peptide production +GO:0002778,antibacterial peptide production +GO:0002784,regulation of antimicrobial peptide production +GO:0002786,regulation of antibacterial peptide production +GO:0002790,peptide secretion +GO:0002791,regulation of peptide secretion +GO:0002792,negative regulation of peptide secretion +GO:0002793,positive regulation of peptide secretion +GO:0002803,positive regulation of antibacterial peptide production +GO:0002805,regulation of antimicrobial peptide biosynthetic process +GO:0002807,positive regulation of antimicrobial peptide biosynthetic process +GO:0002808,regulation of antibacterial peptide biosynthetic process +GO:0002816,regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria +GO:0002819,regulation of adaptive immune response +GO:0002820,negative regulation of adaptive immune response +GO:0002821,positive regulation of adaptive immune response +GO:0002822,regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains +GO:0002823,negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains +GO:0002824,positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains +GO:0002825,regulation of T-helper 1 type immune response +GO:0002826,negative regulation of T-helper 1 type immune response +GO:0002827,positive regulation of T-helper 1 type immune response +GO:0002828,regulation of type 2 immune response +GO:0002829,negative regulation of type 2 immune response +GO:0002830,positive regulation of type 2 immune response +GO:0002831,regulation of response to biotic stimulus +GO:0002832,negative regulation of response to biotic stimulus +GO:0002833,positive regulation of response to biotic stimulus +GO:0002834,regulation of response to tumor cell +GO:0002836,positive regulation of response to tumor cell +GO:0002837,regulation of immune response to tumor cell +GO:0002839,positive regulation of immune response to tumor cell +GO:0002840,regulation of T cell mediated immune response to tumor cell +GO:0002855,regulation of natural killer cell mediated immune response to tumor cell +GO:0002857,positive regulation of natural killer cell mediated immune response to tumor cell +GO:0002858,regulation of natural killer cell mediated cytotoxicity directed against tumor cell target +GO:0002860,positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target +GO:0002861,regulation of inflammatory response to antigenic stimulus +GO:0002862,negative regulation of inflammatory response to antigenic stimulus +GO:0002863,positive regulation of inflammatory response to antigenic stimulus +GO:0002864,regulation of acute inflammatory response to antigenic stimulus +GO:0002865,negative regulation of acute inflammatory response to antigenic stimulus +GO:0002866,positive regulation of acute inflammatory response to antigenic stimulus +GO:0002874,regulation of chronic inflammatory response to antigenic stimulus +GO:0002876,positive regulation of chronic inflammatory response to antigenic stimulus +GO:0002877,regulation of acute inflammatory response to non-antigenic stimulus +GO:0002879,positive regulation of acute inflammatory response to non-antigenic stimulus +GO:0002880,regulation of chronic inflammatory response to non-antigenic stimulus +GO:0002883,regulation of hypersensitivity +GO:0002884,negative regulation of hypersensitivity +GO:0002885,positive regulation of hypersensitivity +GO:0002886,regulation of myeloid leukocyte mediated immunity +GO:0002887,negative regulation of myeloid leukocyte mediated immunity +GO:0002888,positive regulation of myeloid leukocyte mediated immunity +GO:0002889,regulation of immunoglobulin mediated immune response +GO:0002890,negative regulation of immunoglobulin mediated immune response +GO:0002891,positive regulation of immunoglobulin mediated immune response +GO:0002892,regulation of type II hypersensitivity +GO:0002894,positive regulation of type II hypersensitivity +GO:0002902,regulation of B cell apoptotic process +GO:0002903,negative regulation of B cell apoptotic process +GO:0002904,positive regulation of B cell apoptotic process +GO:0002905,regulation of mature B cell apoptotic process +GO:0002906,negative regulation of mature B cell apoptotic process +GO:0002911,regulation of lymphocyte anergy +GO:0002913,positive regulation of lymphocyte anergy +GO:0002920,regulation of humoral immune response +GO:0002921,negative regulation of humoral immune response +GO:0002922,positive regulation of humoral immune response +GO:0002923,regulation of humoral immune response mediated by circulating immunoglobulin +GO:0002924,negative regulation of humoral immune response mediated by circulating immunoglobulin +GO:0002925,positive regulation of humoral immune response mediated by circulating immunoglobulin +GO:0002930,trabecular meshwork development +GO:0002931,response to ischemia +GO:0002934,desmosome organization +GO:0002943,tRNA dihydrouridine synthesis +GO:0002949,tRNA threonylcarbamoyladenosine modification +GO:0003002,regionalization +GO:0003006,developmental process involved in reproduction +GO:0003007,heart morphogenesis +GO:0003009,skeletal muscle contraction +GO:0003010,voluntary skeletal muscle contraction +GO:0003011,involuntary skeletal muscle contraction +GO:0003012,muscle system process +GO:0003013,circulatory system process +GO:0003014,renal system process +GO:0003015,heart process +GO:0003016,respiratory system process +GO:0003018,vascular process in circulatory system +GO:0003025,regulation of systemic arterial blood pressure by baroreceptor feedback +GO:0003032,detection of oxygen +GO:0003044,regulation of systemic arterial blood pressure mediated by a chemical signal +GO:0003050,regulation of systemic arterial blood pressure by atrial natriuretic peptide +GO:0003051,angiotensin-mediated drinking behavior +GO:0003056,regulation of vascular smooth muscle contraction +GO:0003057,regulation of the force of heart contraction by chemical signal +GO:0003062,regulation of heart rate by chemical signal +GO:0003064,regulation of heart rate by hormone +GO:0003071,renal system process involved in regulation of systemic arterial blood pressure +GO:0003072,renal control of peripheral vascular resistance involved in regulation of systemic arterial blood pressure +GO:0003073,regulation of systemic arterial blood pressure +GO:0003081,regulation of systemic arterial blood pressure by renin-angiotensin +GO:0003084,positive regulation of systemic arterial blood pressure +GO:0003085,negative regulation of systemic arterial blood pressure +GO:0003091,renal water homeostasis +GO:0003093,regulation of glomerular filtration +GO:0003094,glomerular filtration +GO:0003095,pressure natriuresis +GO:0003096,renal sodium ion transport +GO:0003097,renal water transport +GO:0003099,positive regulation of the force of heart contraction by chemical signal +GO:0003100,regulation of systemic arterial blood pressure by endothelin +GO:0003104,positive regulation of glomerular filtration +GO:0003105,negative regulation of glomerular filtration +GO:0003127,detection of nodal flow +GO:0003128,heart field specification +GO:0003129,heart induction +GO:0003130,BMP signaling pathway involved in heart induction +GO:0003133,endodermal-mesodermal cell signaling +GO:0003134,endodermal-mesodermal cell signaling involved in heart induction +GO:0003139,secondary heart field specification +GO:0003140,determination of left/right asymmetry in lateral mesoderm +GO:0003143,embryonic heart tube morphogenesis +GO:0003148,outflow tract septum morphogenesis +GO:0003149,membranous septum morphogenesis +GO:0003150,muscular septum morphogenesis +GO:0003151,outflow tract morphogenesis +GO:0003156,regulation of organ formation +GO:0003157,endocardium development +GO:0003158,endothelium development +GO:0003159,morphogenesis of an endothelium +GO:0003160,endocardium morphogenesis +GO:0003161,cardiac conduction system development +GO:0003162,atrioventricular node development +GO:0003163,sinoatrial node development +GO:0003164,His-Purkinje system development +GO:0003165,Purkinje myocyte development +GO:0003166,bundle of His development +GO:0003169,coronary vein morphogenesis +GO:0003170,heart valve development +GO:0003171,atrioventricular valve development +GO:0003174,mitral valve development +GO:0003175,tricuspid valve development +GO:0003176,aortic valve development +GO:0003177,pulmonary valve development +GO:0003179,heart valve morphogenesis +GO:0003180,aortic valve morphogenesis +GO:0003181,atrioventricular valve morphogenesis +GO:0003183,mitral valve morphogenesis +GO:0003184,pulmonary valve morphogenesis +GO:0003186,tricuspid valve morphogenesis +GO:0003188,heart valve formation +GO:0003190,atrioventricular valve formation +GO:0003192,mitral valve formation +GO:0003193,pulmonary valve formation +GO:0003195,tricuspid valve formation +GO:0003197,endocardial cushion development +GO:0003198,epithelial to mesenchymal transition involved in endocardial cushion formation +GO:0003199,endocardial cushion to mesenchymal transition involved in heart valve formation +GO:0003203,endocardial cushion morphogenesis +GO:0003205,cardiac chamber development +GO:0003206,cardiac chamber morphogenesis +GO:0003207,cardiac chamber formation +GO:0003208,cardiac ventricle morphogenesis +GO:0003209,cardiac atrium morphogenesis +GO:0003211,cardiac ventricle formation +GO:0003213,cardiac right atrium morphogenesis +GO:0003214,cardiac left ventricle morphogenesis +GO:0003215,cardiac right ventricle morphogenesis +GO:0003218,cardiac left ventricle formation +GO:0003219,cardiac right ventricle formation +GO:0003221,right ventricular cardiac muscle tissue morphogenesis +GO:0003222,ventricular trabecula myocardium morphogenesis +GO:0003223,ventricular compact myocardium morphogenesis +GO:0003228,atrial cardiac muscle tissue development +GO:0003229,ventricular cardiac muscle tissue development +GO:0003230,cardiac atrium development +GO:0003231,cardiac ventricle development +GO:0003241,growth involved in heart morphogenesis +GO:0003245,cardiac muscle tissue growth involved in heart morphogenesis +GO:0003253,cardiac neural crest cell migration involved in outflow tract morphogenesis +GO:0003254,regulation of membrane depolarization +GO:0003256,regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation +GO:0003257,positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation +GO:0003264,regulation of cardioblast proliferation +GO:0003266,regulation of secondary heart field cardioblast proliferation +GO:0003272,endocardial cushion formation +GO:0003273,cell migration involved in endocardial cushion formation +GO:0003278,apoptotic process involved in heart morphogenesis +GO:0003279,cardiac septum development +GO:0003281,ventricular septum development +GO:0003283,atrial septum development +GO:0003284,septum primum development +GO:0003285,septum secundum development +GO:0003289,atrial septum primum morphogenesis +GO:0003290,atrial septum secundum morphogenesis +GO:0003292,cardiac septum cell differentiation +GO:0003294,atrial ventricular junction remodeling +GO:0003298,physiological muscle hypertrophy +GO:0003299,muscle hypertrophy in response to stress +GO:0003300,cardiac muscle hypertrophy +GO:0003301,physiological cardiac muscle hypertrophy +GO:0003306,Wnt signaling pathway involved in heart development +GO:0003307,regulation of Wnt signaling pathway involved in heart development +GO:0003308,negative regulation of Wnt signaling pathway involved in heart development +GO:0003309,type B pancreatic cell differentiation +GO:0003310,pancreatic A cell differentiation +GO:0003312,pancreatic PP cell differentiation +GO:0003321,positive regulation of blood pressure by epinephrine-norepinephrine +GO:0003323,type B pancreatic cell development +GO:0003326,pancreatic A cell fate commitment +GO:0003329,pancreatic PP cell fate commitment +GO:0003330,regulation of extracellular matrix constituent secretion +GO:0003331,positive regulation of extracellular matrix constituent secretion +GO:0003333,amino acid transmembrane transport +GO:0003334,keratinocyte development +GO:0003337,mesenchymal to epithelial transition involved in metanephros morphogenesis +GO:0003338,metanephros morphogenesis +GO:0003339,regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis +GO:0003340,negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis +GO:0003341,cilium movement +GO:0003342,proepicardium development +GO:0003343,septum transversum development +GO:0003344,pericardium morphogenesis +GO:0003348,cardiac endothelial cell differentiation +GO:0003350,pulmonary myocardium development +GO:0003351,epithelial cilium movement +GO:0003352,regulation of cilium movement +GO:0003356,regulation of cilium beat frequency +GO:0003357,noradrenergic neuron differentiation +GO:0003358,noradrenergic neuron development +GO:0003360,brainstem development +GO:0003365,establishment of cell polarity involved in ameboidal cell migration +GO:0003366,cell-matrix adhesion involved in ameboidal cell migration +GO:0003376,sphingosine-1-phosphate signaling pathway +GO:0003382,epithelial cell morphogenesis +GO:0003383,apical constriction +GO:0003401,axis elongation +GO:0003402,planar cell polarity pathway involved in axis elongation +GO:0003404,optic vesicle morphogenesis +GO:0003406,retinal pigment epithelium development +GO:0003407,neural retina development +GO:0003408,optic cup formation involved in camera-type eye development +GO:0003413,chondrocyte differentiation involved in endochondral bone morphogenesis +GO:0003415,chondrocyte hypertrophy +GO:0003416,endochondral bone growth +GO:0003417,growth plate cartilage development +GO:0003418,growth plate cartilage chondrocyte differentiation +GO:0003419,growth plate cartilage chondrocyte proliferation +GO:0003420,regulation of growth plate cartilage chondrocyte proliferation +GO:0003422,growth plate cartilage morphogenesis +GO:0003430,growth plate cartilage chondrocyte growth +GO:0003431,growth plate cartilage chondrocyte development +GO:0003433,chondrocyte development involved in endochondral bone morphogenesis +GO:0005513,detection of calcium ion +GO:0005975,carbohydrate metabolic process +GO:0005976,polysaccharide metabolic process +GO:0005977,glycogen metabolic process +GO:0005978,glycogen biosynthetic process +GO:0005979,regulation of glycogen biosynthetic process +GO:0005980,glycogen catabolic process +GO:0005981,regulation of glycogen catabolic process +GO:0005984,disaccharide metabolic process +GO:0005988,lactose metabolic process +GO:0005989,lactose biosynthetic process +GO:0005996,monosaccharide metabolic process +GO:0005997,xylulose metabolic process +GO:0005999,xylulose biosynthetic process +GO:0006000,fructose metabolic process +GO:0006001,fructose catabolic process +GO:0006002,fructose 6-phosphate metabolic process +GO:0006003,"fructose 2,6-bisphosphate metabolic process" +GO:0006004,fucose metabolic process +GO:0006006,glucose metabolic process +GO:0006007,glucose catabolic process +GO:0006011,UDP-glucose metabolic process +GO:0006012,galactose metabolic process +GO:0006013,mannose metabolic process +GO:0006014,D-ribose metabolic process +GO:0006015,5-phosphoribose 1-diphosphate biosynthetic process +GO:0006020,inositol metabolic process +GO:0006021,inositol biosynthetic process +GO:0006022,aminoglycan metabolic process +GO:0006023,aminoglycan biosynthetic process +GO:0006024,glycosaminoglycan biosynthetic process +GO:0006026,aminoglycan catabolic process +GO:0006027,glycosaminoglycan catabolic process +GO:0006029,proteoglycan metabolic process +GO:0006030,chitin metabolic process +GO:0006032,chitin catabolic process +GO:0006040,amino sugar metabolic process +GO:0006041,glucosamine metabolic process +GO:0006044,N-acetylglucosamine metabolic process +GO:0006045,N-acetylglucosamine biosynthetic process +GO:0006047,UDP-N-acetylglucosamine metabolic process +GO:0006048,UDP-N-acetylglucosamine biosynthetic process +GO:0006050,mannosamine metabolic process +GO:0006051,N-acetylmannosamine metabolic process +GO:0006054,N-acetylneuraminate metabolic process +GO:0006056,mannoprotein metabolic process +GO:0006057,mannoprotein biosynthetic process +GO:0006059,hexitol metabolic process +GO:0006060,sorbitol metabolic process +GO:0006063,uronic acid metabolic process +GO:0006064,glucuronate catabolic process +GO:0006065,UDP-glucuronate biosynthetic process +GO:0006066,alcohol metabolic process +GO:0006067,ethanol metabolic process +GO:0006068,ethanol catabolic process +GO:0006069,ethanol oxidation +GO:0006071,glycerol metabolic process +GO:0006072,glycerol-3-phosphate metabolic process +GO:0006073,cellular glucan metabolic process +GO:0006081,cellular aldehyde metabolic process +GO:0006083,acetate metabolic process +GO:0006084,acetyl-CoA metabolic process +GO:0006085,acetyl-CoA biosynthetic process +GO:0006086,acetyl-CoA biosynthetic process from pyruvate +GO:0006089,lactate metabolic process +GO:0006090,pyruvate metabolic process +GO:0006091,generation of precursor metabolites and energy +GO:0006094,gluconeogenesis +GO:0006096,glycolytic process +GO:0006097,glyoxylate cycle +GO:0006098,pentose-phosphate shunt +GO:0006099,tricarboxylic acid cycle +GO:0006101,citrate metabolic process +GO:0006102,isocitrate metabolic process +GO:0006103,2-oxoglutarate metabolic process +GO:0006104,succinyl-CoA metabolic process +GO:0006105,succinate metabolic process +GO:0006106,fumarate metabolic process +GO:0006107,oxaloacetate metabolic process +GO:0006108,malate metabolic process +GO:0006109,regulation of carbohydrate metabolic process +GO:0006110,regulation of glycolytic process +GO:0006111,regulation of gluconeogenesis +GO:0006112,energy reserve metabolic process +GO:0006114,glycerol biosynthetic process +GO:0006116,NADH oxidation +GO:0006119,oxidative phosphorylation +GO:0006120,"mitochondrial electron transport, NADH to ubiquinone" +GO:0006121,"mitochondrial electron transport, succinate to ubiquinone" +GO:0006122,"mitochondrial electron transport, ubiquinol to cytochrome c" +GO:0006123,"mitochondrial electron transport, cytochrome c to oxygen" +GO:0006140,regulation of nucleotide metabolic process +GO:0006144,purine nucleobase metabolic process +GO:0006145,purine nucleobase catabolic process +GO:0006152,purine nucleoside catabolic process +GO:0006154,adenosine catabolic process +GO:0006163,purine nucleotide metabolic process +GO:0006164,purine nucleotide biosynthetic process +GO:0006165,nucleoside diphosphate phosphorylation +GO:0006166,purine ribonucleoside salvage +GO:0006167,AMP biosynthetic process +GO:0006168,adenine salvage +GO:0006171,cAMP biosynthetic process +GO:0006172,ADP biosynthetic process +GO:0006177,GMP biosynthetic process +GO:0006182,cGMP biosynthetic process +GO:0006183,GTP biosynthetic process +GO:0006188,IMP biosynthetic process +GO:0006189,'de novo' IMP biosynthetic process +GO:0006195,purine nucleotide catabolic process +GO:0006196,AMP catabolic process +GO:0006198,cAMP catabolic process +GO:0006203,dGTP catabolic process +GO:0006206,pyrimidine nucleobase metabolic process +GO:0006207,'de novo' pyrimidine nucleobase biosynthetic process +GO:0006208,pyrimidine nucleobase catabolic process +GO:0006210,thymine catabolic process +GO:0006212,uracil catabolic process +GO:0006213,pyrimidine nucleoside metabolic process +GO:0006216,cytidine catabolic process +GO:0006220,pyrimidine nucleotide metabolic process +GO:0006221,pyrimidine nucleotide biosynthetic process +GO:0006222,UMP biosynthetic process +GO:0006227,dUDP biosynthetic process +GO:0006228,UTP biosynthetic process +GO:0006231,dTMP biosynthetic process +GO:0006233,dTDP biosynthetic process +GO:0006235,dTTP biosynthetic process +GO:0006241,CTP biosynthetic process +GO:0006244,pyrimidine nucleotide catabolic process +GO:0006259,DNA metabolic process +GO:0006260,DNA replication +GO:0006261,DNA-dependent DNA replication +GO:0006264,mitochondrial DNA replication +GO:0006265,DNA topological change +GO:0006266,DNA ligation +GO:0006268,DNA unwinding involved in DNA replication +GO:0006269,"DNA replication, synthesis of RNA primer" +GO:0006270,DNA replication initiation +GO:0006271,DNA strand elongation involved in DNA replication +GO:0006272,leading strand elongation +GO:0006273,lagging strand elongation +GO:0006275,regulation of DNA replication +GO:0006278,RNA-dependent DNA replication +GO:0006281,DNA repair +GO:0006282,regulation of DNA repair +GO:0006283,transcription-coupled nucleotide-excision repair +GO:0006284,base-excision repair +GO:0006285,"base-excision repair, AP site formation" +GO:0006287,"base-excision repair, gap-filling" +GO:0006289,nucleotide-excision repair +GO:0006290,pyrimidine dimer repair +GO:0006295,"nucleotide-excision repair, DNA incision, 3'-to lesion" +GO:0006296,"nucleotide-excision repair, DNA incision, 5'-to lesion" +GO:0006297,"nucleotide-excision repair, DNA gap filling" +GO:0006298,mismatch repair +GO:0006301,postreplication repair +GO:0006302,double-strand break repair +GO:0006303,double-strand break repair via nonhomologous end joining +GO:0006304,DNA modification +GO:0006305,DNA alkylation +GO:0006306,DNA methylation +GO:0006307,DNA dealkylation involved in DNA repair +GO:0006308,DNA catabolic process +GO:0006309,apoptotic DNA fragmentation +GO:0006310,DNA recombination +GO:0006311,meiotic gene conversion +GO:0006312,mitotic recombination +GO:0006313,"transposition, DNA-mediated" +GO:0006323,DNA packaging +GO:0006325,chromatin organization +GO:0006333,chromatin assembly or disassembly +GO:0006334,nucleosome assembly +GO:0006335,DNA replication-dependent nucleosome assembly +GO:0006336,DNA replication-independent nucleosome assembly +GO:0006337,nucleosome disassembly +GO:0006338,chromatin remodeling +GO:0006342,chromatin silencing +GO:0006344,maintenance of chromatin silencing +GO:0006346,methylation-dependent chromatin silencing +GO:0006348,chromatin silencing at telomere +GO:0006349,regulation of gene expression by genetic imprinting +GO:0006352,"DNA-templated transcription, initiation" +GO:0006353,"DNA-templated transcription, termination" +GO:0006354,"DNA-templated transcription, elongation" +GO:0006356,regulation of transcription from RNA polymerase I promoter +GO:0006359,regulation of transcription from RNA polymerase III promoter +GO:0006360,transcription from RNA polymerase I promoter +GO:0006361,transcription initiation from RNA polymerase I promoter +GO:0006362,transcription elongation from RNA polymerase I promoter +GO:0006363,termination of RNA polymerase I transcription +GO:0006364,rRNA processing +GO:0006366,transcription from RNA polymerase II promoter +GO:0006367,transcription initiation from RNA polymerase II promoter +GO:0006368,transcription elongation from RNA polymerase II promoter +GO:0006369,termination of RNA polymerase II transcription +GO:0006370,7-methylguanosine mRNA capping +GO:0006376,mRNA splice site selection +GO:0006378,mRNA polyadenylation +GO:0006379,mRNA cleavage +GO:0006382,adenosine to inosine editing +GO:0006383,transcription from RNA polymerase III promoter +GO:0006384,transcription initiation from RNA polymerase III promoter +GO:0006385,transcription elongation from RNA polymerase III promoter +GO:0006386,termination of RNA polymerase III transcription +GO:0006388,"tRNA splicing, via endonucleolytic cleavage and ligation" +GO:0006390,transcription from mitochondrial promoter +GO:0006391,transcription initiation from mitochondrial promoter +GO:0006393,termination of mitochondrial transcription +GO:0006396,RNA processing +GO:0006397,mRNA processing +GO:0006398,mRNA 3'-end processing by stem-loop binding and cleavage +GO:0006399,tRNA metabolic process +GO:0006400,tRNA modification +GO:0006401,RNA catabolic process +GO:0006402,mRNA catabolic process +GO:0006403,RNA localization +GO:0006404,RNA import into nucleus +GO:0006405,RNA export from nucleus +GO:0006406,mRNA export from nucleus +GO:0006407,rRNA export from nucleus +GO:0006408,snRNA export from nucleus +GO:0006409,tRNA export from nucleus +GO:0006412,translation +GO:0006413,translational initiation +GO:0006414,translational elongation +GO:0006415,translational termination +GO:0006417,regulation of translation +GO:0006418,tRNA aminoacylation for protein translation +GO:0006419,alanyl-tRNA aminoacylation +GO:0006420,arginyl-tRNA aminoacylation +GO:0006421,asparaginyl-tRNA aminoacylation +GO:0006423,cysteinyl-tRNA aminoacylation +GO:0006424,glutamyl-tRNA aminoacylation +GO:0006426,glycyl-tRNA aminoacylation +GO:0006427,histidyl-tRNA aminoacylation +GO:0006428,isoleucyl-tRNA aminoacylation +GO:0006429,leucyl-tRNA aminoacylation +GO:0006431,methionyl-tRNA aminoacylation +GO:0006432,phenylalanyl-tRNA aminoacylation +GO:0006433,prolyl-tRNA aminoacylation +GO:0006434,seryl-tRNA aminoacylation +GO:0006435,threonyl-tRNA aminoacylation +GO:0006436,tryptophanyl-tRNA aminoacylation +GO:0006437,tyrosyl-tRNA aminoacylation +GO:0006438,valyl-tRNA aminoacylation +GO:0006446,regulation of translational initiation +GO:0006447,regulation of translational initiation by iron +GO:0006448,regulation of translational elongation +GO:0006449,regulation of translational termination +GO:0006450,regulation of translational fidelity +GO:0006451,translational readthrough +GO:0006452,translational frameshifting +GO:0006457,protein folding +GO:0006458,'de novo' protein folding +GO:0006465,signal peptide processing +GO:0006468,protein phosphorylation +GO:0006469,negative regulation of protein kinase activity +GO:0006470,protein dephosphorylation +GO:0006471,protein ADP-ribosylation +GO:0006473,protein acetylation +GO:0006474,N-terminal protein amino acid acetylation +GO:0006475,internal protein amino acid acetylation +GO:0006476,protein deacetylation +GO:0006477,protein sulfation +GO:0006478,peptidyl-tyrosine sulfation +GO:0006479,protein methylation +GO:0006480,N-terminal protein amino acid methylation +GO:0006481,C-terminal protein methylation +GO:0006482,protein demethylation +GO:0006486,protein glycosylation +GO:0006487,protein N-linked glycosylation +GO:0006488,dolichol-linked oligosaccharide biosynthetic process +GO:0006489,dolichyl diphosphate biosynthetic process +GO:0006490,oligosaccharide-lipid intermediate biosynthetic process +GO:0006491,N-glycan processing +GO:0006493,protein O-linked glycosylation +GO:0006497,protein lipidation +GO:0006498,N-terminal protein lipidation +GO:0006499,N-terminal protein myristoylation +GO:0006501,C-terminal protein lipidation +GO:0006505,GPI anchor metabolic process +GO:0006506,GPI anchor biosynthetic process +GO:0006509,membrane protein ectodomain proteolysis +GO:0006511,ubiquitin-dependent protein catabolic process +GO:0006513,protein monoubiquitination +GO:0006515,misfolded or incompletely synthesized protein catabolic process +GO:0006516,glycoprotein catabolic process +GO:0006517,protein deglycosylation +GO:0006518,peptide metabolic process +GO:0006520,cellular amino acid metabolic process +GO:0006521,regulation of cellular amino acid metabolic process +GO:0006522,alanine metabolic process +GO:0006524,alanine catabolic process +GO:0006525,arginine metabolic process +GO:0006526,arginine biosynthetic process +GO:0006527,arginine catabolic process +GO:0006528,asparagine metabolic process +GO:0006529,asparagine biosynthetic process +GO:0006531,aspartate metabolic process +GO:0006532,aspartate biosynthetic process +GO:0006533,aspartate catabolic process +GO:0006534,cysteine metabolic process +GO:0006536,glutamate metabolic process +GO:0006537,glutamate biosynthetic process +GO:0006538,glutamate catabolic process +GO:0006540,glutamate decarboxylation to succinate +GO:0006541,glutamine metabolic process +GO:0006542,glutamine biosynthetic process +GO:0006543,glutamine catabolic process +GO:0006544,glycine metabolic process +GO:0006545,glycine biosynthetic process +GO:0006546,glycine catabolic process +GO:0006547,histidine metabolic process +GO:0006548,histidine catabolic process +GO:0006549,isoleucine metabolic process +GO:0006551,leucine metabolic process +GO:0006552,leucine catabolic process +GO:0006553,lysine metabolic process +GO:0006554,lysine catabolic process +GO:0006555,methionine metabolic process +GO:0006556,S-adenosylmethionine biosynthetic process +GO:0006558,L-phenylalanine metabolic process +GO:0006559,L-phenylalanine catabolic process +GO:0006560,proline metabolic process +GO:0006561,proline biosynthetic process +GO:0006562,proline catabolic process +GO:0006563,L-serine metabolic process +GO:0006564,L-serine biosynthetic process +GO:0006565,L-serine catabolic process +GO:0006566,threonine metabolic process +GO:0006568,tryptophan metabolic process +GO:0006569,tryptophan catabolic process +GO:0006570,tyrosine metabolic process +GO:0006572,tyrosine catabolic process +GO:0006573,valine metabolic process +GO:0006574,valine catabolic process +GO:0006575,cellular modified amino acid metabolic process +GO:0006576,cellular biogenic amine metabolic process +GO:0006577,amino-acid betaine metabolic process +GO:0006578,amino-acid betaine biosynthetic process +GO:0006579,amino-acid betaine catabolic process +GO:0006581,acetylcholine catabolic process +GO:0006582,melanin metabolic process +GO:0006583,melanin biosynthetic process from tyrosine +GO:0006584,catecholamine metabolic process +GO:0006586,indolalkylamine metabolic process +GO:0006590,thyroid hormone generation +GO:0006591,ornithine metabolic process +GO:0006595,polyamine metabolic process +GO:0006596,polyamine biosynthetic process +GO:0006597,spermine biosynthetic process +GO:0006598,polyamine catabolic process +GO:0006600,creatine metabolic process +GO:0006601,creatine biosynthetic process +GO:0006605,protein targeting +GO:0006606,protein import into nucleus +GO:0006607,NLS-bearing protein import into nucleus +GO:0006610,ribosomal protein import into nucleus +GO:0006611,protein export from nucleus +GO:0006612,protein targeting to membrane +GO:0006613,cotranslational protein targeting to membrane +GO:0006614,SRP-dependent cotranslational protein targeting to membrane +GO:0006616,"SRP-dependent cotranslational protein targeting to membrane, translocation" +GO:0006620,posttranslational protein targeting to membrane +GO:0006621,protein retention in ER lumen +GO:0006622,protein targeting to lysosome +GO:0006623,protein targeting to vacuole +GO:0006624,vacuolar protein processing +GO:0006625,protein targeting to peroxisome +GO:0006626,protein targeting to mitochondrion +GO:0006627,protein processing involved in protein targeting to mitochondrion +GO:0006631,fatty acid metabolic process +GO:0006633,fatty acid biosynthetic process +GO:0006635,fatty acid beta-oxidation +GO:0006636,unsaturated fatty acid biosynthetic process +GO:0006637,acyl-CoA metabolic process +GO:0006638,neutral lipid metabolic process +GO:0006639,acylglycerol metabolic process +GO:0006641,triglyceride metabolic process +GO:0006642,triglyceride mobilization +GO:0006643,membrane lipid metabolic process +GO:0006644,phospholipid metabolic process +GO:0006646,phosphatidylethanolamine biosynthetic process +GO:0006649,phospholipid transfer to membrane +GO:0006650,glycerophospholipid metabolic process +GO:0006651,diacylglycerol biosynthetic process +GO:0006654,phosphatidic acid biosynthetic process +GO:0006655,phosphatidylglycerol biosynthetic process +GO:0006656,phosphatidylcholine biosynthetic process +GO:0006657,CDP-choline pathway +GO:0006658,phosphatidylserine metabolic process +GO:0006659,phosphatidylserine biosynthetic process +GO:0006661,phosphatidylinositol biosynthetic process +GO:0006662,glycerol ether metabolic process +GO:0006663,platelet activating factor biosynthetic process +GO:0006664,glycolipid metabolic process +GO:0006665,sphingolipid metabolic process +GO:0006667,sphinganine metabolic process +GO:0006668,sphinganine-1-phosphate metabolic process +GO:0006670,sphingosine metabolic process +GO:0006672,ceramide metabolic process +GO:0006677,glycosylceramide metabolic process +GO:0006678,glucosylceramide metabolic process +GO:0006680,glucosylceramide catabolic process +GO:0006681,galactosylceramide metabolic process +GO:0006682,galactosylceramide biosynthetic process +GO:0006684,sphingomyelin metabolic process +GO:0006685,sphingomyelin catabolic process +GO:0006686,sphingomyelin biosynthetic process +GO:0006687,glycosphingolipid metabolic process +GO:0006688,glycosphingolipid biosynthetic process +GO:0006689,ganglioside catabolic process +GO:0006690,icosanoid metabolic process +GO:0006691,leukotriene metabolic process +GO:0006692,prostanoid metabolic process +GO:0006693,prostaglandin metabolic process +GO:0006694,steroid biosynthetic process +GO:0006695,cholesterol biosynthetic process +GO:0006699,bile acid biosynthetic process +GO:0006700,C21-steroid hormone biosynthetic process +GO:0006701,progesterone biosynthetic process +GO:0006702,androgen biosynthetic process +GO:0006703,estrogen biosynthetic process +GO:0006704,glucocorticoid biosynthetic process +GO:0006705,mineralocorticoid biosynthetic process +GO:0006706,steroid catabolic process +GO:0006707,cholesterol catabolic process +GO:0006710,androgen catabolic process +GO:0006714,sesquiterpenoid metabolic process +GO:0006720,isoprenoid metabolic process +GO:0006721,terpenoid metabolic process +GO:0006722,triterpenoid metabolic process +GO:0006726,eye pigment biosynthetic process +GO:0006729,tetrahydrobiopterin biosynthetic process +GO:0006730,one-carbon metabolic process +GO:0006732,coenzyme metabolic process +GO:0006733,oxidoreduction coenzyme metabolic process +GO:0006734,NADH metabolic process +GO:0006735,NADH regeneration +GO:0006739,NADP metabolic process +GO:0006740,NADPH regeneration +GO:0006741,NADP biosynthetic process +GO:0006742,NADP catabolic process +GO:0006743,ubiquinone metabolic process +GO:0006744,ubiquinone biosynthetic process +GO:0006749,glutathione metabolic process +GO:0006750,glutathione biosynthetic process +GO:0006753,nucleoside phosphate metabolic process +GO:0006754,ATP biosynthetic process +GO:0006757,ATP generation from ADP +GO:0006760,folic acid-containing compound metabolic process +GO:0006766,vitamin metabolic process +GO:0006767,water-soluble vitamin metabolic process +GO:0006768,biotin metabolic process +GO:0006769,nicotinamide metabolic process +GO:0006771,riboflavin metabolic process +GO:0006772,thiamine metabolic process +GO:0006775,fat-soluble vitamin metabolic process +GO:0006776,vitamin A metabolic process +GO:0006777,Mo-molybdopterin cofactor biosynthetic process +GO:0006778,porphyrin-containing compound metabolic process +GO:0006779,porphyrin-containing compound biosynthetic process +GO:0006780,uroporphyrinogen III biosynthetic process +GO:0006782,protoporphyrinogen IX biosynthetic process +GO:0006783,heme biosynthetic process +GO:0006784,heme a biosynthetic process +GO:0006787,porphyrin-containing compound catabolic process +GO:0006788,heme oxidation +GO:0006790,sulfur compound metabolic process +GO:0006797,polyphosphate metabolic process +GO:0006798,polyphosphate catabolic process +GO:0006801,superoxide metabolic process +GO:0006805,xenobiotic metabolic process +GO:0006808,regulation of nitrogen utilization +GO:0006809,nitric oxide biosynthetic process +GO:0006812,cation transport +GO:0006813,potassium ion transport +GO:0006814,sodium ion transport +GO:0006816,calcium ion transport +GO:0006817,phosphate ion transport +GO:0006818,hydrogen transport +GO:0006820,anion transport +GO:0006821,chloride transport +GO:0006824,cobalt ion transport +GO:0006825,copper ion transport +GO:0006826,iron ion transport +GO:0006828,manganese ion transport +GO:0006829,zinc II ion transport +GO:0006833,water transport +GO:0006835,dicarboxylic acid transport +GO:0006836,neurotransmitter transport +GO:0006837,serotonin transport +GO:0006839,mitochondrial transport +GO:0006842,tricarboxylic acid transport +GO:0006848,pyruvate transport +GO:0006850,mitochondrial pyruvate transport +GO:0006851,mitochondrial calcium ion transport +GO:0006853,carnitine shuttle +GO:0006855,drug transmembrane transport +GO:0006857,oligopeptide transport +GO:0006862,nucleotide transport +GO:0006863,purine nucleobase transport +GO:0006864,pyrimidine nucleotide transport +GO:0006865,amino acid transport +GO:0006867,asparagine transport +GO:0006868,glutamine transport +GO:0006869,lipid transport +GO:0006873,cellular ion homeostasis +GO:0006874,cellular calcium ion homeostasis +GO:0006875,cellular metal ion homeostasis +GO:0006878,cellular copper ion homeostasis +GO:0006879,cellular iron ion homeostasis +GO:0006880,intracellular sequestering of iron ion +GO:0006882,cellular zinc ion homeostasis +GO:0006883,cellular sodium ion homeostasis +GO:0006884,cell volume homeostasis +GO:0006885,regulation of pH +GO:0006886,intracellular protein transport +GO:0006887,exocytosis +GO:0006888,ER to Golgi vesicle-mediated transport +GO:0006890,"retrograde vesicle-mediated transport, Golgi to ER" +GO:0006891,intra-Golgi vesicle-mediated transport +GO:0006892,post-Golgi vesicle-mediated transport +GO:0006893,Golgi to plasma membrane transport +GO:0006895,Golgi to endosome transport +GO:0006896,Golgi to vacuole transport +GO:0006897,endocytosis +GO:0006898,receptor-mediated endocytosis +GO:0006900,membrane budding +GO:0006901,vesicle coating +GO:0006903,vesicle targeting +GO:0006904,vesicle docking involved in exocytosis +GO:0006906,vesicle fusion +GO:0006907,pinocytosis +GO:0006909,phagocytosis +GO:0006910,"phagocytosis, recognition" +GO:0006911,"phagocytosis, engulfment" +GO:0006913,nucleocytoplasmic transport +GO:0006914,autophagy +GO:0006919,activation of cysteine-type endopeptidase activity involved in apoptotic process +GO:0006921,cellular component disassembly involved in execution phase of apoptosis +GO:0006924,activation-induced cell death of T cells +GO:0006925,inflammatory cell apoptotic process +GO:0006927,transformed cell apoptotic process +GO:0006929,substrate-dependent cell migration +GO:0006930,"substrate-dependent cell migration, cell extension" +GO:0006931,"substrate-dependent cell migration, cell attachment to substrate" +GO:0006933,negative regulation of cell adhesion involved in substrate-bound cell migration +GO:0006935,chemotaxis +GO:0006936,muscle contraction +GO:0006937,regulation of muscle contraction +GO:0006939,smooth muscle contraction +GO:0006940,regulation of smooth muscle contraction +GO:0006941,striated muscle contraction +GO:0006942,regulation of striated muscle contraction +GO:0006949,syncytium formation +GO:0006953,acute-phase response +GO:0006954,inflammatory response +GO:0006956,complement activation +GO:0006957,"complement activation, alternative pathway" +GO:0006958,"complement activation, classical pathway" +GO:0006959,humoral immune response +GO:0006963,positive regulation of antibacterial peptide biosynthetic process +GO:0006965,positive regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria +GO:0006968,cellular defense response +GO:0006970,response to osmotic stress +GO:0006971,hypotonic response +GO:0006972,hyperosmotic response +GO:0006974,cellular response to DNA damage stimulus +GO:0006975,DNA damage induced protein phosphorylation +GO:0006977,"DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" +GO:0006978,"DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator" +GO:0006979,response to oxidative stress +GO:0006982,response to lipid hydroperoxide +GO:0006983,ER overload response +GO:0006984,ER-nucleus signaling pathway +GO:0006986,response to unfolded protein +GO:0006987,activation of signaling protein activity involved in unfolded protein response +GO:0006990,positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response +GO:0006991,response to sterol depletion +GO:0006995,cellular response to nitrogen starvation +GO:0006997,nucleus organization +GO:0006998,nuclear envelope organization +GO:0006999,nuclear pore organization +GO:0007000,nucleolus organization +GO:0007004,telomere maintenance via telomerase +GO:0007005,mitochondrion organization +GO:0007006,mitochondrial membrane organization +GO:0007007,inner mitochondrial membrane organization +GO:0007008,outer mitochondrial membrane organization +GO:0007009,plasma membrane organization +GO:0007010,cytoskeleton organization +GO:0007015,actin filament organization +GO:0007016,cytoskeletal anchoring at plasma membrane +GO:0007017,microtubule-based process +GO:0007018,microtubule-based movement +GO:0007019,microtubule depolymerization +GO:0007020,microtubule nucleation +GO:0007021,tubulin complex assembly +GO:0007023,post-chaperonin tubulin folding pathway +GO:0007026,negative regulation of microtubule depolymerization +GO:0007028,cytoplasm organization +GO:0007029,endoplasmic reticulum organization +GO:0007030,Golgi organization +GO:0007031,peroxisome organization +GO:0007032,endosome organization +GO:0007033,vacuole organization +GO:0007034,vacuolar transport +GO:0007035,vacuolar acidification +GO:0007040,lysosome organization +GO:0007041,lysosomal transport +GO:0007042,lysosomal lumen acidification +GO:0007043,cell-cell junction assembly +GO:0007044,cell-substrate junction assembly +GO:0007045,cell-substrate adherens junction assembly +GO:0007050,cell cycle arrest +GO:0007051,spindle organization +GO:0007052,mitotic spindle organization +GO:0007056,spindle assembly involved in female meiosis +GO:0007057,spindle assembly involved in female meiosis I +GO:0007059,chromosome segregation +GO:0007060,male meiosis chromosome segregation +GO:0007062,sister chromatid cohesion +GO:0007063,regulation of sister chromatid cohesion +GO:0007064,mitotic sister chromatid cohesion +GO:0007066,female meiosis sister chromatid cohesion +GO:0007067,mitotic nuclear division +GO:0007068,negative regulation of transcription during mitosis +GO:0007070,negative regulation of transcription from RNA polymerase II promoter during mitosis +GO:0007076,mitotic chromosome condensation +GO:0007077,mitotic nuclear envelope disassembly +GO:0007079,mitotic chromosome movement towards spindle pole +GO:0007080,mitotic metaphase plate congression +GO:0007084,mitotic nuclear envelope reassembly +GO:0007088,regulation of mitotic nuclear division +GO:0007089,traversing start control point of mitotic cell cycle +GO:0007091,metaphase/anaphase transition of mitotic cell cycle +GO:0007092,activation of APC-Cdc20 complex activity +GO:0007093,mitotic cell cycle checkpoint +GO:0007094,mitotic spindle assembly checkpoint +GO:0007095,mitotic G2 DNA damage checkpoint +GO:0007096,regulation of exit from mitosis +GO:0007097,nuclear migration +GO:0007098,centrosome cycle +GO:0007099,centriole replication +GO:0007100,mitotic centrosome separation +GO:0007113,endomitotic cell cycle +GO:0007126,meiotic nuclear division +GO:0007127,meiosis I +GO:0007129,synapsis +GO:0007130,synaptonemal complex assembly +GO:0007131,reciprocal meiotic recombination +GO:0007135,meiosis II +GO:0007140,male meiosis +GO:0007141,male meiosis I +GO:0007143,female meiotic division +GO:0007144,female meiosis I +GO:0007147,female meiosis II +GO:0007156,homophilic cell adhesion via plasma membrane adhesion molecules +GO:0007157,heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules +GO:0007158,neuron cell-cell adhesion +GO:0007159,leukocyte cell-cell adhesion +GO:0007160,cell-matrix adhesion +GO:0007161,calcium-independent cell-matrix adhesion +GO:0007162,negative regulation of cell adhesion +GO:0007163,establishment or maintenance of cell polarity +GO:0007164,establishment of tissue polarity +GO:0007168,receptor guanylyl cyclase signaling pathway +GO:0007169,transmembrane receptor protein tyrosine kinase signaling pathway +GO:0007171,activation of transmembrane receptor protein tyrosine kinase activity +GO:0007172,signal complex assembly +GO:0007173,epidermal growth factor receptor signaling pathway +GO:0007175,negative regulation of epidermal growth factor-activated receptor activity +GO:0007176,regulation of epidermal growth factor-activated receptor activity +GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway +GO:0007179,transforming growth factor beta receptor signaling pathway +GO:0007181,transforming growth factor beta receptor complex assembly +GO:0007182,common-partner SMAD protein phosphorylation +GO:0007183,SMAD protein complex assembly +GO:0007184,SMAD protein import into nucleus +GO:0007185,transmembrane receptor protein tyrosine phosphatase signaling pathway +GO:0007187,"G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger" +GO:0007188,adenylate cyclase-modulating G-protein coupled receptor signaling pathway +GO:0007189,adenylate cyclase-activating G-protein coupled receptor signaling pathway +GO:0007190,activation of adenylate cyclase activity +GO:0007191,adenylate cyclase-activating dopamine receptor signaling pathway +GO:0007193,adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway +GO:0007194,negative regulation of adenylate cyclase activity +GO:0007195,adenylate cyclase-inhibiting dopamine receptor signaling pathway +GO:0007196,adenylate cyclase-inhibiting G-protein coupled glutamate receptor signaling pathway +GO:0007197,adenylate cyclase-inhibiting G-protein coupled acetylcholine receptor signaling pathway +GO:0007198,adenylate cyclase-inhibiting serotonin receptor signaling pathway +GO:0007199,G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger +GO:0007200,phospholipase C-activating G-protein coupled receptor signaling pathway +GO:0007202,activation of phospholipase C activity +GO:0007204,positive regulation of cytosolic calcium ion concentration +GO:0007205,protein kinase C-activating G-protein coupled receptor signaling pathway +GO:0007206,phospholipase C-activating G-protein coupled glutamate receptor signaling pathway +GO:0007207,phospholipase C-activating G-protein coupled acetylcholine receptor signaling pathway +GO:0007208,phospholipase C-activating serotonin receptor signaling pathway +GO:0007210,serotonin receptor signaling pathway +GO:0007212,dopamine receptor signaling pathway +GO:0007213,G-protein coupled acetylcholine receptor signaling pathway +GO:0007214,gamma-aminobutyric acid signaling pathway +GO:0007215,glutamate receptor signaling pathway +GO:0007216,G-protein coupled glutamate receptor signaling pathway +GO:0007217,tachykinin receptor signaling pathway +GO:0007218,neuropeptide signaling pathway +GO:0007219,Notch signaling pathway +GO:0007220,Notch receptor processing +GO:0007221,positive regulation of transcription of Notch receptor target +GO:0007223,"Wnt signaling pathway, calcium modulating pathway" +GO:0007224,smoothened signaling pathway +GO:0007227,signal transduction downstream of smoothened +GO:0007228,positive regulation of hh target transcription factor activity +GO:0007229,integrin-mediated signaling pathway +GO:0007249,I-kappaB kinase/NF-kappaB signaling +GO:0007250,activation of NF-kappaB-inducing kinase activity +GO:0007252,I-kappaB phosphorylation +GO:0007253,cytoplasmic sequestering of NF-kappaB +GO:0007254,JNK cascade +GO:0007256,activation of JNKK activity +GO:0007257,activation of JUN kinase activity +GO:0007258,JUN phosphorylation +GO:0007259,JAK-STAT cascade +GO:0007260,tyrosine phosphorylation of STAT protein +GO:0007262,STAT protein import into nucleus +GO:0007263,nitric oxide mediated signal transduction +GO:0007264,small GTPase mediated signal transduction +GO:0007265,Ras protein signal transduction +GO:0007266,Rho protein signal transduction +GO:0007267,cell-cell signaling +GO:0007268,synaptic transmission +GO:0007269,neurotransmitter secretion +GO:0007270,neuron-neuron synaptic transmission +GO:0007271,"synaptic transmission, cholinergic" +GO:0007272,ensheathment of neurons +GO:0007274,neuromuscular synaptic transmission +GO:0007276,gamete generation +GO:0007281,germ cell development +GO:0007283,spermatogenesis +GO:0007286,spermatid development +GO:0007288,sperm axoneme assembly +GO:0007289,spermatid nucleus differentiation +GO:0007290,spermatid nucleus elongation +GO:0007292,female gamete generation +GO:0007296,vitellogenesis +GO:0007308,oocyte construction +GO:0007309,oocyte axis specification +GO:0007314,oocyte anterior/posterior axis specification +GO:0007315,pole plasm assembly +GO:0007320,insemination +GO:0007338,single fertilization +GO:0007339,binding of sperm to zona pellucida +GO:0007340,acrosome reaction +GO:0007341,penetration of zona pellucida +GO:0007342,fusion of sperm to egg plasma membrane +GO:0007343,egg activation +GO:0007346,regulation of mitotic cell cycle +GO:0007350,blastoderm segmentation +GO:0007351,tripartite regional subdivision +GO:0007352,zygotic specification of dorsal/ventral axis +GO:0007354,"zygotic determination of anterior/posterior axis, embryo" +GO:0007356,thorax and anterior abdomen determination +GO:0007368,determination of left/right symmetry +GO:0007369,gastrulation +GO:0007379,segment specification +GO:0007386,compartment pattern specification +GO:0007389,pattern specification process +GO:0007398,ectoderm development +GO:0007402,ganglion mother cell fate determination +GO:0007403,glial cell fate determination +GO:0007405,neuroblast proliferation +GO:0007406,negative regulation of neuroblast proliferation +GO:0007409,axonogenesis +GO:0007411,axon guidance +GO:0007412,axon target recognition +GO:0007413,axonal fasciculation +GO:0007416,synapse assembly +GO:0007417,central nervous system development +GO:0007418,ventral midline development +GO:0007420,brain development +GO:0007422,peripheral nervous system development +GO:0007423,sensory organ development +GO:0007431,salivary gland development +GO:0007435,salivary gland morphogenesis +GO:0007439,ectodermal digestive tract development +GO:0007440,foregut morphogenesis +GO:0007442,hindgut morphogenesis +GO:0007468,regulation of rhodopsin gene expression +GO:0007492,endoderm development +GO:0007493,endodermal cell fate determination +GO:0007494,midgut development +GO:0007497,posterior midgut development +GO:0007498,mesoderm development +GO:0007500,mesodermal cell fate determination +GO:0007501,mesodermal cell fate specification +GO:0007506,gonadal mesoderm development +GO:0007507,heart development +GO:0007509,mesoderm migration involved in gastrulation +GO:0007512,adult heart development +GO:0007517,muscle organ development +GO:0007518,myoblast fate determination +GO:0007519,skeletal muscle tissue development +GO:0007520,myoblast fusion +GO:0007521,muscle cell fate determination +GO:0007525,somatic muscle development +GO:0007528,neuromuscular junction development +GO:0007529,establishment of synaptic specificity at neuromuscular junction +GO:0007530,sex determination +GO:0007538,primary sex determination +GO:0007542,"primary sex determination, germ-line" +GO:0007548,sex differentiation +GO:0007549,dosage compensation +GO:0007565,female pregnancy +GO:0007566,embryo implantation +GO:0007567,parturition +GO:0007568,aging +GO:0007569,cell aging +GO:0007571,age-dependent general metabolic decline +GO:0007584,response to nutrient +GO:0007585,respiratory gaseous exchange +GO:0007586,digestion +GO:0007588,excretion +GO:0007589,body fluid secretion +GO:0007595,lactation +GO:0007596,blood coagulation +GO:0007597,"blood coagulation, intrinsic pathway" +GO:0007598,"blood coagulation, extrinsic pathway" +GO:0007599,hemostasis +GO:0007600,sensory perception +GO:0007601,visual perception +GO:0007602,phototransduction +GO:0007603,"phototransduction, visible light" +GO:0007605,sensory perception of sound +GO:0007606,sensory perception of chemical stimulus +GO:0007608,sensory perception of smell +GO:0007610,behavior +GO:0007611,learning or memory +GO:0007612,learning +GO:0007613,memory +GO:0007614,short-term memory +GO:0007616,long-term memory +GO:0007617,mating behavior +GO:0007618,mating +GO:0007619,courtship behavior +GO:0007620,copulation +GO:0007621,negative regulation of female receptivity +GO:0007622,rhythmic behavior +GO:0007623,circadian rhythm +GO:0007625,grooming behavior +GO:0007626,locomotory behavior +GO:0007628,adult walking behavior +GO:0007631,feeding behavior +GO:0007632,visual behavior +GO:0007635,chemosensory behavior +GO:0007638,mechanosensory behavior +GO:0008015,blood circulation +GO:0008016,regulation of heart contraction +GO:0008033,tRNA processing +GO:0008037,cell recognition +GO:0008038,neuron recognition +GO:0008045,motor neuron axon guidance +GO:0008050,female courtship behavior +GO:0008053,mitochondrial fusion +GO:0008054,negative regulation of cyclin-dependent protein serine/threonine kinase by cyclin degradation +GO:0008063,Toll signaling pathway +GO:0008064,regulation of actin polymerization or depolymerization +GO:0008065,establishment of blood-nerve barrier +GO:0008078,mesodermal cell migration +GO:0008088,axo-dendritic transport +GO:0008089,anterograde axonal transport +GO:0008090,retrograde axonal transport +GO:0008105,asymmetric protein localization +GO:0008154,actin polymerization or depolymerization +GO:0008156,negative regulation of DNA replication +GO:0008202,steroid metabolic process +GO:0008203,cholesterol metabolic process +GO:0008206,bile acid metabolic process +GO:0008207,C21-steroid hormone metabolic process +GO:0008209,androgen metabolic process +GO:0008210,estrogen metabolic process +GO:0008211,glucocorticoid metabolic process +GO:0008212,mineralocorticoid metabolic process +GO:0008213,protein alkylation +GO:0008214,protein dealkylation +GO:0008215,spermine metabolic process +GO:0008216,spermidine metabolic process +GO:0008217,regulation of blood pressure +GO:0008218,bioluminescence +GO:0008228,opsonization +GO:0008272,sulfate transport +GO:0008277,regulation of G-protein coupled receptor protein signaling pathway +GO:0008283,cell proliferation +GO:0008284,positive regulation of cell proliferation +GO:0008285,negative regulation of cell proliferation +GO:0008286,insulin receptor signaling pathway +GO:0008291,acetylcholine metabolic process +GO:0008292,acetylcholine biosynthetic process +GO:0008295,spermidine biosynthetic process +GO:0008298,intracellular mRNA localization +GO:0008299,isoprenoid biosynthetic process +GO:0008300,isoprenoid catabolic process +GO:0008306,associative learning +GO:0008333,endosome to lysosome transport +GO:0008334,histone mRNA metabolic process +GO:0008340,determination of adult lifespan +GO:0008343,adult feeding behavior +GO:0008344,adult locomotory behavior +GO:0008347,glial cell migration +GO:0008354,germ cell migration +GO:0008355,olfactory learning +GO:0008356,asymmetric cell division +GO:0008358,"maternal determination of anterior/posterior axis, embryo" +GO:0008360,regulation of cell shape +GO:0008361,regulation of cell size +GO:0008366,axon ensheathment +GO:0008380,RNA splicing +GO:0008406,gonad development +GO:0008535,respiratory chain complex IV assembly +GO:0008542,visual learning +GO:0008543,fibroblast growth factor receptor signaling pathway +GO:0008544,epidermis development +GO:0008582,regulation of synaptic growth at neuromuscular junction +GO:0008584,male gonad development +GO:0008585,female gonad development +GO:0008588,release of cytoplasmic sequestered NF-kappaB +GO:0008589,regulation of smoothened signaling pathway +GO:0008593,regulation of Notch signaling pathway +GO:0008594,photoreceptor cell morphogenesis +GO:0008595,"anterior/posterior axis specification, embryo" +GO:0008608,attachment of spindle microtubules to kinetochore +GO:0008610,lipid biosynthetic process +GO:0008611,ether lipid biosynthetic process +GO:0008612,peptidyl-lysine modification to peptidyl-hypusine +GO:0008614,pyridoxine metabolic process +GO:0008615,pyridoxine biosynthetic process +GO:0008616,queuosine biosynthetic process +GO:0008625,extrinsic apoptotic signaling pathway via death domain receptors +GO:0008626,granzyme-mediated apoptotic signaling pathway +GO:0008628,hormone-mediated apoptotic signaling pathway +GO:0008630,intrinsic apoptotic signaling pathway in response to DNA damage +GO:0008631,intrinsic apoptotic signaling pathway in response to oxidative stress +GO:0008635,activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c +GO:0008637,apoptotic mitochondrial changes +GO:0008643,carbohydrate transport +GO:0008645,hexose transport +GO:0008652,cellular amino acid biosynthetic process +GO:0008653,lipopolysaccharide metabolic process +GO:0008654,phospholipid biosynthetic process +GO:0008655,pyrimidine-containing compound salvage +GO:0009048,dosage compensation by inactivation of X chromosome +GO:0009051,"pentose-phosphate shunt, oxidative branch" +GO:0009052,"pentose-phosphate shunt, non-oxidative branch" +GO:0009057,macromolecule catabolic process +GO:0009060,aerobic respiration +GO:0009062,fatty acid catabolic process +GO:0009063,cellular amino acid catabolic process +GO:0009064,glutamine family amino acid metabolic process +GO:0009065,glutamine family amino acid catabolic process +GO:0009066,aspartate family amino acid metabolic process +GO:0009067,aspartate family amino acid biosynthetic process +GO:0009068,aspartate family amino acid catabolic process +GO:0009069,serine family amino acid metabolic process +GO:0009070,serine family amino acid biosynthetic process +GO:0009071,serine family amino acid catabolic process +GO:0009072,aromatic amino acid family metabolic process +GO:0009074,aromatic amino acid family catabolic process +GO:0009078,pyruvate family amino acid metabolic process +GO:0009080,pyruvate family amino acid catabolic process +GO:0009081,branched-chain amino acid metabolic process +GO:0009082,branched-chain amino acid biosynthetic process +GO:0009083,branched-chain amino acid catabolic process +GO:0009084,glutamine family amino acid biosynthetic process +GO:0009086,methionine biosynthetic process +GO:0009092,homoserine metabolic process +GO:0009093,cysteine catabolic process +GO:0009100,glycoprotein metabolic process +GO:0009101,glycoprotein biosynthetic process +GO:0009103,lipopolysaccharide biosynthetic process +GO:0009106,lipoate metabolic process +GO:0009107,lipoate biosynthetic process +GO:0009108,coenzyme biosynthetic process +GO:0009109,coenzyme catabolic process +GO:0009110,vitamin biosynthetic process +GO:0009111,vitamin catabolic process +GO:0009112,nucleobase metabolic process +GO:0009113,purine nucleobase biosynthetic process +GO:0009115,xanthine catabolic process +GO:0009116,nucleoside metabolic process +GO:0009117,nucleotide metabolic process +GO:0009118,regulation of nucleoside metabolic process +GO:0009119,ribonucleoside metabolic process +GO:0009120,deoxyribonucleoside metabolic process +GO:0009123,nucleoside monophosphate metabolic process +GO:0009124,nucleoside monophosphate biosynthetic process +GO:0009125,nucleoside monophosphate catabolic process +GO:0009126,purine nucleoside monophosphate metabolic process +GO:0009127,purine nucleoside monophosphate biosynthetic process +GO:0009128,purine nucleoside monophosphate catabolic process +GO:0009129,pyrimidine nucleoside monophosphate metabolic process +GO:0009130,pyrimidine nucleoside monophosphate biosynthetic process +GO:0009132,nucleoside diphosphate metabolic process +GO:0009133,nucleoside diphosphate biosynthetic process +GO:0009134,nucleoside diphosphate catabolic process +GO:0009135,purine nucleoside diphosphate metabolic process +GO:0009136,purine nucleoside diphosphate biosynthetic process +GO:0009137,purine nucleoside diphosphate catabolic process +GO:0009138,pyrimidine nucleoside diphosphate metabolic process +GO:0009139,pyrimidine nucleoside diphosphate biosynthetic process +GO:0009141,nucleoside triphosphate metabolic process +GO:0009142,nucleoside triphosphate biosynthetic process +GO:0009143,nucleoside triphosphate catabolic process +GO:0009144,purine nucleoside triphosphate metabolic process +GO:0009145,purine nucleoside triphosphate biosynthetic process +GO:0009146,purine nucleoside triphosphate catabolic process +GO:0009147,pyrimidine nucleoside triphosphate metabolic process +GO:0009148,pyrimidine nucleoside triphosphate biosynthetic process +GO:0009150,purine ribonucleotide metabolic process +GO:0009151,purine deoxyribonucleotide metabolic process +GO:0009152,purine ribonucleotide biosynthetic process +GO:0009153,purine deoxyribonucleotide biosynthetic process +GO:0009154,purine ribonucleotide catabolic process +GO:0009155,purine deoxyribonucleotide catabolic process +GO:0009156,ribonucleoside monophosphate biosynthetic process +GO:0009157,deoxyribonucleoside monophosphate biosynthetic process +GO:0009158,ribonucleoside monophosphate catabolic process +GO:0009159,deoxyribonucleoside monophosphate catabolic process +GO:0009161,ribonucleoside monophosphate metabolic process +GO:0009162,deoxyribonucleoside monophosphate metabolic process +GO:0009163,nucleoside biosynthetic process +GO:0009164,nucleoside catabolic process +GO:0009165,nucleotide biosynthetic process +GO:0009166,nucleotide catabolic process +GO:0009167,purine ribonucleoside monophosphate metabolic process +GO:0009168,purine ribonucleoside monophosphate biosynthetic process +GO:0009169,purine ribonucleoside monophosphate catabolic process +GO:0009173,pyrimidine ribonucleoside monophosphate metabolic process +GO:0009174,pyrimidine ribonucleoside monophosphate biosynthetic process +GO:0009176,pyrimidine deoxyribonucleoside monophosphate metabolic process +GO:0009177,pyrimidine deoxyribonucleoside monophosphate biosynthetic process +GO:0009179,purine ribonucleoside diphosphate metabolic process +GO:0009180,purine ribonucleoside diphosphate biosynthetic process +GO:0009181,purine ribonucleoside diphosphate catabolic process +GO:0009182,purine deoxyribonucleoside diphosphate metabolic process +GO:0009183,purine deoxyribonucleoside diphosphate biosynthetic process +GO:0009185,ribonucleoside diphosphate metabolic process +GO:0009186,deoxyribonucleoside diphosphate metabolic process +GO:0009187,cyclic nucleotide metabolic process +GO:0009188,ribonucleoside diphosphate biosynthetic process +GO:0009189,deoxyribonucleoside diphosphate biosynthetic process +GO:0009190,cyclic nucleotide biosynthetic process +GO:0009191,ribonucleoside diphosphate catabolic process +GO:0009196,pyrimidine deoxyribonucleoside diphosphate metabolic process +GO:0009197,pyrimidine deoxyribonucleoside diphosphate biosynthetic process +GO:0009199,ribonucleoside triphosphate metabolic process +GO:0009200,deoxyribonucleoside triphosphate metabolic process +GO:0009201,ribonucleoside triphosphate biosynthetic process +GO:0009202,deoxyribonucleoside triphosphate biosynthetic process +GO:0009204,deoxyribonucleoside triphosphate catabolic process +GO:0009205,purine ribonucleoside triphosphate metabolic process +GO:0009206,purine ribonucleoside triphosphate biosynthetic process +GO:0009208,pyrimidine ribonucleoside triphosphate metabolic process +GO:0009209,pyrimidine ribonucleoside triphosphate biosynthetic process +GO:0009211,pyrimidine deoxyribonucleoside triphosphate metabolic process +GO:0009212,pyrimidine deoxyribonucleoside triphosphate biosynthetic process +GO:0009214,cyclic nucleotide catabolic process +GO:0009215,purine deoxyribonucleoside triphosphate metabolic process +GO:0009216,purine deoxyribonucleoside triphosphate biosynthetic process +GO:0009217,purine deoxyribonucleoside triphosphate catabolic process +GO:0009218,pyrimidine ribonucleotide metabolic process +GO:0009219,pyrimidine deoxyribonucleotide metabolic process +GO:0009220,pyrimidine ribonucleotide biosynthetic process +GO:0009221,pyrimidine deoxyribonucleotide biosynthetic process +GO:0009223,pyrimidine deoxyribonucleotide catabolic process +GO:0009225,nucleotide-sugar metabolic process +GO:0009226,nucleotide-sugar biosynthetic process +GO:0009227,nucleotide-sugar catabolic process +GO:0009233,menaquinone metabolic process +GO:0009235,cobalamin metabolic process +GO:0009236,cobalamin biosynthetic process +GO:0009240,isopentenyl diphosphate biosynthetic process +GO:0009247,glycolipid biosynthetic process +GO:0009249,protein lipoylation +GO:0009250,glucan biosynthetic process +GO:0009251,glucan catabolic process +GO:0009253,peptidoglycan catabolic process +GO:0009256,10-formyltetrahydrofolate metabolic process +GO:0009258,10-formyltetrahydrofolate catabolic process +GO:0009259,ribonucleotide metabolic process +GO:0009260,ribonucleotide biosynthetic process +GO:0009261,ribonucleotide catabolic process +GO:0009262,deoxyribonucleotide metabolic process +GO:0009263,deoxyribonucleotide biosynthetic process +GO:0009264,deoxyribonucleotide catabolic process +GO:0009265,2'-deoxyribonucleotide biosynthetic process +GO:0009266,response to temperature stimulus +GO:0009267,cellular response to starvation +GO:0009268,response to pH +GO:0009298,GDP-mannose biosynthetic process +GO:0009299,mRNA transcription +GO:0009301,snRNA transcription +GO:0009303,rRNA transcription +GO:0009304,tRNA transcription +GO:0009306,protein secretion +GO:0009308,amine metabolic process +GO:0009309,amine biosynthetic process +GO:0009310,amine catabolic process +GO:0009311,oligosaccharide metabolic process +GO:0009312,oligosaccharide biosynthetic process +GO:0009313,oligosaccharide catabolic process +GO:0009314,response to radiation +GO:0009386,translational attenuation +GO:0009394,2'-deoxyribonucleotide metabolic process +GO:0009395,phospholipid catabolic process +GO:0009396,folic acid-containing compound biosynthetic process +GO:0009397,folic acid-containing compound catabolic process +GO:0009404,toxin metabolic process +GO:0009405,pathogenesis +GO:0009408,response to heat +GO:0009409,response to cold +GO:0009410,response to xenobiotic stimulus +GO:0009411,response to UV +GO:0009414,response to water deprivation +GO:0009415,response to water +GO:0009416,response to light stimulus +GO:0009435,NAD biosynthetic process +GO:0009436,glyoxylate catabolic process +GO:0009437,carnitine metabolic process +GO:0009438,methylglyoxal metabolic process +GO:0009439,cyanate metabolic process +GO:0009440,cyanate catabolic process +GO:0009441,glycolate metabolic process +GO:0009445,putrescine metabolic process +GO:0009446,putrescine biosynthetic process +GO:0009447,putrescine catabolic process +GO:0009448,gamma-aminobutyric acid metabolic process +GO:0009449,gamma-aminobutyric acid biosynthetic process +GO:0009450,gamma-aminobutyric acid catabolic process +GO:0009451,RNA modification +GO:0009452,7-methylguanosine RNA capping +GO:0009566,fertilization +GO:0009581,detection of external stimulus +GO:0009582,detection of abiotic stimulus +GO:0009583,detection of light stimulus +GO:0009584,detection of visible light +GO:0009593,detection of chemical stimulus +GO:0009595,detection of biotic stimulus +GO:0009597,detection of virus +GO:0009607,response to biotic stimulus +GO:0009608,response to symbiont +GO:0009609,response to symbiotic bacterium +GO:0009611,response to wounding +GO:0009612,response to mechanical stimulus +GO:0009615,response to virus +GO:0009617,response to bacterium +GO:0009620,response to fungus +GO:0009624,response to nematode +GO:0009629,response to gravity +GO:0009631,cold acclimation +GO:0009635,response to herbicide +GO:0009636,response to toxic substance +GO:0009637,response to blue light +GO:0009642,response to light intensity +GO:0009648,photoperiodism +GO:0009649,entrainment of circadian clock +GO:0009650,UV protection +GO:0009651,response to salt stress +GO:0009698,phenylpropanoid metabolic process +GO:0009712,catechol-containing compound metabolic process +GO:0009713,catechol-containing compound biosynthetic process +GO:0009726,detection of endogenous stimulus +GO:0009730,detection of carbohydrate stimulus +GO:0009732,detection of hexose stimulus +GO:0009743,response to carbohydrate +GO:0009744,response to sucrose +GO:0009746,response to hexose +GO:0009749,response to glucose +GO:0009750,response to fructose +GO:0009753,response to jasmonic acid +GO:0009755,hormone-mediated signaling pathway +GO:0009756,carbohydrate mediated signaling +GO:0009785,blue light signaling pathway +GO:0009786,regulation of asymmetric cell division +GO:0009790,embryo development +GO:0009791,post-embryonic development +GO:0009792,embryo development ending in birth or egg hatching +GO:0009794,"regulation of mitotic cell cycle, embryonic" +GO:0009798,axis specification +GO:0009799,specification of symmetry +GO:0009804,coumarin metabolic process +GO:0009812,flavonoid metabolic process +GO:0009813,flavonoid biosynthetic process +GO:0009820,alkaloid metabolic process +GO:0009822,alkaloid catabolic process +GO:0009826,unidimensional cell growth +GO:0009838,abscission +GO:0009855,determination of bilateral symmetry +GO:0009880,embryonic pattern specification +GO:0009886,post-embryonic morphogenesis +GO:0009887,organ morphogenesis +GO:0009894,regulation of catabolic process +GO:0009895,negative regulation of catabolic process +GO:0009896,positive regulation of catabolic process +GO:0009912,auditory receptor cell fate commitment +GO:0009913,epidermal cell differentiation +GO:0009914,hormone transport +GO:0009946,proximal/distal axis specification +GO:0009948,anterior/posterior axis specification +GO:0009950,dorsal/ventral axis specification +GO:0009952,anterior/posterior pattern specification +GO:0009953,dorsal/ventral pattern formation +GO:0009954,proximal/distal pattern formation +GO:0009957,epidermal cell fate specification +GO:0009972,cytidine deamination +GO:0009988,cell-cell recognition +GO:0009991,response to extracellular stimulus +GO:0009992,cellular water homeostasis +GO:0009994,oocyte differentiation +GO:0009996,negative regulation of cell fate specification +GO:0010001,glial cell differentiation +GO:0010002,cardioblast differentiation +GO:0010025,wax biosynthetic process +GO:0010032,meiotic chromosome condensation +GO:0010034,response to acetate +GO:0010035,response to inorganic substance +GO:0010038,response to metal ion +GO:0010039,response to iron ion +GO:0010040,response to iron(II) ion +GO:0010041,response to iron(III) ion +GO:0010042,response to manganese ion +GO:0010043,response to zinc ion +GO:0010044,response to aluminum ion +GO:0010045,response to nickel cation +GO:0010046,response to mycotoxin +GO:0010070,zygote asymmetric cell division +GO:0010092,specification of organ identity +GO:0010107,potassium ion import +GO:0010133,proline catabolic process to glutamate +GO:0010138,pyrimidine ribonucleotide salvage +GO:0010155,regulation of proton transport +GO:0010157,response to chlorate +GO:0010159,specification of organ position +GO:0010165,response to X-ray +GO:0010166,wax metabolic process +GO:0010171,body morphogenesis +GO:0010172,embryonic body morphogenesis +GO:0010193,response to ozone +GO:0010212,response to ionizing radiation +GO:0010216,maintenance of DNA methylation +GO:0010224,response to UV-B +GO:0010225,response to UV-C +GO:0010226,response to lithium ion +GO:0010243,response to organonitrogen compound +GO:0010248,establishment or maintenance of transmembrane electrochemical gradient +GO:0010256,endomembrane system organization +GO:0010257,NADH dehydrogenase complex assembly +GO:0010259,multicellular organismal aging +GO:0010260,organ senescence +GO:0010265,SCF complex assembly +GO:0010266,response to vitamin B1 +GO:0010269,response to selenium ion +GO:0010273,detoxification of copper ion +GO:0010286,heat acclimation +GO:0010288,response to lead ion +GO:0010310,regulation of hydrogen peroxide metabolic process +GO:0010324,membrane invagination +GO:0010332,response to gamma radiation +GO:0010359,regulation of anion channel activity +GO:0010360,negative regulation of anion channel activity +GO:0010387,COP9 signalosome assembly +GO:0010388,cullin deneddylation +GO:0010389,regulation of G2/M transition of mitotic cell cycle +GO:0010390,histone monoubiquitination +GO:0010421,hydrogen peroxide-mediated programmed cell death +GO:0010424,DNA methylation on cytosine within a CG sequence +GO:0010430,fatty acid omega-oxidation +GO:0010446,response to alkaline pH +GO:0010447,response to acidic pH +GO:0010452,histone H3-K36 methylation +GO:0010453,regulation of cell fate commitment +GO:0010454,negative regulation of cell fate commitment +GO:0010455,positive regulation of cell fate commitment +GO:0010457,centriole-centriole cohesion +GO:0010458,exit from mitosis +GO:0010459,negative regulation of heart rate +GO:0010460,positive regulation of heart rate +GO:0010463,mesenchymal cell proliferation +GO:0010464,regulation of mesenchymal cell proliferation +GO:0010466,negative regulation of peptidase activity +GO:0010469,regulation of receptor activity +GO:0010470,regulation of gastrulation +GO:0010482,regulation of epidermal cell division +GO:0010498,proteasomal protein catabolic process +GO:0010499,proteasomal ubiquitin-independent protein catabolic process +GO:0010501,RNA secondary structure unwinding +GO:0010506,regulation of autophagy +GO:0010507,negative regulation of autophagy +GO:0010508,positive regulation of autophagy +GO:0010510,regulation of acetyl-CoA biosynthetic process from pyruvate +GO:0010511,regulation of phosphatidylinositol biosynthetic process +GO:0010512,negative regulation of phosphatidylinositol biosynthetic process +GO:0010513,positive regulation of phosphatidylinositol biosynthetic process +GO:0010517,regulation of phospholipase activity +GO:0010518,positive regulation of phospholipase activity +GO:0010519,negative regulation of phospholipase activity +GO:0010520,regulation of reciprocal meiotic recombination +GO:0010522,regulation of calcium ion transport into cytosol +GO:0010523,negative regulation of calcium ion transport into cytosol +GO:0010524,positive regulation of calcium ion transport into cytosol +GO:0010528,regulation of transposition +GO:0010529,negative regulation of transposition +GO:0010533,regulation of activation of Janus kinase activity +GO:0010534,regulation of activation of JAK2 kinase activity +GO:0010535,positive regulation of activation of JAK2 kinase activity +GO:0010536,positive regulation of activation of Janus kinase activity +GO:0010543,regulation of platelet activation +GO:0010544,negative regulation of platelet activation +GO:0010559,regulation of glycoprotein biosynthetic process +GO:0010560,positive regulation of glycoprotein biosynthetic process +GO:0010561,negative regulation of glycoprotein biosynthetic process +GO:0010563,negative regulation of phosphorus metabolic process +GO:0010564,regulation of cell cycle process +GO:0010565,regulation of cellular ketone metabolic process +GO:0010566,regulation of ketone biosynthetic process +GO:0010569,regulation of double-strand break repair via homologous recombination +GO:0010571,positive regulation of nuclear cell cycle DNA replication +GO:0010572,positive regulation of platelet activation +GO:0010573,vascular endothelial growth factor production +GO:0010574,regulation of vascular endothelial growth factor production +GO:0010575,positive regulation of vascular endothelial growth factor production +GO:0010578,regulation of adenylate cyclase activity involved in G-protein coupled receptor signaling pathway +GO:0010579,positive regulation of adenylate cyclase activity involved in G-protein coupled receptor signaling pathway +GO:0010586,miRNA metabolic process +GO:0010587,miRNA catabolic process +GO:0010591,regulation of lamellipodium assembly +GO:0010592,positive regulation of lamellipodium assembly +GO:0010593,negative regulation of lamellipodium assembly +GO:0010594,regulation of endothelial cell migration +GO:0010595,positive regulation of endothelial cell migration +GO:0010596,negative regulation of endothelial cell migration +GO:0010603,regulation of cytoplasmic mRNA processing body assembly +GO:0010606,positive regulation of cytoplasmic mRNA processing body assembly +GO:0010608,posttranscriptional regulation of gene expression +GO:0010609,mRNA localization resulting in posttranscriptional regulation of gene expression +GO:0010611,regulation of cardiac muscle hypertrophy +GO:0010612,regulation of cardiac muscle adaptation +GO:0010613,positive regulation of cardiac muscle hypertrophy +GO:0010614,negative regulation of cardiac muscle hypertrophy +GO:0010615,positive regulation of cardiac muscle adaptation +GO:0010616,negative regulation of cardiac muscle adaptation +GO:0010621,negative regulation of transcription by transcription factor localization +GO:0010623,developmental programmed cell death +GO:0010624,regulation of Schwann cell proliferation +GO:0010626,negative regulation of Schwann cell proliferation +GO:0010631,epithelial cell migration +GO:0010632,regulation of epithelial cell migration +GO:0010633,negative regulation of epithelial cell migration +GO:0010634,positive regulation of epithelial cell migration +GO:0010635,regulation of mitochondrial fusion +GO:0010636,positive regulation of mitochondrial fusion +GO:0010637,negative regulation of mitochondrial fusion +GO:0010638,positive regulation of organelle organization +GO:0010639,negative regulation of organelle organization +GO:0010640,regulation of platelet-derived growth factor receptor signaling pathway +GO:0010641,positive regulation of platelet-derived growth factor receptor signaling pathway +GO:0010642,negative regulation of platelet-derived growth factor receptor signaling pathway +GO:0010643,cell communication by chemical coupling +GO:0010644,cell communication by electrical coupling +GO:0010645,regulation of cell communication by chemical coupling +GO:0010649,regulation of cell communication by electrical coupling +GO:0010652,positive regulation of cell communication by chemical coupling +GO:0010656,negative regulation of muscle cell apoptotic process +GO:0010657,muscle cell apoptotic process +GO:0010658,striated muscle cell apoptotic process +GO:0010659,cardiac muscle cell apoptotic process +GO:0010660,regulation of muscle cell apoptotic process +GO:0010661,positive regulation of muscle cell apoptotic process +GO:0010662,regulation of striated muscle cell apoptotic process +GO:0010663,positive regulation of striated muscle cell apoptotic process +GO:0010664,negative regulation of striated muscle cell apoptotic process +GO:0010665,regulation of cardiac muscle cell apoptotic process +GO:0010666,positive regulation of cardiac muscle cell apoptotic process +GO:0010667,negative regulation of cardiac muscle cell apoptotic process +GO:0010668,ectodermal cell differentiation +GO:0010669,epithelial structure maintenance +GO:0010675,regulation of cellular carbohydrate metabolic process +GO:0010676,positive regulation of cellular carbohydrate metabolic process +GO:0010677,negative regulation of cellular carbohydrate metabolic process +GO:0010692,regulation of alkaline phosphatase activity +GO:0010693,negative regulation of alkaline phosphatase activity +GO:0010694,positive regulation of alkaline phosphatase activity +GO:0010700,negative regulation of norepinephrine secretion +GO:0010701,positive regulation of norepinephrine secretion +GO:0010710,regulation of collagen catabolic process +GO:0010712,regulation of collagen metabolic process +GO:0010713,negative regulation of collagen metabolic process +GO:0010714,positive regulation of collagen metabolic process +GO:0010715,regulation of extracellular matrix disassembly +GO:0010716,negative regulation of extracellular matrix disassembly +GO:0010717,regulation of epithelial to mesenchymal transition +GO:0010718,positive regulation of epithelial to mesenchymal transition +GO:0010719,negative regulation of epithelial to mesenchymal transition +GO:0010720,positive regulation of cell development +GO:0010721,negative regulation of cell development +GO:0010724,regulation of definitive erythrocyte differentiation +GO:0010726,positive regulation of hydrogen peroxide metabolic process +GO:0010727,negative regulation of hydrogen peroxide metabolic process +GO:0010728,regulation of hydrogen peroxide biosynthetic process +GO:0010730,negative regulation of hydrogen peroxide biosynthetic process +GO:0010735,positive regulation of transcription via serum response element binding +GO:0010737,protein kinase A signaling +GO:0010738,regulation of protein kinase A signaling +GO:0010739,positive regulation of protein kinase A signaling +GO:0010742,macrophage derived foam cell differentiation +GO:0010743,regulation of macrophage derived foam cell differentiation +GO:0010744,positive regulation of macrophage derived foam cell differentiation +GO:0010745,negative regulation of macrophage derived foam cell differentiation +GO:0010746,regulation of plasma membrane long-chain fatty acid transport +GO:0010748,negative regulation of plasma membrane long-chain fatty acid transport +GO:0010749,regulation of nitric oxide mediated signal transduction +GO:0010751,negative regulation of nitric oxide mediated signal transduction +GO:0010752,regulation of cGMP-mediated signaling +GO:0010755,regulation of plasminogen activation +GO:0010756,positive regulation of plasminogen activation +GO:0010757,negative regulation of plasminogen activation +GO:0010758,regulation of macrophage chemotaxis +GO:0010759,positive regulation of macrophage chemotaxis +GO:0010760,negative regulation of macrophage chemotaxis +GO:0010761,fibroblast migration +GO:0010762,regulation of fibroblast migration +GO:0010763,positive regulation of fibroblast migration +GO:0010764,negative regulation of fibroblast migration +GO:0010765,positive regulation of sodium ion transport +GO:0010766,negative regulation of sodium ion transport +GO:0010767,regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage +GO:0010769,regulation of cell morphogenesis involved in differentiation +GO:0010770,positive regulation of cell morphogenesis involved in differentiation +GO:0010771,negative regulation of cell morphogenesis involved in differentiation +GO:0010792,DNA double-strand break processing involved in repair via single-strand annealing +GO:0010793,regulation of mRNA export from nucleus +GO:0010796,regulation of multivesicular body size +GO:0010799,regulation of peptidyl-threonine phosphorylation +GO:0010800,positive regulation of peptidyl-threonine phosphorylation +GO:0010801,negative regulation of peptidyl-threonine phosphorylation +GO:0010803,regulation of tumor necrosis factor-mediated signaling pathway +GO:0010804,negative regulation of tumor necrosis factor-mediated signaling pathway +GO:0010807,regulation of synaptic vesicle priming +GO:0010810,regulation of cell-substrate adhesion +GO:0010811,positive regulation of cell-substrate adhesion +GO:0010812,negative regulation of cell-substrate adhesion +GO:0010813,neuropeptide catabolic process +GO:0010815,bradykinin catabolic process +GO:0010817,regulation of hormone levels +GO:0010818,T cell chemotaxis +GO:0010819,regulation of T cell chemotaxis +GO:0010820,positive regulation of T cell chemotaxis +GO:0010821,regulation of mitochondrion organization +GO:0010822,positive regulation of mitochondrion organization +GO:0010823,negative regulation of mitochondrion organization +GO:0010824,regulation of centrosome duplication +GO:0010825,positive regulation of centrosome duplication +GO:0010826,negative regulation of centrosome duplication +GO:0010827,regulation of glucose transport +GO:0010828,positive regulation of glucose transport +GO:0010829,negative regulation of glucose transport +GO:0010830,regulation of myotube differentiation +GO:0010831,positive regulation of myotube differentiation +GO:0010832,negative regulation of myotube differentiation +GO:0010833,telomere maintenance via telomere lengthening +GO:0010835,regulation of protein ADP-ribosylation +GO:0010837,regulation of keratinocyte proliferation +GO:0010838,positive regulation of keratinocyte proliferation +GO:0010839,negative regulation of keratinocyte proliferation +GO:0010840,"regulation of circadian sleep/wake cycle, wakefulness" +GO:0010841,"positive regulation of circadian sleep/wake cycle, wakefulness" +GO:0010842,retina layer formation +GO:0010845,positive regulation of reciprocal meiotic recombination +GO:0010847,regulation of chromatin assembly +GO:0010848,regulation of chromatin disassembly +GO:0010862,positive regulation of pathway-restricted SMAD protein phosphorylation +GO:0010863,positive regulation of phospholipase C activity +GO:0010866,regulation of triglyceride biosynthetic process +GO:0010867,positive regulation of triglyceride biosynthetic process +GO:0010868,negative regulation of triglyceride biosynthetic process +GO:0010869,regulation of receptor biosynthetic process +GO:0010870,positive regulation of receptor biosynthetic process +GO:0010871,negative regulation of receptor biosynthetic process +GO:0010872,regulation of cholesterol esterification +GO:0010873,positive regulation of cholesterol esterification +GO:0010874,regulation of cholesterol efflux +GO:0010875,positive regulation of cholesterol efflux +GO:0010876,lipid localization +GO:0010880,regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum +GO:0010881,regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion +GO:0010882,regulation of cardiac muscle contraction by calcium ion signaling +GO:0010883,regulation of lipid storage +GO:0010884,positive regulation of lipid storage +GO:0010885,regulation of cholesterol storage +GO:0010886,positive regulation of cholesterol storage +GO:0010887,negative regulation of cholesterol storage +GO:0010888,negative regulation of lipid storage +GO:0010889,regulation of sequestering of triglyceride +GO:0010890,positive regulation of sequestering of triglyceride +GO:0010891,negative regulation of sequestering of triglyceride +GO:0010893,positive regulation of steroid biosynthetic process +GO:0010894,negative regulation of steroid biosynthetic process +GO:0010896,regulation of triglyceride catabolic process +GO:0010897,negative regulation of triglyceride catabolic process +GO:0010898,positive regulation of triglyceride catabolic process +GO:0010899,regulation of phosphatidylcholine catabolic process +GO:0010901,regulation of very-low-density lipoprotein particle remodeling +GO:0010902,positive regulation of very-low-density lipoprotein particle remodeling +GO:0010903,negative regulation of very-low-density lipoprotein particle remodeling +GO:0010906,regulation of glucose metabolic process +GO:0010907,positive regulation of glucose metabolic process +GO:0010908,regulation of heparan sulfate proteoglycan biosynthetic process +GO:0010909,positive regulation of heparan sulfate proteoglycan biosynthetic process +GO:0010911,regulation of isomerase activity +GO:0010912,positive regulation of isomerase activity +GO:0010915,regulation of very-low-density lipoprotein particle clearance +GO:0010916,negative regulation of very-low-density lipoprotein particle clearance +GO:0010917,negative regulation of mitochondrial membrane potential +GO:0010918,positive regulation of mitochondrial membrane potential +GO:0010919,regulation of inositol phosphate biosynthetic process +GO:0010921,regulation of phosphatase activity +GO:0010922,positive regulation of phosphatase activity +GO:0010923,negative regulation of phosphatase activity +GO:0010927,cellular component assembly involved in morphogenesis +GO:0010935,regulation of macrophage cytokine production +GO:0010936,negative regulation of macrophage cytokine production +GO:0010939,regulation of necrotic cell death +GO:0010940,positive regulation of necrotic cell death +GO:0010942,positive regulation of cell death +GO:0010944,negative regulation of transcription by competitive promoter binding +GO:0010948,negative regulation of cell cycle process +GO:0010949,negative regulation of intestinal phytosterol absorption +GO:0010950,positive regulation of endopeptidase activity +GO:0010951,negative regulation of endopeptidase activity +GO:0010952,positive regulation of peptidase activity +GO:0010954,positive regulation of protein processing +GO:0010955,negative regulation of protein processing +GO:0010956,negative regulation of calcidiol 1-monooxygenase activity +GO:0010957,negative regulation of vitamin D biosynthetic process +GO:0010958,regulation of amino acid import +GO:0010959,regulation of metal ion transport +GO:0010960,magnesium ion homeostasis +GO:0010961,cellular magnesium ion homeostasis +GO:0010962,regulation of glucan biosynthetic process +GO:0010965,regulation of mitotic sister chromatid separation +GO:0010966,regulation of phosphate transport +GO:0010968,regulation of microtubule nucleation +GO:0010970,establishment of localization by movement along microtubule +GO:0010971,positive regulation of G2/M transition of mitotic cell cycle +GO:0010972,negative regulation of G2/M transition of mitotic cell cycle +GO:0010975,regulation of neuron projection development +GO:0010976,positive regulation of neuron projection development +GO:0010977,negative regulation of neuron projection development +GO:0010979,regulation of vitamin D 24-hydroxylase activity +GO:0010980,positive regulation of vitamin D 24-hydroxylase activity +GO:0010982,regulation of high-density lipoprotein particle clearance +GO:0010983,positive regulation of high-density lipoprotein particle clearance +GO:0010984,regulation of lipoprotein particle clearance +GO:0010985,negative regulation of lipoprotein particle clearance +GO:0010986,positive regulation of lipoprotein particle clearance +GO:0010988,regulation of low-density lipoprotein particle clearance +GO:0010989,negative regulation of low-density lipoprotein particle clearance +GO:0010990,regulation of SMAD protein complex assembly +GO:0010991,negative regulation of SMAD protein complex assembly +GO:0010992,ubiquitin homeostasis +GO:0010993,regulation of ubiquitin homeostasis +GO:0010994,free ubiquitin chain polymerization +GO:0010996,response to auditory stimulus +GO:0010998,regulation of translational initiation by eIF2 alpha phosphorylation +GO:0010999,regulation of eIF2 alpha phosphorylation by heme +GO:0012502,induction of programmed cell death +GO:0014002,astrocyte development +GO:0014003,oligodendrocyte development +GO:0014009,glial cell proliferation +GO:0014010,Schwann cell proliferation +GO:0014012,peripheral nervous system axon regeneration +GO:0014013,regulation of gliogenesis +GO:0014014,negative regulation of gliogenesis +GO:0014015,positive regulation of gliogenesis +GO:0014016,neuroblast differentiation +GO:0014020,primary neural tube formation +GO:0014022,neural plate elongation +GO:0014028,notochord formation +GO:0014029,neural crest formation +GO:0014031,mesenchymal cell development +GO:0014032,neural crest cell development +GO:0014033,neural crest cell differentiation +GO:0014034,neural crest cell fate commitment +GO:0014037,Schwann cell differentiation +GO:0014038,regulation of Schwann cell differentiation +GO:0014040,positive regulation of Schwann cell differentiation +GO:0014041,regulation of neuron maturation +GO:0014042,positive regulation of neuron maturation +GO:0014043,negative regulation of neuron maturation +GO:0014044,Schwann cell development +GO:0014045,establishment of endothelial blood-brain barrier +GO:0014047,glutamate secretion +GO:0014048,regulation of glutamate secretion +GO:0014049,positive regulation of glutamate secretion +GO:0014050,negative regulation of glutamate secretion +GO:0014051,gamma-aminobutyric acid secretion +GO:0014052,regulation of gamma-aminobutyric acid secretion +GO:0014053,negative regulation of gamma-aminobutyric acid secretion +GO:0014054,positive regulation of gamma-aminobutyric acid secretion +GO:0014056,"regulation of acetylcholine secretion, neurotransmission" +GO:0014059,regulation of dopamine secretion +GO:0014060,regulation of epinephrine secretion +GO:0014061,regulation of norepinephrine secretion +GO:0014062,regulation of serotonin secretion +GO:0014063,negative regulation of serotonin secretion +GO:0014065,phosphatidylinositol 3-kinase signaling +GO:0014066,regulation of phosphatidylinositol 3-kinase signaling +GO:0014067,negative regulation of phosphatidylinositol 3-kinase signaling +GO:0014068,positive regulation of phosphatidylinositol 3-kinase signaling +GO:0014070,response to organic cyclic compound +GO:0014072,response to isoquinoline alkaloid +GO:0014074,response to purine-containing compound +GO:0014075,response to amine +GO:0014076,response to fluoxetine +GO:0014706,striated muscle tissue development +GO:0014707,branchiomeric skeletal muscle development +GO:0014717,regulation of satellite cell activation involved in skeletal muscle regeneration +GO:0014718,positive regulation of satellite cell activation involved in skeletal muscle regeneration +GO:0014719,skeletal muscle satellite cell activation +GO:0014721,twitch skeletal muscle contraction +GO:0014722,regulation of skeletal muscle contraction by calcium ion signaling +GO:0014724,regulation of twitch skeletal muscle contraction +GO:0014728,regulation of the force of skeletal muscle contraction +GO:0014732,skeletal muscle atrophy +GO:0014733,regulation of skeletal muscle adaptation +GO:0014735,regulation of muscle atrophy +GO:0014736,negative regulation of muscle atrophy +GO:0014738,regulation of muscle hyperplasia +GO:0014740,negative regulation of muscle hyperplasia +GO:0014741,negative regulation of muscle hypertrophy +GO:0014742,positive regulation of muscle hypertrophy +GO:0014743,regulation of muscle hypertrophy +GO:0014744,positive regulation of muscle adaptation +GO:0014745,negative regulation of muscle adaptation +GO:0014805,smooth muscle adaptation +GO:0014806,smooth muscle hyperplasia +GO:0014807,regulation of somitogenesis +GO:0014808,release of sequestered calcium ion into cytosol by sarcoplasmic reticulum +GO:0014809,regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion +GO:0014812,muscle cell migration +GO:0014816,skeletal muscle satellite cell differentiation +GO:0014819,regulation of skeletal muscle contraction +GO:0014820,tonic smooth muscle contraction +GO:0014821,phasic smooth muscle contraction +GO:0014823,response to activity +GO:0014824,artery smooth muscle contraction +GO:0014826,vein smooth muscle contraction +GO:0014827,intestine smooth muscle contraction +GO:0014829,vascular smooth muscle contraction +GO:0014831,gastro-intestinal system smooth muscle contraction +GO:0014832,urinary bladder smooth muscle contraction +GO:0014834,skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration +GO:0014835,myoblast differentiation involved in skeletal muscle regeneration +GO:0014839,myoblast migration involved in skeletal muscle regeneration +GO:0014842,regulation of skeletal muscle satellite cell proliferation +GO:0014846,esophagus smooth muscle contraction +GO:0014848,urinary tract smooth muscle contraction +GO:0014850,response to muscle activity +GO:0014854,response to inactivity +GO:0014855,striated muscle cell proliferation +GO:0014856,skeletal muscle cell proliferation +GO:0014857,regulation of skeletal muscle cell proliferation +GO:0014858,positive regulation of skeletal muscle cell proliferation +GO:0014859,negative regulation of skeletal muscle cell proliferation +GO:0014862,regulation of skeletal muscle contraction by chemo-mechanical energy conversion +GO:0014866,skeletal myofibril assembly +GO:0014870,response to muscle inactivity +GO:0014873,response to muscle activity involved in regulation of muscle adaptation +GO:0014874,response to stimulus involved in regulation of muscle adaptation +GO:0014877,response to muscle inactivity involved in regulation of muscle adaptation +GO:0014878,response to electrical stimulus involved in regulation of muscle adaptation +GO:0014883,transition between fast and slow fiber +GO:0014886,transition between slow and fast fiber +GO:0014887,cardiac muscle adaptation +GO:0014888,striated muscle adaptation +GO:0014889,muscle atrophy +GO:0014891,striated muscle atrophy +GO:0014894,response to denervation involved in regulation of muscle adaptation +GO:0014896,muscle hypertrophy +GO:0014897,striated muscle hypertrophy +GO:0014898,cardiac muscle hypertrophy in response to stress +GO:0014900,muscle hyperplasia +GO:0014902,myotube differentiation +GO:0014904,myotube cell development +GO:0014908,myotube differentiation involved in skeletal muscle regeneration +GO:0014909,smooth muscle cell migration +GO:0014910,regulation of smooth muscle cell migration +GO:0014911,positive regulation of smooth muscle cell migration +GO:0014912,negative regulation of smooth muscle cell migration +GO:0014916,regulation of lung blood pressure +GO:0015012,heparan sulfate proteoglycan biosynthetic process +GO:0015014,"heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process" +GO:0015015,"heparan sulfate proteoglycan biosynthetic process, enzymatic modification" +GO:0015074,DNA integration +GO:0015669,gas transport +GO:0015670,carbon dioxide transport +GO:0015671,oxygen transport +GO:0015672,monovalent inorganic cation transport +GO:0015677,copper ion import +GO:0015680,intracellular copper ion transport +GO:0015682,ferric iron transport +GO:0015684,ferrous iron transport +GO:0015688,iron chelate transport +GO:0015691,cadmium ion transport +GO:0015693,magnesium ion transport +GO:0015695,organic cation transport +GO:0015696,ammonium transport +GO:0015697,quaternary ammonium group transport +GO:0015698,inorganic anion transport +GO:0015701,bicarbonate transport +GO:0015705,iodide transport +GO:0015711,organic anion transport +GO:0015712,hexose phosphate transport +GO:0015718,monocarboxylic acid transport +GO:0015721,bile acid and bile salt transport +GO:0015722,canalicular bile acid transport +GO:0015727,lactate transport +GO:0015732,prostaglandin transport +GO:0015740,C4-dicarboxylate transport +GO:0015742,alpha-ketoglutarate transport +GO:0015744,succinate transport +GO:0015746,citrate transport +GO:0015747,urate transport +GO:0015748,organophosphate ester transport +GO:0015749,monosaccharide transport +GO:0015755,fructose transport +GO:0015758,glucose transport +GO:0015760,glucose-6-phosphate transport +GO:0015780,nucleotide-sugar transport +GO:0015781,pyrimidine nucleotide-sugar transport +GO:0015785,UDP-galactose transport +GO:0015788,UDP-N-acetylglucosamine transport +GO:0015791,polyol transport +GO:0015793,glycerol transport +GO:0015798,myo-inositol transport +GO:0015800,acidic amino acid transport +GO:0015801,aromatic amino acid transport +GO:0015802,basic amino acid transport +GO:0015803,branched-chain amino acid transport +GO:0015804,neutral amino acid transport +GO:0015807,L-amino acid transport +GO:0015808,L-alanine transport +GO:0015809,arginine transport +GO:0015810,aspartate transport +GO:0015811,L-cystine transport +GO:0015812,gamma-aminobutyric acid transport +GO:0015813,L-glutamate transport +GO:0015816,glycine transport +GO:0015817,histidine transport +GO:0015819,lysine transport +GO:0015820,leucine transport +GO:0015822,ornithine transport +GO:0015824,proline transport +GO:0015825,L-serine transport +GO:0015827,tryptophan transport +GO:0015833,peptide transport +GO:0015837,amine transport +GO:0015838,amino-acid betaine transport +GO:0015840,urea transport +GO:0015842,aminergic neurotransmitter loading into synaptic vesicle +GO:0015844,monoamine transport +GO:0015846,polyamine transport +GO:0015847,putrescine transport +GO:0015849,organic acid transport +GO:0015850,organic hydroxy compound transport +GO:0015851,nucleobase transport +GO:0015853,adenine transport +GO:0015855,pyrimidine nucleobase transport +GO:0015858,nucleoside transport +GO:0015860,purine nucleoside transmembrane transport +GO:0015864,pyrimidine nucleoside transport +GO:0015865,purine nucleotide transport +GO:0015866,ADP transport +GO:0015867,ATP transport +GO:0015868,purine ribonucleotide transport +GO:0015870,acetylcholine transport +GO:0015871,choline transport +GO:0015872,dopamine transport +GO:0015874,norepinephrine transport +GO:0015876,acetyl-CoA transport +GO:0015879,carnitine transport +GO:0015880,coenzyme A transport +GO:0015881,creatine transport +GO:0015882,L-ascorbic acid transport +GO:0015884,folic acid transport +GO:0015886,heme transport +GO:0015888,thiamine transport +GO:0015889,cobalamin transport +GO:0015891,siderophore transport +GO:0015893,drug transport +GO:0015908,fatty acid transport +GO:0015909,long-chain fatty acid transport +GO:0015910,peroxisomal long-chain fatty acid import +GO:0015914,phospholipid transport +GO:0015916,fatty-acyl-CoA transport +GO:0015918,sterol transport +GO:0015919,peroxisomal membrane transport +GO:0015920,lipopolysaccharide transport +GO:0015931,nucleobase-containing compound transport +GO:0015936,coenzyme A metabolic process +GO:0015937,coenzyme A biosynthetic process +GO:0015938,coenzyme A catabolic process +GO:0015939,pantothenate metabolic process +GO:0015942,formate metabolic process +GO:0015949,nucleobase-containing small molecule interconversion +GO:0015959,diadenosine polyphosphate metabolic process +GO:0015960,diadenosine polyphosphate biosynthetic process +GO:0015965,diadenosine tetraphosphate metabolic process +GO:0015966,diadenosine tetraphosphate biosynthetic process +GO:0015980,energy derivation by oxidation of organic compounds +GO:0015985,"energy coupled proton transport, down electrochemical gradient" +GO:0015986,ATP synthesis coupled proton transport +GO:0015988,"energy coupled proton transmembrane transport, against electrochemical gradient" +GO:0015991,ATP hydrolysis coupled proton transport +GO:0015992,proton transport +GO:0015993,molecular hydrogen transport +GO:0016024,CDP-diacylglycerol biosynthetic process +GO:0016031,tRNA import into mitochondrion +GO:0016032,viral process +GO:0016042,lipid catabolic process +GO:0016045,detection of bacterium +GO:0016048,detection of temperature stimulus +GO:0016049,cell growth +GO:0016050,vesicle organization +GO:0016051,carbohydrate biosynthetic process +GO:0016052,carbohydrate catabolic process +GO:0016053,organic acid biosynthetic process +GO:0016054,organic acid catabolic process +GO:0016055,Wnt signaling pathway +GO:0016056,rhodopsin mediated signaling pathway +GO:0016062,adaptation of rhodopsin mediated signaling +GO:0016064,immunoglobulin mediated immune response +GO:0016071,mRNA metabolic process +GO:0016072,rRNA metabolic process +GO:0016073,snRNA metabolic process +GO:0016074,snoRNA metabolic process +GO:0016075,rRNA catabolic process +GO:0016078,tRNA catabolic process +GO:0016079,synaptic vesicle exocytosis +GO:0016080,synaptic vesicle targeting +GO:0016081,synaptic vesicle docking +GO:0016082,synaptic vesicle priming +GO:0016093,polyprenol metabolic process +GO:0016094,polyprenol biosynthetic process +GO:0016095,polyprenol catabolic process +GO:0016098,monoterpenoid metabolic process +GO:0016101,diterpenoid metabolic process +GO:0016102,diterpenoid biosynthetic process +GO:0016103,diterpenoid catabolic process +GO:0016107,sesquiterpenoid catabolic process +GO:0016114,terpenoid biosynthetic process +GO:0016115,terpenoid catabolic process +GO:0016119,carotene metabolic process +GO:0016125,sterol metabolic process +GO:0016126,sterol biosynthetic process +GO:0016127,sterol catabolic process +GO:0016137,glycoside metabolic process +GO:0016139,glycoside catabolic process +GO:0016180,snRNA processing +GO:0016188,synaptic vesicle maturation +GO:0016197,endosomal transport +GO:0016198,axon choice point recognition +GO:0016199,axon midline choice point recognition +GO:0016202,regulation of striated muscle tissue development +GO:0016226,iron-sulfur cluster assembly +GO:0016233,telomere capping +GO:0016236,macroautophagy +GO:0016237,lysosomal microautophagy +GO:0016239,positive regulation of macroautophagy +GO:0016241,regulation of macroautophagy +GO:0016242,negative regulation of macroautophagy +GO:0016246,RNA interference +GO:0016254,preassembly of GPI anchor in ER membrane +GO:0016255,attachment of GPI anchor to protein +GO:0016256,N-glycan processing to lysosome +GO:0016259,selenocysteine metabolic process +GO:0016264,gap junction assembly +GO:0016266,O-glycan processing +GO:0016267,"O-glycan processing, core 1" +GO:0016311,dephosphorylation +GO:0016320,endoplasmic reticulum membrane fusion +GO:0016321,female meiosis chromosome segregation +GO:0016322,neuron remodeling +GO:0016331,morphogenesis of embryonic epithelium +GO:0016332,establishment or maintenance of polarity of embryonic epithelium +GO:0016337,single organismal cell-cell adhesion +GO:0016338,calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules +GO:0016339,calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules +GO:0016340,calcium-dependent cell-matrix adhesion +GO:0016344,meiotic chromosome movement towards spindle pole +GO:0016358,dendrite development +GO:0016441,posttranscriptional gene silencing +GO:0016444,somatic cell DNA recombination +GO:0016445,somatic diversification of immunoglobulins +GO:0016446,somatic hypermutation of immunoglobulin genes +GO:0016447,somatic recombination of immunoglobulin gene segments +GO:0016458,gene silencing +GO:0016476,regulation of embryonic cell shape +GO:0016477,cell migration +GO:0016479,negative regulation of transcription from RNA polymerase I promoter +GO:0016480,negative regulation of transcription from RNA polymerase III promoter +GO:0016482,cytoplasmic transport +GO:0016485,protein processing +GO:0016486,peptide hormone processing +GO:0016487,farnesol metabolic process +GO:0016488,farnesol catabolic process +GO:0016525,negative regulation of angiogenesis +GO:0016539,intein-mediated protein splicing +GO:0016540,protein autoprocessing +GO:0016553,base conversion or substitution editing +GO:0016554,cytidine to uridine editing +GO:0016556,mRNA modification +GO:0016557,peroxisome membrane biogenesis +GO:0016558,protein import into peroxisome matrix +GO:0016559,peroxisome fission +GO:0016560,"protein import into peroxisome matrix, docking" +GO:0016561,"protein import into peroxisome matrix, translocation" +GO:0016567,protein ubiquitination +GO:0016568,chromatin modification +GO:0016569,covalent chromatin modification +GO:0016570,histone modification +GO:0016571,histone methylation +GO:0016572,histone phosphorylation +GO:0016573,histone acetylation +GO:0016574,histone ubiquitination +GO:0016575,histone deacetylation +GO:0016576,histone dephosphorylation +GO:0016577,histone demethylation +GO:0016578,histone deubiquitination +GO:0016579,protein deubiquitination +GO:0016584,nucleosome positioning +GO:0016598,protein arginylation +GO:0016601,Rac protein signal transduction +GO:0016925,protein sumoylation +GO:0016926,protein desumoylation +GO:0016973,poly(A)+ mRNA export from nucleus +GO:0016998,cell wall macromolecule catabolic process +GO:0017004,cytochrome complex assembly +GO:0017014,protein nitrosylation +GO:0017015,regulation of transforming growth factor beta receptor signaling pathway +GO:0017038,protein import +GO:0017055,negative regulation of RNA polymerase II transcriptional preinitiation complex assembly +GO:0017062,respiratory chain complex III assembly +GO:0017085,response to insecticide +GO:0017121,phospholipid scrambling +GO:0017143,insecticide metabolic process +GO:0017144,drug metabolic process +GO:0017145,stem cell division +GO:0017148,negative regulation of translation +GO:0017156,calcium ion regulated exocytosis +GO:0017157,regulation of exocytosis +GO:0017158,regulation of calcium ion-dependent exocytosis +GO:0017182,peptidyl-diphthamide metabolic process +GO:0017183,peptidyl-diphthamide biosynthetic process from peptidyl-histidine +GO:0017185,peptidyl-lysine hydroxylation +GO:0017186,"peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase" +GO:0017187,peptidyl-glutamic acid carboxylation +GO:0017196,N-terminal peptidyl-methionine acetylation +GO:0017198,N-terminal peptidyl-serine acetylation +GO:0018002,N-terminal peptidyl-glutamic acid acetylation +GO:0018003,peptidyl-lysine N6-acetylation +GO:0018008,N-terminal peptidyl-glycine N-myristoylation +GO:0018022,peptidyl-lysine methylation +GO:0018023,peptidyl-lysine trimethylation +GO:0018026,peptidyl-lysine monomethylation +GO:0018027,peptidyl-lysine dimethylation +GO:0018065,protein-cofactor linkage +GO:0018076,N-terminal peptidyl-lysine acetylation +GO:0018094,protein polyglycylation +GO:0018095,protein polyglutamylation +GO:0018101,protein citrullination +GO:0018103,protein C-linked glycosylation +GO:0018105,peptidyl-serine phosphorylation +GO:0018107,peptidyl-threonine phosphorylation +GO:0018108,peptidyl-tyrosine phosphorylation +GO:0018117,protein adenylylation +GO:0018119,peptidyl-cysteine S-nitrosylation +GO:0018125,peptidyl-cysteine methylation +GO:0018126,protein hydroxylation +GO:0018146,keratan sulfate biosynthetic process +GO:0018149,peptide cross-linking +GO:0018158,protein oxidation +GO:0018171,peptidyl-cysteine oxidation +GO:0018175,protein nucleotidylation +GO:0018195,peptidyl-arginine modification +GO:0018196,peptidyl-asparagine modification +GO:0018197,peptidyl-aspartic acid modification +GO:0018198,peptidyl-cysteine modification +GO:0018199,peptidyl-glutamine modification +GO:0018200,peptidyl-glutamic acid modification +GO:0018201,peptidyl-glycine modification +GO:0018202,peptidyl-histidine modification +GO:0018205,peptidyl-lysine modification +GO:0018206,peptidyl-methionine modification +GO:0018208,peptidyl-proline modification +GO:0018209,peptidyl-serine modification +GO:0018210,peptidyl-threonine modification +GO:0018211,peptidyl-tryptophan modification +GO:0018212,peptidyl-tyrosine modification +GO:0018214,protein carboxylation +GO:0018216,peptidyl-arginine methylation +GO:0018230,peptidyl-L-cysteine S-palmitoylation +GO:0018231,peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine +GO:0018242,protein O-linked glycosylation via serine +GO:0018243,protein O-linked glycosylation via threonine +GO:0018277,protein deamination +GO:0018279,protein N-linked glycosylation via asparagine +GO:0018282,metal incorporation into metallo-sulfur cluster +GO:0018283,iron incorporation into metallo-sulfur cluster +GO:0018298,protein-chromophore linkage +GO:0018307,enzyme active site formation +GO:0018317,protein C-linked glycosylation via tryptophan +GO:0018342,protein prenylation +GO:0018343,protein farnesylation +GO:0018344,protein geranylgeranylation +GO:0018345,protein palmitoylation +GO:0018352,protein-pyridoxal-5-phosphate linkage +GO:0018364,peptidyl-glutamine methylation +GO:0018377,protein myristoylation +GO:0018393,internal peptidyl-lysine acetylation +GO:0018394,peptidyl-lysine acetylation +GO:0018401,peptidyl-proline hydroxylation to 4-hydroxy-L-proline +GO:0018406,protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan +GO:0018410,C-terminal protein amino acid modification +GO:0018879,biphenyl metabolic process +GO:0018894,dibenzo-p-dioxin metabolic process +GO:0018904,ether metabolic process +GO:0018916,nitrobenzene metabolic process +GO:0018931,naphthalene metabolic process +GO:0018958,phenol-containing compound metabolic process +GO:0018963,phthalate metabolic process +GO:0018992,germ-line sex determination +GO:0019042,viral latency +GO:0019043,establishment of viral latency +GO:0019046,release from viral latency +GO:0019048,modulation by virus of host morphology or physiology +GO:0019049,evasion or tolerance of host defenses by virus +GO:0019050,suppression by virus of host apoptotic process +GO:0019054,modulation by virus of host process +GO:0019058,viral life cycle +GO:0019060,intracellular transport of viral protein in host cell +GO:0019062,virion attachment to host cell +GO:0019064,fusion of virus membrane with host plasma membrane +GO:0019065,receptor-mediated endocytosis of virus by host cell +GO:0019068,virion assembly +GO:0019072,viral genome packaging +GO:0019074,viral RNA genome packaging +GO:0019075,virus maturation +GO:0019076,viral release from host cell +GO:0019079,viral genome replication +GO:0019080,viral gene expression +GO:0019082,viral protein processing +GO:0019083,viral transcription +GO:0019086,late viral transcription +GO:0019087,transformation of host cell by virus +GO:0019098,reproductive behavior +GO:0019100,male germ-line sex determination +GO:0019184,nonribosomal peptide biosynthetic process +GO:0019216,regulation of lipid metabolic process +GO:0019217,regulation of fatty acid metabolic process +GO:0019218,regulation of steroid metabolic process +GO:0019221,cytokine-mediated signaling pathway +GO:0019226,transmission of nerve impulse +GO:0019227,neuronal action potential propagation +GO:0019228,neuronal action potential +GO:0019229,regulation of vasoconstriction +GO:0019230,proprioception +GO:0019233,sensory perception of pain +GO:0019236,response to pheromone +GO:0019240,citrulline biosynthetic process +GO:0019243,methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione +GO:0019244,lactate biosynthetic process from pyruvate +GO:0019249,lactate biosynthetic process +GO:0019254,"carnitine metabolic process, CoA-linked" +GO:0019255,glucose 1-phosphate metabolic process +GO:0019262,N-acetylneuraminate catabolic process +GO:0019264,glycine biosynthetic process from serine +GO:0019265,"glycine biosynthetic process, by transamination of glyoxylate" +GO:0019276,UDP-N-acetylgalactosamine metabolic process +GO:0019284,L-methionine biosynthetic process from S-adenosylmethionine +GO:0019285,glycine betaine biosynthetic process from choline +GO:0019287,"isopentenyl diphosphate biosynthetic process, mevalonate pathway" +GO:0019303,D-ribose catabolic process +GO:0019317,fucose catabolic process +GO:0019318,hexose metabolic process +GO:0019319,hexose biosynthetic process +GO:0019320,hexose catabolic process +GO:0019321,pentose metabolic process +GO:0019322,pentose biosynthetic process +GO:0019323,pentose catabolic process +GO:0019336,phenol-containing compound catabolic process +GO:0019343,cysteine biosynthetic process via cystathionine +GO:0019344,cysteine biosynthetic process +GO:0019346,transsulfuration +GO:0019348,dolichol metabolic process +GO:0019355,nicotinamide nucleotide biosynthetic process from aspartate +GO:0019359,nicotinamide nucleotide biosynthetic process +GO:0019362,pyridine nucleotide metabolic process +GO:0019363,pyridine nucleotide biosynthetic process +GO:0019364,pyridine nucleotide catabolic process +GO:0019367,"fatty acid elongation, saturated fatty acid" +GO:0019368,"fatty acid elongation, unsaturated fatty acid" +GO:0019369,arachidonic acid metabolic process +GO:0019370,leukotriene biosynthetic process +GO:0019371,cyclooxygenase pathway +GO:0019372,lipoxygenase pathway +GO:0019373,epoxygenase P450 pathway +GO:0019374,galactolipid metabolic process +GO:0019375,galactolipid biosynthetic process +GO:0019376,galactolipid catabolic process +GO:0019377,glycolipid catabolic process +GO:0019388,galactose catabolic process +GO:0019395,fatty acid oxidation +GO:0019400,alditol metabolic process +GO:0019401,alditol biosynthetic process +GO:0019405,alditol catabolic process +GO:0019408,dolichol biosynthetic process +GO:0019413,acetate biosynthetic process +GO:0019417,sulfur oxidation +GO:0019418,sulfide oxidation +GO:0019427,acetyl-CoA biosynthetic process from acetate +GO:0019430,removal of superoxide radicals +GO:0019432,triglyceride biosynthetic process +GO:0019433,triglyceride catabolic process +GO:0019439,aromatic compound catabolic process +GO:0019441,tryptophan catabolic process to kynurenine +GO:0019442,tryptophan catabolic process to acetyl-CoA +GO:0019448,L-cysteine catabolic process +GO:0019464,glycine decarboxylation via glycine cleavage system +GO:0019470,4-hydroxyproline catabolic process +GO:0019471,4-hydroxyproline metabolic process +GO:0019474,L-lysine catabolic process to acetyl-CoA +GO:0019477,L-lysine catabolic process +GO:0019478,D-amino acid catabolic process +GO:0019482,beta-alanine metabolic process +GO:0019483,beta-alanine biosynthetic process +GO:0019509,L-methionine biosynthetic process from methylthioadenosine +GO:0019511,peptidyl-proline hydroxylation +GO:0019520,aldonic acid metabolic process +GO:0019521,D-gluconate metabolic process +GO:0019530,taurine metabolic process +GO:0019532,oxalate transport +GO:0019541,propionate metabolic process +GO:0019542,propionate biosynthetic process +GO:0019550,glutamate catabolic process to aspartate +GO:0019551,glutamate catabolic process to 2-oxoglutarate +GO:0019556,histidine catabolic process to glutamate and formamide +GO:0019557,histidine catabolic process to glutamate and formate +GO:0019563,glycerol catabolic process +GO:0019566,arabinose metabolic process +GO:0019585,glucuronate metabolic process +GO:0019605,butyrate metabolic process +GO:0019614,catechol-containing compound catabolic process +GO:0019626,short-chain fatty acid catabolic process +GO:0019627,urea metabolic process +GO:0019637,organophosphate metabolic process +GO:0019640,glucuronate catabolic process to xylulose 5-phosphate +GO:0019673,GDP-mannose metabolic process +GO:0019674,NAD metabolic process +GO:0019682,glyceraldehyde-3-phosphate metabolic process +GO:0019692,deoxyribose phosphate metabolic process +GO:0019693,ribose phosphate metabolic process +GO:0019695,choline metabolic process +GO:0019720,Mo-molybdopterin cofactor metabolic process +GO:0019722,calcium-mediated signaling +GO:0019724,B cell mediated immunity +GO:0019725,cellular homeostasis +GO:0019730,antimicrobial humoral response +GO:0019731,antibacterial humoral response +GO:0019732,antifungal humoral response +GO:0019740,nitrogen utilization +GO:0019742,pentacyclic triterpenoid metabolic process +GO:0019747,regulation of isoprenoid metabolic process +GO:0019748,secondary metabolic process +GO:0019751,polyol metabolic process +GO:0019752,carboxylic acid metabolic process +GO:0019755,one-carbon compound transport +GO:0019800,peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan +GO:0019805,quinolinate biosynthetic process +GO:0019827,stem cell population maintenance +GO:0019835,cytolysis +GO:0019836,hemolysis by symbiont of host erythrocytes +GO:0019852,L-ascorbic acid metabolic process +GO:0019853,L-ascorbic acid biosynthetic process +GO:0019856,pyrimidine nucleobase biosynthetic process +GO:0019858,cytosine metabolic process +GO:0019859,thymine metabolic process +GO:0019860,uracil metabolic process +GO:0019882,antigen processing and presentation +GO:0019883,antigen processing and presentation of endogenous antigen +GO:0019884,antigen processing and presentation of exogenous antigen +GO:0019885,antigen processing and presentation of endogenous peptide antigen via MHC class I +GO:0019886,antigen processing and presentation of exogenous peptide antigen via MHC class II +GO:0019896,axon transport of mitochondrion +GO:0019915,lipid storage +GO:0019918,"peptidyl-arginine methylation, to symmetrical-dimethyl arginine" +GO:0019919,"peptidyl-arginine methylation, to asymmetrical-dimethyl arginine" +GO:0019932,second-messenger-mediated signaling +GO:0019933,cAMP-mediated signaling +GO:0019934,cGMP-mediated signaling +GO:0019935,cyclic-nucleotide-mediated signaling +GO:0019941,modification-dependent protein catabolic process +GO:0019953,sexual reproduction +GO:0019985,translesion synthesis +GO:0020027,hemoglobin metabolic process +GO:0021510,spinal cord development +GO:0021511,spinal cord patterning +GO:0021513,spinal cord dorsal/ventral patterning +GO:0021514,ventral spinal cord interneuron differentiation +GO:0021515,cell differentiation in spinal cord +GO:0021516,dorsal spinal cord development +GO:0021517,ventral spinal cord development +GO:0021520,spinal cord motor neuron cell fate specification +GO:0021521,ventral spinal cord interneuron specification +GO:0021522,spinal cord motor neuron differentiation +GO:0021523,somatic motor neuron differentiation +GO:0021524,visceral motor neuron differentiation +GO:0021526,medial motor column neuron differentiation +GO:0021527,spinal cord association neuron differentiation +GO:0021529,spinal cord oligodendrocyte cell differentiation +GO:0021530,spinal cord oligodendrocyte cell fate specification +GO:0021532,neural tube patterning +GO:0021533,cell differentiation in hindbrain +GO:0021534,cell proliferation in hindbrain +GO:0021535,cell migration in hindbrain +GO:0021536,diencephalon development +GO:0021537,telencephalon development +GO:0021538,epithalamus development +GO:0021539,subthalamus development +GO:0021540,corpus callosum morphogenesis +GO:0021542,dentate gyrus development +GO:0021543,pallium development +GO:0021544,subpallium development +GO:0021545,cranial nerve development +GO:0021546,rhombomere development +GO:0021548,pons development +GO:0021549,cerebellum development +GO:0021550,medulla oblongata development +GO:0021551,central nervous system morphogenesis +GO:0021553,olfactory nerve development +GO:0021554,optic nerve development +GO:0021555,midbrain-hindbrain boundary morphogenesis +GO:0021557,oculomotor nerve development +GO:0021558,trochlear nerve development +GO:0021559,trigeminal nerve development +GO:0021561,facial nerve development +GO:0021562,vestibulocochlear nerve development +GO:0021563,glossopharyngeal nerve development +GO:0021564,vagus nerve development +GO:0021568,rhombomere 2 development +GO:0021569,rhombomere 3 development +GO:0021570,rhombomere 4 development +GO:0021571,rhombomere 5 development +GO:0021575,hindbrain morphogenesis +GO:0021577,hindbrain structural organization +GO:0021578,hindbrain maturation +GO:0021586,pons maturation +GO:0021587,cerebellum morphogenesis +GO:0021589,cerebellum structural organization +GO:0021590,cerebellum maturation +GO:0021591,ventricular system development +GO:0021592,fourth ventricle development +GO:0021593,rhombomere morphogenesis +GO:0021602,cranial nerve morphogenesis +GO:0021603,cranial nerve formation +GO:0021604,cranial nerve structural organization +GO:0021610,facial nerve morphogenesis +GO:0021612,facial nerve structural organization +GO:0021615,glossopharyngeal nerve morphogenesis +GO:0021622,oculomotor nerve morphogenesis +GO:0021623,oculomotor nerve formation +GO:0021626,central nervous system maturation +GO:0021631,optic nerve morphogenesis +GO:0021633,optic nerve structural organization +GO:0021636,trigeminal nerve morphogenesis +GO:0021637,trigeminal nerve structural organization +GO:0021644,vagus nerve morphogenesis +GO:0021648,vestibulocochlear nerve morphogenesis +GO:0021650,vestibulocochlear nerve formation +GO:0021658,rhombomere 3 morphogenesis +GO:0021670,lateral ventricle development +GO:0021675,nerve development +GO:0021678,third ventricle development +GO:0021679,cerebellar molecular layer development +GO:0021680,cerebellar Purkinje cell layer development +GO:0021681,cerebellar granular layer development +GO:0021683,cerebellar granular layer morphogenesis +GO:0021684,cerebellar granular layer formation +GO:0021691,cerebellar Purkinje cell layer maturation +GO:0021692,cerebellar Purkinje cell layer morphogenesis +GO:0021693,cerebellar Purkinje cell layer structural organization +GO:0021694,cerebellar Purkinje cell layer formation +GO:0021695,cerebellar cortex development +GO:0021696,cerebellar cortex morphogenesis +GO:0021697,cerebellar cortex formation +GO:0021698,cerebellar cortex structural organization +GO:0021699,cerebellar cortex maturation +GO:0021700,developmental maturation +GO:0021702,cerebellar Purkinje cell differentiation +GO:0021707,cerebellar granule cell differentiation +GO:0021718,superior olivary nucleus development +GO:0021722,superior olivary nucleus maturation +GO:0021730,trigeminal sensory nucleus development +GO:0021740,principal sensory nucleus of trigeminal nerve development +GO:0021747,cochlear nucleus development +GO:0021750,vestibular nucleus development +GO:0021754,facial nucleus development +GO:0021756,striatum development +GO:0021759,globus pallidus development +GO:0021761,limbic system development +GO:0021762,substantia nigra development +GO:0021764,amygdala development +GO:0021766,hippocampus development +GO:0021769,orbitofrontal cortex development +GO:0021772,olfactory bulb development +GO:0021773,striatal medium spiny neuron differentiation +GO:0021775,smoothened signaling pathway involved in ventral spinal cord interneuron specification +GO:0021776,smoothened signaling pathway involved in spinal cord motor neuron cell fate specification +GO:0021778,oligodendrocyte cell fate specification +GO:0021779,oligodendrocyte cell fate commitment +GO:0021780,glial cell fate specification +GO:0021781,glial cell fate commitment +GO:0021782,glial cell development +GO:0021783,preganglionic parasympathetic fiber development +GO:0021784,postganglionic parasympathetic fiber development +GO:0021785,branchiomotor neuron axon guidance +GO:0021794,thalamus development +GO:0021795,cerebral cortex cell migration +GO:0021796,cerebral cortex regionalization +GO:0021797,forebrain anterior/posterior pattern specification +GO:0021798,forebrain dorsal/ventral pattern formation +GO:0021799,cerebral cortex radially oriented cell migration +GO:0021800,cerebral cortex tangential migration +GO:0021801,cerebral cortex radial glia guided migration +GO:0021812,neuronal-glial interaction involved in cerebral cortex radial glia guided migration +GO:0021814,cell motility involved in cerebral cortex radial glia guided migration +GO:0021815,modulation of microtubule cytoskeleton involved in cerebral cortex radial glia guided migration +GO:0021816,extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration +GO:0021819,layer formation in cerebral cortex +GO:0021823,cerebral cortex tangential migration using cell-cell interactions +GO:0021824,cerebral cortex tangential migration using cell-axon interactions +GO:0021825,substrate-dependent cerebral cortex tangential migration +GO:0021826,substrate-independent telencephalic tangential migration +GO:0021827,postnatal olfactory bulb interneuron migration +GO:0021828,gonadotrophin-releasing hormone neuronal migration to the hypothalamus +GO:0021830,interneuron migration from the subpallium to the cortex +GO:0021831,embryonic olfactory bulb interneuron precursor migration +GO:0021836,chemorepulsion involved in postnatal olfactory bulb interneuron migration +GO:0021840,directional guidance of interneurons involved in migration from the subpallium to the cortex +GO:0021842,chemorepulsion involved in interneuron migration from the subpallium to the cortex +GO:0021843,substrate-independent telencephalic tangential interneuron migration +GO:0021846,cell proliferation in forebrain +GO:0021847,ventricular zone neuroblast division +GO:0021849,neuroblast division in subventricular zone +GO:0021853,cerebral cortex GABAergic interneuron migration +GO:0021854,hypothalamus development +GO:0021855,hypothalamus cell migration +GO:0021856,hypothalamic tangential migration using cell-axon interactions +GO:0021859,pyramidal neuron differentiation +GO:0021860,pyramidal neuron development +GO:0021861,forebrain radial glial cell differentiation +GO:0021869,forebrain ventricular zone progenitor cell division +GO:0021871,forebrain regionalization +GO:0021872,forebrain generation of neurons +GO:0021873,forebrain neuroblast division +GO:0021877,forebrain neuron fate commitment +GO:0021879,forebrain neuron differentiation +GO:0021882,regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment +GO:0021884,forebrain neuron development +GO:0021885,forebrain cell migration +GO:0021886,hypothalamus gonadotrophin-releasing hormone neuron differentiation +GO:0021888,hypothalamus gonadotrophin-releasing hormone neuron development +GO:0021889,olfactory bulb interneuron differentiation +GO:0021891,olfactory bulb interneuron development +GO:0021892,cerebral cortex GABAergic interneuron differentiation +GO:0021893,cerebral cortex GABAergic interneuron fate commitment +GO:0021894,cerebral cortex GABAergic interneuron development +GO:0021895,cerebral cortex neuron differentiation +GO:0021896,forebrain astrocyte differentiation +GO:0021897,forebrain astrocyte development +GO:0021898,commitment of multipotent stem cells to neuronal lineage in forebrain +GO:0021902,commitment of neuronal cell to specific neuron type in forebrain +GO:0021903,rostrocaudal neural tube patterning +GO:0021904,dorsal/ventral neural tube patterning +GO:0021910,smoothened signaling pathway involved in ventral spinal cord patterning +GO:0021912,regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification +GO:0021913,regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification +GO:0021914,negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning +GO:0021915,neural tube development +GO:0021924,cell proliferation in external granule layer +GO:0021930,cerebellar granule cell precursor proliferation +GO:0021932,hindbrain radial glia guided cell migration +GO:0021934,hindbrain tangential cell migration +GO:0021936,regulation of cerebellar granule cell precursor proliferation +GO:0021937,cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation +GO:0021938,smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation +GO:0021940,positive regulation of cerebellar granule cell precursor proliferation +GO:0021941,negative regulation of cerebellar granule cell precursor proliferation +GO:0021942,radial glia guided migration of Purkinje cell +GO:0021943,formation of radial glial scaffolds +GO:0021952,central nervous system projection neuron axonogenesis +GO:0021953,central nervous system neuron differentiation +GO:0021954,central nervous system neuron development +GO:0021955,central nervous system neuron axonogenesis +GO:0021957,corticospinal tract morphogenesis +GO:0021960,anterior commissure morphogenesis +GO:0021965,spinal cord ventral commissure morphogenesis +GO:0021966,corticospinal neuron axon guidance +GO:0021978,telencephalon regionalization +GO:0021979,hypothalamus cell differentiation +GO:0021983,pituitary gland development +GO:0021984,adenohypophysis development +GO:0021985,neurohypophysis development +GO:0021986,habenula development +GO:0021987,cerebral cortex development +GO:0021988,olfactory lobe development +GO:0021997,neural plate axis specification +GO:0021999,neural plate anterior/posterior regionalization +GO:0022007,convergent extension involved in neural plate elongation +GO:0022009,central nervous system vasculogenesis +GO:0022010,central nervous system myelination +GO:0022011,myelination in peripheral nervous system +GO:0022027,interkinetic nuclear migration +GO:0022028,tangential migration from the subventricular zone to the olfactory bulb +GO:0022029,telencephalon cell migration +GO:0022030,telencephalon glial cell migration +GO:0022037,metencephalon development +GO:0022038,corpus callosum development +GO:0022400,regulation of rhodopsin mediated signaling pathway +GO:0022401,negative adaptation of signaling pathway +GO:0022404,molting cycle process +GO:0022405,hair cycle process +GO:0022406,membrane docking +GO:0022407,regulation of cell-cell adhesion +GO:0022408,negative regulation of cell-cell adhesion +GO:0022409,positive regulation of cell-cell adhesion +GO:0022410,circadian sleep/wake cycle process +GO:0022411,cellular component disassembly +GO:0022412,cellular process involved in reproduction in multicellular organism +GO:0022417,protein maturation by protein folding +GO:0022600,digestive system process +GO:0022601,menstrual cycle phase +GO:0022602,ovulation cycle process +GO:0022603,regulation of anatomical structure morphogenesis +GO:0022604,regulation of cell morphogenesis +GO:0022605,oogenesis stage +GO:0022612,gland morphogenesis +GO:0022613,ribonucleoprotein complex biogenesis +GO:0022614,membrane to membrane docking +GO:0022615,protein to membrane docking +GO:0022616,DNA strand elongation +GO:0022617,extracellular matrix disassembly +GO:0022618,ribonucleoprotein complex assembly +GO:0022898,regulation of transmembrane transporter activity +GO:0022900,electron transport chain +GO:0022904,respiratory electron transport chain +GO:0023014,signal transduction by protein phosphorylation +GO:0023019,signal transduction involved in regulation of gene expression +GO:0023021,termination of signal transduction +GO:0023035,CD40 signaling pathway +GO:0023041,neuronal signal transduction +GO:0023058,adaptation of signaling pathway +GO:0023061,signal release +GO:0030001,metal ion transport +GO:0030002,cellular anion homeostasis +GO:0030003,cellular cation homeostasis +GO:0030004,cellular monovalent inorganic cation homeostasis +GO:0030007,cellular potassium ion homeostasis +GO:0030010,establishment of cell polarity +GO:0030011,maintenance of cell polarity +GO:0030029,actin filament-based process +GO:0030031,cell projection assembly +GO:0030032,lamellipodium assembly +GO:0030033,microvillus assembly +GO:0030035,microspike assembly +GO:0030036,actin cytoskeleton organization +GO:0030038,contractile actin filament bundle assembly +GO:0030041,actin filament polymerization +GO:0030042,actin filament depolymerization +GO:0030046,parallel actin filament bundle assembly +GO:0030047,actin modification +GO:0030048,actin filament-based movement +GO:0030049,muscle filament sliding +GO:0030050,vesicle transport along actin filament +GO:0030070,insulin processing +GO:0030071,regulation of mitotic metaphase/anaphase transition +GO:0030072,peptide hormone secretion +GO:0030073,insulin secretion +GO:0030091,protein repair +GO:0030097,hemopoiesis +GO:0030098,lymphocyte differentiation +GO:0030099,myeloid cell differentiation +GO:0030100,regulation of endocytosis +GO:0030101,natural killer cell activation +GO:0030103,vasopressin secretion +GO:0030104,water homeostasis +GO:0030111,regulation of Wnt signaling pathway +GO:0030148,sphingolipid biosynthetic process +GO:0030149,sphingolipid catabolic process +GO:0030150,protein import into mitochondrial matrix +GO:0030155,regulation of cell adhesion +GO:0030157,pancreatic juice secretion +GO:0030162,regulation of proteolysis +GO:0030163,protein catabolic process +GO:0030166,proteoglycan biosynthetic process +GO:0030167,proteoglycan catabolic process +GO:0030168,platelet activation +GO:0030174,regulation of DNA-dependent DNA replication initiation +GO:0030177,positive regulation of Wnt signaling pathway +GO:0030178,negative regulation of Wnt signaling pathway +GO:0030183,B cell differentiation +GO:0030185,nitric oxide transport +GO:0030186,melatonin metabolic process +GO:0030187,melatonin biosynthetic process +GO:0030193,regulation of blood coagulation +GO:0030194,positive regulation of blood coagulation +GO:0030195,negative regulation of blood coagulation +GO:0030198,extracellular matrix organization +GO:0030199,collagen fibril organization +GO:0030200,heparan sulfate proteoglycan catabolic process +GO:0030201,heparan sulfate proteoglycan metabolic process +GO:0030202,heparin metabolic process +GO:0030203,glycosaminoglycan metabolic process +GO:0030204,chondroitin sulfate metabolic process +GO:0030205,dermatan sulfate metabolic process +GO:0030206,chondroitin sulfate biosynthetic process +GO:0030207,chondroitin sulfate catabolic process +GO:0030208,dermatan sulfate biosynthetic process +GO:0030210,heparin biosynthetic process +GO:0030212,hyaluronan metabolic process +GO:0030213,hyaluronan biosynthetic process +GO:0030214,hyaluronan catabolic process +GO:0030216,keratinocyte differentiation +GO:0030217,T cell differentiation +GO:0030218,erythrocyte differentiation +GO:0030219,megakaryocyte differentiation +GO:0030220,platelet formation +GO:0030221,basophil differentiation +GO:0030222,eosinophil differentiation +GO:0030223,neutrophil differentiation +GO:0030224,monocyte differentiation +GO:0030225,macrophage differentiation +GO:0030237,female sex determination +GO:0030238,male sex determination +GO:0030239,myofibril assembly +GO:0030240,skeletal muscle thin filament assembly +GO:0030241,skeletal muscle myosin thick filament assembly +GO:0030242,pexophagy +GO:0030252,growth hormone secretion +GO:0030258,lipid modification +GO:0030259,lipid glycosylation +GO:0030260,entry into host cell +GO:0030261,chromosome condensation +GO:0030262,apoptotic nuclear changes +GO:0030263,apoptotic chromosome condensation +GO:0030264,nuclear fragmentation involved in apoptotic nuclear change +GO:0030277,maintenance of gastrointestinal epithelium +GO:0030278,regulation of ossification +GO:0030279,negative regulation of ossification +GO:0030282,bone mineralization +GO:0030299,intestinal cholesterol absorption +GO:0030300,regulation of intestinal cholesterol absorption +GO:0030301,cholesterol transport +GO:0030307,positive regulation of cell growth +GO:0030308,negative regulation of cell growth +GO:0030309,poly-N-acetyllactosamine metabolic process +GO:0030311,poly-N-acetyllactosamine biosynthetic process +GO:0030316,osteoclast differentiation +GO:0030317,sperm motility +GO:0030318,melanocyte differentiation +GO:0030320,cellular monovalent inorganic anion homeostasis +GO:0030321,transepithelial chloride transport +GO:0030322,stabilization of membrane potential +GO:0030323,respiratory tube development +GO:0030324,lung development +GO:0030325,adrenal gland development +GO:0030326,embryonic limb morphogenesis +GO:0030327,prenylated protein catabolic process +GO:0030328,prenylcysteine catabolic process +GO:0030329,prenylcysteine metabolic process +GO:0030330,"DNA damage response, signal transduction by p53 class mediator" +GO:0030334,regulation of cell migration +GO:0030335,positive regulation of cell migration +GO:0030336,negative regulation of cell migration +GO:0030382,sperm mitochondrion organization +GO:0030388,"fructose 1,6-bisphosphate metabolic process" +GO:0030397,membrane disassembly +GO:0030422,production of siRNA involved in RNA interference +GO:0030423,targeting of mRNA for destruction involved in RNA interference +GO:0030431,sleep +GO:0030432,peristalsis +GO:0030433,ER-associated ubiquitin-dependent protein catabolic process +GO:0030449,regulation of complement activation +GO:0030450,"regulation of complement activation, classical pathway" +GO:0030451,"regulation of complement activation, alternative pathway" +GO:0030488,tRNA methylation +GO:0030490,maturation of SSU-rRNA +GO:0030497,fatty acid elongation +GO:0030500,regulation of bone mineralization +GO:0030501,positive regulation of bone mineralization +GO:0030502,negative regulation of bone mineralization +GO:0030505,inorganic diphosphate transport +GO:0030509,BMP signaling pathway +GO:0030510,regulation of BMP signaling pathway +GO:0030511,positive regulation of transforming growth factor beta receptor signaling pathway +GO:0030512,negative regulation of transforming growth factor beta receptor signaling pathway +GO:0030513,positive regulation of BMP signaling pathway +GO:0030514,negative regulation of BMP signaling pathway +GO:0030516,regulation of axon extension +GO:0030517,negative regulation of axon extension +GO:0030518,intracellular steroid hormone receptor signaling pathway +GO:0030520,intracellular estrogen receptor signaling pathway +GO:0030521,androgen receptor signaling pathway +GO:0030522,intracellular receptor signaling pathway +GO:0030534,adult behavior +GO:0030538,embryonic genitalia morphogenesis +GO:0030539,male genitalia development +GO:0030540,female genitalia development +GO:0030573,bile acid catabolic process +GO:0030574,collagen catabolic process +GO:0030575,nuclear body organization +GO:0030576,Cajal body organization +GO:0030578,PML body organization +GO:0030579,ubiquitin-dependent SMAD protein catabolic process +GO:0030581,symbiont intracellular protein transport in host +GO:0030593,neutrophil chemotaxis +GO:0030595,leukocyte chemotaxis +GO:0030638,polyketide metabolic process +GO:0030641,regulation of cellular pH +GO:0030643,cellular phosphate ion homeostasis +GO:0030644,cellular chloride ion homeostasis +GO:0030647,aminoglycoside antibiotic metabolic process +GO:0030656,regulation of vitamin metabolic process +GO:0030705,cytoskeleton-dependent intracellular transport +GO:0030718,germ-line stem cell population maintenance +GO:0030719,P granule organization +GO:0030728,ovulation +GO:0030730,sequestering of triglyceride +GO:0030799,regulation of cyclic nucleotide metabolic process +GO:0030800,negative regulation of cyclic nucleotide metabolic process +GO:0030801,positive regulation of cyclic nucleotide metabolic process +GO:0030802,regulation of cyclic nucleotide biosynthetic process +GO:0030803,negative regulation of cyclic nucleotide biosynthetic process +GO:0030804,positive regulation of cyclic nucleotide biosynthetic process +GO:0030805,regulation of cyclic nucleotide catabolic process +GO:0030806,negative regulation of cyclic nucleotide catabolic process +GO:0030807,positive regulation of cyclic nucleotide catabolic process +GO:0030808,regulation of nucleotide biosynthetic process +GO:0030809,negative regulation of nucleotide biosynthetic process +GO:0030810,positive regulation of nucleotide biosynthetic process +GO:0030811,regulation of nucleotide catabolic process +GO:0030812,negative regulation of nucleotide catabolic process +GO:0030813,positive regulation of nucleotide catabolic process +GO:0030814,regulation of cAMP metabolic process +GO:0030815,negative regulation of cAMP metabolic process +GO:0030816,positive regulation of cAMP metabolic process +GO:0030817,regulation of cAMP biosynthetic process +GO:0030818,negative regulation of cAMP biosynthetic process +GO:0030819,positive regulation of cAMP biosynthetic process +GO:0030820,regulation of cAMP catabolic process +GO:0030821,negative regulation of cAMP catabolic process +GO:0030822,positive regulation of cAMP catabolic process +GO:0030823,regulation of cGMP metabolic process +GO:0030824,negative regulation of cGMP metabolic process +GO:0030825,positive regulation of cGMP metabolic process +GO:0030826,regulation of cGMP biosynthetic process +GO:0030827,negative regulation of cGMP biosynthetic process +GO:0030828,positive regulation of cGMP biosynthetic process +GO:0030832,regulation of actin filament length +GO:0030833,regulation of actin filament polymerization +GO:0030834,regulation of actin filament depolymerization +GO:0030835,negative regulation of actin filament depolymerization +GO:0030836,positive regulation of actin filament depolymerization +GO:0030837,negative regulation of actin filament polymerization +GO:0030838,positive regulation of actin filament polymerization +GO:0030850,prostate gland development +GO:0030851,granulocyte differentiation +GO:0030852,regulation of granulocyte differentiation +GO:0030853,negative regulation of granulocyte differentiation +GO:0030854,positive regulation of granulocyte differentiation +GO:0030855,epithelial cell differentiation +GO:0030856,regulation of epithelial cell differentiation +GO:0030857,negative regulation of epithelial cell differentiation +GO:0030858,positive regulation of epithelial cell differentiation +GO:0030859,polarized epithelial cell differentiation +GO:0030860,regulation of polarized epithelial cell differentiation +GO:0030862,positive regulation of polarized epithelial cell differentiation +GO:0030865,cortical cytoskeleton organization +GO:0030866,cortical actin cytoskeleton organization +GO:0030878,thyroid gland development +GO:0030879,mammary gland development +GO:0030885,regulation of myeloid dendritic cell activation +GO:0030886,negative regulation of myeloid dendritic cell activation +GO:0030887,positive regulation of myeloid dendritic cell activation +GO:0030888,regulation of B cell proliferation +GO:0030889,negative regulation of B cell proliferation +GO:0030890,positive regulation of B cell proliferation +GO:0030900,forebrain development +GO:0030901,midbrain development +GO:0030902,hindbrain development +GO:0030903,notochord development +GO:0030908,protein splicing +GO:0030910,olfactory placode formation +GO:0030913,paranodal junction assembly +GO:0030916,otic vesicle formation +GO:0030917,midbrain-hindbrain boundary development +GO:0030920,peptidyl-serine acetylation +GO:0030947,regulation of vascular endothelial growth factor receptor signaling pathway +GO:0030948,negative regulation of vascular endothelial growth factor receptor signaling pathway +GO:0030949,positive regulation of vascular endothelial growth factor receptor signaling pathway +GO:0030950,establishment or maintenance of actin cytoskeleton polarity +GO:0030951,establishment or maintenance of microtubule cytoskeleton polarity +GO:0030952,establishment or maintenance of cytoskeleton polarity +GO:0030953,astral microtubule organization +GO:0030968,endoplasmic reticulum unfolded protein response +GO:0030970,"retrograde protein transport, ER to cytosol" +GO:0030997,regulation of centriole-centriole cohesion +GO:0031000,response to caffeine +GO:0031016,pancreas development +GO:0031017,exocrine pancreas development +GO:0031018,endocrine pancreas development +GO:0031022,nuclear migration along microfilament +GO:0031023,microtubule organizing center organization +GO:0031032,actomyosin structure organization +GO:0031033,myosin filament organization +GO:0031034,myosin filament assembly +GO:0031047,gene silencing by RNA +GO:0031049,programmed DNA elimination +GO:0031050,dsRNA fragmentation +GO:0031052,chromosome breakage +GO:0031053,primary miRNA processing +GO:0031054,pre-miRNA processing +GO:0031055,chromatin remodeling at centromere +GO:0031056,regulation of histone modification +GO:0031057,negative regulation of histone modification +GO:0031058,positive regulation of histone modification +GO:0031060,regulation of histone methylation +GO:0031061,negative regulation of histone methylation +GO:0031062,positive regulation of histone methylation +GO:0031063,regulation of histone deacetylation +GO:0031064,negative regulation of histone deacetylation +GO:0031065,positive regulation of histone deacetylation +GO:0031069,hair follicle morphogenesis +GO:0031076,embryonic camera-type eye development +GO:0031077,post-embryonic camera-type eye development +GO:0031086,"nuclear-transcribed mRNA catabolic process, deadenylation-independent decay" +GO:0031087,deadenylation-independent decapping of nuclear-transcribed mRNA +GO:0031098,stress-activated protein kinase signaling cascade +GO:0031099,regeneration +GO:0031100,organ regeneration +GO:0031102,neuron projection regeneration +GO:0031103,axon regeneration +GO:0031104,dendrite regeneration +GO:0031109,microtubule polymerization or depolymerization +GO:0031110,regulation of microtubule polymerization or depolymerization +GO:0031111,negative regulation of microtubule polymerization or depolymerization +GO:0031112,positive regulation of microtubule polymerization or depolymerization +GO:0031113,regulation of microtubule polymerization +GO:0031114,regulation of microtubule depolymerization +GO:0031115,negative regulation of microtubule polymerization +GO:0031116,positive regulation of microtubule polymerization +GO:0031117,positive regulation of microtubule depolymerization +GO:0031118,rRNA pseudouridine synthesis +GO:0031119,tRNA pseudouridine synthesis +GO:0031122,cytoplasmic microtubule organization +GO:0031123,RNA 3'-end processing +GO:0031124,mRNA 3'-end processing +GO:0031125,rRNA 3'-end processing +GO:0031126,snoRNA 3'-end processing +GO:0031128,developmental induction +GO:0031133,regulation of axon diameter +GO:0031134,sister chromatid biorientation +GO:0031145,anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process +GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process +GO:0031163,metallo-sulfur cluster assembly +GO:0031167,rRNA methylation +GO:0031175,neuron projection development +GO:0031179,peptide modification +GO:0031214,biomineral tissue development +GO:0031223,auditory behavior +GO:0031247,actin rod assembly +GO:0031268,pseudopodium organization +GO:0031269,pseudopodium assembly +GO:0031272,regulation of pseudopodium assembly +GO:0031274,positive regulation of pseudopodium assembly +GO:0031279,regulation of cyclase activity +GO:0031280,negative regulation of cyclase activity +GO:0031281,positive regulation of cyclase activity +GO:0031282,regulation of guanylate cyclase activity +GO:0031283,negative regulation of guanylate cyclase activity +GO:0031284,positive regulation of guanylate cyclase activity +GO:0031290,retinal ganglion cell axon guidance +GO:0031293,membrane protein intracellular domain proteolysis +GO:0031294,lymphocyte costimulation +GO:0031295,T cell costimulation +GO:0031296,B cell costimulation +GO:0031297,replication fork processing +GO:0031329,regulation of cellular catabolic process +GO:0031330,negative regulation of cellular catabolic process +GO:0031331,positive regulation of cellular catabolic process +GO:0031333,negative regulation of protein complex assembly +GO:0031334,positive regulation of protein complex assembly +GO:0031335,regulation of sulfur amino acid metabolic process +GO:0031338,regulation of vesicle fusion +GO:0031339,negative regulation of vesicle fusion +GO:0031340,positive regulation of vesicle fusion +GO:0031341,regulation of cell killing +GO:0031342,negative regulation of cell killing +GO:0031343,positive regulation of cell killing +GO:0031344,regulation of cell projection organization +GO:0031345,negative regulation of cell projection organization +GO:0031346,positive regulation of cell projection organization +GO:0031347,regulation of defense response +GO:0031348,negative regulation of defense response +GO:0031349,positive regulation of defense response +GO:0031365,N-terminal protein amino acid modification +GO:0031392,regulation of prostaglandin biosynthetic process +GO:0031393,negative regulation of prostaglandin biosynthetic process +GO:0031394,positive regulation of prostaglandin biosynthetic process +GO:0031396,regulation of protein ubiquitination +GO:0031397,negative regulation of protein ubiquitination +GO:0031398,positive regulation of protein ubiquitination +GO:0031400,negative regulation of protein modification process +GO:0031424,keratinization +GO:0031427,response to methotrexate +GO:0031437,regulation of mRNA cleavage +GO:0031440,regulation of mRNA 3'-end processing +GO:0031441,negative regulation of mRNA 3'-end processing +GO:0031442,positive regulation of mRNA 3'-end processing +GO:0031444,slow-twitch skeletal muscle fiber contraction +GO:0031455,glycine betaine metabolic process +GO:0031456,glycine betaine biosynthetic process +GO:0031468,nuclear envelope reassembly +GO:0031497,chromatin assembly +GO:0031498,chromatin disassembly +GO:0031503,protein complex localization +GO:0031506,cell wall glycoprotein biosynthetic process +GO:0031507,heterochromatin assembly +GO:0031508,pericentric heterochromatin assembly +GO:0031529,ruffle organization +GO:0031532,actin cytoskeleton reorganization +GO:0031536,positive regulation of exit from mitosis +GO:0031547,brain-derived neurotrophic factor receptor signaling pathway +GO:0031570,DNA integrity checkpoint +GO:0031571,mitotic G1 DNA damage checkpoint +GO:0031572,G2 DNA damage checkpoint +GO:0031573,intra-S DNA damage checkpoint +GO:0031577,spindle checkpoint +GO:0031579,membrane raft organization +GO:0031580,membrane raft distribution +GO:0031581,hemidesmosome assembly +GO:0031584,activation of phospholipase D activity +GO:0031585,"regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity" +GO:0031587,"positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity" +GO:0031589,cell-substrate adhesion +GO:0031590,wybutosine metabolic process +GO:0031591,wybutosine biosynthetic process +GO:0031620,regulation of fever generation +GO:0031622,positive regulation of fever generation +GO:0031623,receptor internalization +GO:0031627,telomeric loop formation +GO:0031629,synaptic vesicle fusion to presynaptic active zone membrane +GO:0031630,regulation of synaptic vesicle fusion to presynaptic membrane +GO:0031635,adenylate cyclase-inhibiting opioid receptor signaling pathway +GO:0031638,zymogen activation +GO:0031639,plasminogen activation +GO:0031640,killing of cells of other organism +GO:0031641,regulation of myelination +GO:0031642,negative regulation of myelination +GO:0031643,positive regulation of myelination +GO:0031644,regulation of neurological system process +GO:0031645,negative regulation of neurological system process +GO:0031646,positive regulation of neurological system process +GO:0031647,regulation of protein stability +GO:0031648,protein destabilization +GO:0031649,heat generation +GO:0031650,regulation of heat generation +GO:0031652,positive regulation of heat generation +GO:0031657,regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle +GO:0031659,positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle +GO:0031663,lipopolysaccharide-mediated signaling pathway +GO:0031664,regulation of lipopolysaccharide-mediated signaling pathway +GO:0031665,negative regulation of lipopolysaccharide-mediated signaling pathway +GO:0031666,positive regulation of lipopolysaccharide-mediated signaling pathway +GO:0031667,response to nutrient levels +GO:0031668,cellular response to extracellular stimulus +GO:0031669,cellular response to nutrient levels +GO:0031670,cellular response to nutrient +GO:0031848,protection from non-homologous end joining at telomere +GO:0031860,telomeric 3' overhang formation +GO:0031914,negative regulation of synaptic plasticity +GO:0031915,positive regulation of synaptic plasticity +GO:0031929,TOR signaling +GO:0031935,regulation of chromatin silencing +GO:0031936,negative regulation of chromatin silencing +GO:0031937,positive regulation of chromatin silencing +GO:0031943,regulation of glucocorticoid metabolic process +GO:0031944,negative regulation of glucocorticoid metabolic process +GO:0031946,regulation of glucocorticoid biosynthetic process +GO:0031947,negative regulation of glucocorticoid biosynthetic process +GO:0031952,regulation of protein autophosphorylation +GO:0031953,negative regulation of protein autophosphorylation +GO:0031954,positive regulation of protein autophosphorylation +GO:0031958,corticosteroid receptor signaling pathway +GO:0031959,mineralocorticoid receptor signaling pathway +GO:0031960,response to corticosteroid +GO:0031987,locomotion involved in locomotory behavior +GO:0031989,bombesin receptor signaling pathway +GO:0031990,mRNA export from nucleus in response to heat stress +GO:0031998,regulation of fatty acid beta-oxidation +GO:0031999,negative regulation of fatty acid beta-oxidation +GO:0032000,positive regulation of fatty acid beta-oxidation +GO:0032006,regulation of TOR signaling +GO:0032007,negative regulation of TOR signaling +GO:0032008,positive regulation of TOR signaling +GO:0032012,regulation of ARF protein signal transduction +GO:0032020,ISG15-protein conjugation +GO:0032024,positive regulation of insulin secretion +GO:0032025,response to cobalt ion +GO:0032026,response to magnesium ion +GO:0032042,mitochondrial DNA metabolic process +GO:0032048,cardiolipin metabolic process +GO:0032049,cardiolipin biosynthetic process +GO:0032053,ciliary basal body organization +GO:0032055,negative regulation of translation in response to stress +GO:0032056,positive regulation of translation in response to stress +GO:0032057,negative regulation of translational initiation in response to stress +GO:0032058,positive regulation of translational initiation in response to stress +GO:0032060,bleb assembly +GO:0032066,nucleolus to nucleoplasm transport +GO:0032069,regulation of nuclease activity +GO:0032070,regulation of deoxyribonuclease activity +GO:0032071,regulation of endodeoxyribonuclease activity +GO:0032074,negative regulation of nuclease activity +GO:0032075,positive regulation of nuclease activity +GO:0032077,positive regulation of deoxyribonuclease activity +GO:0032079,positive regulation of endodeoxyribonuclease activity +GO:0032088,negative regulation of NF-kappaB transcription factor activity +GO:0032091,negative regulation of protein binding +GO:0032092,positive regulation of protein binding +GO:0032094,response to food +GO:0032095,regulation of response to food +GO:0032096,negative regulation of response to food +GO:0032097,positive regulation of response to food +GO:0032098,regulation of appetite +GO:0032099,negative regulation of appetite +GO:0032100,positive regulation of appetite +GO:0032101,regulation of response to external stimulus +GO:0032102,negative regulation of response to external stimulus +GO:0032103,positive regulation of response to external stimulus +GO:0032104,regulation of response to extracellular stimulus +GO:0032105,negative regulation of response to extracellular stimulus +GO:0032106,positive regulation of response to extracellular stimulus +GO:0032107,regulation of response to nutrient levels +GO:0032108,negative regulation of response to nutrient levels +GO:0032109,positive regulation of response to nutrient levels +GO:0032119,sequestering of zinc ion +GO:0032147,activation of protein kinase activity +GO:0032148,activation of protein kinase B activity +GO:0032185,septin cytoskeleton organization +GO:0032196,transposition +GO:0032200,telomere organization +GO:0032201,telomere maintenance via semi-conservative replication +GO:0032202,telomere assembly +GO:0032204,regulation of telomere maintenance +GO:0032205,negative regulation of telomere maintenance +GO:0032206,positive regulation of telomere maintenance +GO:0032210,regulation of telomere maintenance via telomerase +GO:0032211,negative regulation of telomere maintenance via telomerase +GO:0032212,positive regulation of telomere maintenance via telomerase +GO:0032213,regulation of telomere maintenance via semi-conservative replication +GO:0032214,negative regulation of telomere maintenance via semi-conservative replication +GO:0032218,riboflavin transport +GO:0032222,"regulation of synaptic transmission, cholinergic" +GO:0032224,"positive regulation of synaptic transmission, cholinergic" +GO:0032225,"regulation of synaptic transmission, dopaminergic" +GO:0032226,"positive regulation of synaptic transmission, dopaminergic" +GO:0032227,"negative regulation of synaptic transmission, dopaminergic" +GO:0032228,"regulation of synaptic transmission, GABAergic" +GO:0032229,"negative regulation of synaptic transmission, GABAergic" +GO:0032230,"positive regulation of synaptic transmission, GABAergic" +GO:0032231,regulation of actin filament bundle assembly +GO:0032232,negative regulation of actin filament bundle assembly +GO:0032233,positive regulation of actin filament bundle assembly +GO:0032237,activation of store-operated calcium channel activity +GO:0032239,regulation of nucleobase-containing compound transport +GO:0032240,negative regulation of nucleobase-containing compound transport +GO:0032241,positive regulation of nucleobase-containing compound transport +GO:0032242,regulation of nucleoside transport +GO:0032252,secretory granule localization +GO:0032258,CVT pathway +GO:0032259,methylation +GO:0032261,purine nucleotide salvage +GO:0032262,pyrimidine nucleotide salvage +GO:0032264,IMP salvage +GO:0032271,regulation of protein polymerization +GO:0032272,negative regulation of protein polymerization +GO:0032273,positive regulation of protein polymerization +GO:0032274,gonadotropin secretion +GO:0032275,luteinizing hormone secretion +GO:0032276,regulation of gonadotropin secretion +GO:0032277,negative regulation of gonadotropin secretion +GO:0032278,positive regulation of gonadotropin secretion +GO:0032286,central nervous system myelin maintenance +GO:0032287,peripheral nervous system myelin maintenance +GO:0032288,myelin assembly +GO:0032289,central nervous system myelin formation +GO:0032290,peripheral nervous system myelin formation +GO:0032291,axon ensheathment in central nervous system +GO:0032292,peripheral nervous system axon ensheathment +GO:0032303,regulation of icosanoid secretion +GO:0032304,negative regulation of icosanoid secretion +GO:0032305,positive regulation of icosanoid secretion +GO:0032306,regulation of prostaglandin secretion +GO:0032308,positive regulation of prostaglandin secretion +GO:0032309,icosanoid secretion +GO:0032310,prostaglandin secretion +GO:0032324,molybdopterin cofactor biosynthetic process +GO:0032328,alanine transport +GO:0032329,serine transport +GO:0032330,regulation of chondrocyte differentiation +GO:0032331,negative regulation of chondrocyte differentiation +GO:0032332,positive regulation of chondrocyte differentiation +GO:0032341,aldosterone metabolic process +GO:0032342,aldosterone biosynthetic process +GO:0032344,regulation of aldosterone metabolic process +GO:0032345,negative regulation of aldosterone metabolic process +GO:0032346,positive regulation of aldosterone metabolic process +GO:0032347,regulation of aldosterone biosynthetic process +GO:0032348,negative regulation of aldosterone biosynthetic process +GO:0032349,positive regulation of aldosterone biosynthetic process +GO:0032350,regulation of hormone metabolic process +GO:0032351,negative regulation of hormone metabolic process +GO:0032352,positive regulation of hormone metabolic process +GO:0032353,negative regulation of hormone biosynthetic process +GO:0032354,response to follicle-stimulating hormone +GO:0032355,response to estradiol +GO:0032364,oxygen homeostasis +GO:0032365,intracellular lipid transport +GO:0032366,intracellular sterol transport +GO:0032367,intracellular cholesterol transport +GO:0032368,regulation of lipid transport +GO:0032369,negative regulation of lipid transport +GO:0032370,positive regulation of lipid transport +GO:0032371,regulation of sterol transport +GO:0032372,negative regulation of sterol transport +GO:0032373,positive regulation of sterol transport +GO:0032374,regulation of cholesterol transport +GO:0032375,negative regulation of cholesterol transport +GO:0032376,positive regulation of cholesterol transport +GO:0032377,regulation of intracellular lipid transport +GO:0032380,regulation of intracellular sterol transport +GO:0032383,regulation of intracellular cholesterol transport +GO:0032386,regulation of intracellular transport +GO:0032387,negative regulation of intracellular transport +GO:0032388,positive regulation of intracellular transport +GO:0032392,DNA geometric change +GO:0032400,melanosome localization +GO:0032401,establishment of melanosome localization +GO:0032402,melanosome transport +GO:0032409,regulation of transporter activity +GO:0032410,negative regulation of transporter activity +GO:0032411,positive regulation of transporter activity +GO:0032412,regulation of ion transmembrane transporter activity +GO:0032413,negative regulation of ion transmembrane transporter activity +GO:0032414,positive regulation of ion transmembrane transporter activity +GO:0032415,regulation of sodium:proton antiporter activity +GO:0032416,negative regulation of sodium:proton antiporter activity +GO:0032417,positive regulation of sodium:proton antiporter activity +GO:0032418,lysosome localization +GO:0032423,regulation of mismatch repair +GO:0032425,positive regulation of mismatch repair +GO:0032429,regulation of phospholipase A2 activity +GO:0032430,positive regulation of phospholipase A2 activity +GO:0032431,activation of phospholipase A2 activity +GO:0032434,regulation of proteasomal ubiquitin-dependent protein catabolic process +GO:0032435,negative regulation of proteasomal ubiquitin-dependent protein catabolic process +GO:0032436,positive regulation of proteasomal ubiquitin-dependent protein catabolic process +GO:0032438,melanosome organization +GO:0032439,endosome localization +GO:0032446,protein modification by small protein conjugation +GO:0032447,protein urmylation +GO:0032455,nerve growth factor processing +GO:0032456,endocytic recycling +GO:0032459,regulation of protein oligomerization +GO:0032460,negative regulation of protein oligomerization +GO:0032461,positive regulation of protein oligomerization +GO:0032462,regulation of protein homooligomerization +GO:0032463,negative regulation of protein homooligomerization +GO:0032464,positive regulation of protein homooligomerization +GO:0032465,regulation of cytokinesis +GO:0032466,negative regulation of cytokinesis +GO:0032467,positive regulation of cytokinesis +GO:0032469,endoplasmic reticulum calcium ion homeostasis +GO:0032470,positive regulation of endoplasmic reticulum calcium ion concentration +GO:0032471,negative regulation of endoplasmic reticulum calcium ion concentration +GO:0032472,Golgi calcium ion transport +GO:0032474,otolith morphogenesis +GO:0032479,regulation of type I interferon production +GO:0032480,negative regulation of type I interferon production +GO:0032481,positive regulation of type I interferon production +GO:0032482,Rab protein signal transduction +GO:0032483,regulation of Rab protein signal transduction +GO:0032484,Ral protein signal transduction +GO:0032485,regulation of Ral protein signal transduction +GO:0032486,Rap protein signal transduction +GO:0032487,regulation of Rap protein signal transduction +GO:0032488,Cdc42 protein signal transduction +GO:0032489,regulation of Cdc42 protein signal transduction +GO:0032490,detection of molecule of bacterial origin +GO:0032493,response to bacterial lipoprotein +GO:0032494,response to peptidoglycan +GO:0032495,response to muramyl dipeptide +GO:0032496,response to lipopolysaccharide +GO:0032497,detection of lipopolysaccharide +GO:0032499,detection of peptidoglycan +GO:0032504,multicellular organism reproduction +GO:0032506,cytokinetic process +GO:0032507,maintenance of protein location in cell +GO:0032508,DNA duplex unwinding +GO:0032509,endosome transport via multivesicular body sorting pathway +GO:0032510,endosome to lysosome transport via multivesicular body sorting pathway +GO:0032511,late endosome to vacuole transport via multivesicular body sorting pathway +GO:0032512,regulation of protein phosphatase type 2B activity +GO:0032513,negative regulation of protein phosphatase type 2B activity +GO:0032515,negative regulation of phosphoprotein phosphatase activity +GO:0032516,positive regulation of phosphoprotein phosphatase activity +GO:0032525,somite rostral/caudal axis specification +GO:0032526,response to retinoic acid +GO:0032527,protein exit from endoplasmic reticulum +GO:0032528,microvillus organization +GO:0032530,regulation of microvillus organization +GO:0032532,regulation of microvillus length +GO:0032534,regulation of microvillus assembly +GO:0032535,regulation of cellular component size +GO:0032536,regulation of cell projection size +GO:0032543,mitochondrial translation +GO:0032570,response to progesterone +GO:0032571,response to vitamin K +GO:0032594,protein transport within lipid bilayer +GO:0032596,protein transport into membrane raft +GO:0032602,chemokine production +GO:0032606,type I interferon production +GO:0032607,interferon-alpha production +GO:0032608,interferon-beta production +GO:0032609,interferon-gamma production +GO:0032611,interleukin-1 beta production +GO:0032612,interleukin-1 production +GO:0032613,interleukin-10 production +GO:0032615,interleukin-12 production +GO:0032616,interleukin-13 production +GO:0032620,interleukin-17 production +GO:0032621,interleukin-18 production +GO:0032623,interleukin-2 production +GO:0032633,interleukin-4 production +GO:0032635,interleukin-6 production +GO:0032637,interleukin-8 production +GO:0032640,tumor necrosis factor production +GO:0032641,lymphotoxin A production +GO:0032642,regulation of chemokine production +GO:0032645,regulation of granulocyte macrophage colony-stimulating factor production +GO:0032647,regulation of interferon-alpha production +GO:0032648,regulation of interferon-beta production +GO:0032649,regulation of interferon-gamma production +GO:0032650,regulation of interleukin-1 alpha production +GO:0032651,regulation of interleukin-1 beta production +GO:0032652,regulation of interleukin-1 production +GO:0032653,regulation of interleukin-10 production +GO:0032655,regulation of interleukin-12 production +GO:0032656,regulation of interleukin-13 production +GO:0032660,regulation of interleukin-17 production +GO:0032661,regulation of interleukin-18 production +GO:0032663,regulation of interleukin-2 production +GO:0032667,regulation of interleukin-23 production +GO:0032672,regulation of interleukin-3 production +GO:0032673,regulation of interleukin-4 production +GO:0032674,regulation of interleukin-5 production +GO:0032675,regulation of interleukin-6 production +GO:0032677,regulation of interleukin-8 production +GO:0032679,regulation of TRAIL production +GO:0032680,regulation of tumor necrosis factor production +GO:0032682,negative regulation of chemokine production +GO:0032687,negative regulation of interferon-alpha production +GO:0032688,negative regulation of interferon-beta production +GO:0032689,negative regulation of interferon-gamma production +GO:0032691,negative regulation of interleukin-1 beta production +GO:0032692,negative regulation of interleukin-1 production +GO:0032693,negative regulation of interleukin-10 production +GO:0032695,negative regulation of interleukin-12 production +GO:0032696,negative regulation of interleukin-13 production +GO:0032700,negative regulation of interleukin-17 production +GO:0032701,negative regulation of interleukin-18 production +GO:0032703,negative regulation of interleukin-2 production +GO:0032707,negative regulation of interleukin-23 production +GO:0032713,negative regulation of interleukin-4 production +GO:0032714,negative regulation of interleukin-5 production +GO:0032715,negative regulation of interleukin-6 production +GO:0032717,negative regulation of interleukin-8 production +GO:0032720,negative regulation of tumor necrosis factor production +GO:0032722,positive regulation of chemokine production +GO:0032725,positive regulation of granulocyte macrophage colony-stimulating factor production +GO:0032727,positive regulation of interferon-alpha production +GO:0032728,positive regulation of interferon-beta production +GO:0032729,positive regulation of interferon-gamma production +GO:0032730,positive regulation of interleukin-1 alpha production +GO:0032731,positive regulation of interleukin-1 beta production +GO:0032732,positive regulation of interleukin-1 production +GO:0032733,positive regulation of interleukin-10 production +GO:0032735,positive regulation of interleukin-12 production +GO:0032736,positive regulation of interleukin-13 production +GO:0032740,positive regulation of interleukin-17 production +GO:0032741,positive regulation of interleukin-18 production +GO:0032743,positive regulation of interleukin-2 production +GO:0032747,positive regulation of interleukin-23 production +GO:0032752,positive regulation of interleukin-3 production +GO:0032753,positive regulation of interleukin-4 production +GO:0032754,positive regulation of interleukin-5 production +GO:0032755,positive regulation of interleukin-6 production +GO:0032757,positive regulation of interleukin-8 production +GO:0032759,positive regulation of TRAIL production +GO:0032760,positive regulation of tumor necrosis factor production +GO:0032762,mast cell cytokine production +GO:0032763,regulation of mast cell cytokine production +GO:0032764,negative regulation of mast cell cytokine production +GO:0032765,positive regulation of mast cell cytokine production +GO:0032768,regulation of monooxygenase activity +GO:0032769,negative regulation of monooxygenase activity +GO:0032770,positive regulation of monooxygenase activity +GO:0032776,DNA methylation on cytosine +GO:0032780,negative regulation of ATPase activity +GO:0032781,positive regulation of ATPase activity +GO:0032782,bile acid secretion +GO:0032784,"regulation of DNA-templated transcription, elongation" +GO:0032785,"negative regulation of DNA-templated transcription, elongation" +GO:0032786,"positive regulation of DNA-templated transcription, elongation" +GO:0032787,monocarboxylic acid metabolic process +GO:0032790,ribosome disassembly +GO:0032792,negative regulation of CREB transcription factor activity +GO:0032793,positive regulation of CREB transcription factor activity +GO:0032796,uropod organization +GO:0032799,low-density lipoprotein receptor particle metabolic process +GO:0032800,receptor biosynthetic process +GO:0032801,receptor catabolic process +GO:0032803,regulation of low-density lipoprotein particle receptor catabolic process +GO:0032804,negative regulation of low-density lipoprotein particle receptor catabolic process +GO:0032805,positive regulation of low-density lipoprotein particle receptor catabolic process +GO:0032808,lacrimal gland development +GO:0032811,negative regulation of epinephrine secretion +GO:0032814,regulation of natural killer cell activation +GO:0032815,negative regulation of natural killer cell activation +GO:0032816,positive regulation of natural killer cell activation +GO:0032817,regulation of natural killer cell proliferation +GO:0032819,positive regulation of natural killer cell proliferation +GO:0032823,regulation of natural killer cell differentiation +GO:0032824,negative regulation of natural killer cell differentiation +GO:0032825,positive regulation of natural killer cell differentiation +GO:0032826,regulation of natural killer cell differentiation involved in immune response +GO:0032827,negative regulation of natural killer cell differentiation involved in immune response +GO:0032829,"regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation" +GO:0032831,"positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation" +GO:0032832,"regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response" +GO:0032834,"positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response" +GO:0032835,glomerulus development +GO:0032836,glomerular basement membrane development +GO:0032844,regulation of homeostatic process +GO:0032845,negative regulation of homeostatic process +GO:0032846,positive regulation of homeostatic process +GO:0032847,regulation of cellular pH reduction +GO:0032849,positive regulation of cellular pH reduction +GO:0032868,response to insulin +GO:0032869,cellular response to insulin stimulus +GO:0032870,cellular response to hormone stimulus +GO:0032872,regulation of stress-activated MAPK cascade +GO:0032873,negative regulation of stress-activated MAPK cascade +GO:0032874,positive regulation of stress-activated MAPK cascade +GO:0032875,regulation of DNA endoreduplication +GO:0032876,negative regulation of DNA endoreduplication +GO:0032877,positive regulation of DNA endoreduplication +GO:0032878,regulation of establishment or maintenance of cell polarity +GO:0032880,regulation of protein localization +GO:0032881,regulation of polysaccharide metabolic process +GO:0032885,regulation of polysaccharide biosynthetic process +GO:0032886,regulation of microtubule-based process +GO:0032890,regulation of organic acid transport +GO:0032891,negative regulation of organic acid transport +GO:0032892,positive regulation of organic acid transport +GO:0032897,negative regulation of viral transcription +GO:0032898,neurotrophin production +GO:0032899,regulation of neurotrophin production +GO:0032902,nerve growth factor production +GO:0032908,regulation of transforming growth factor beta1 production +GO:0032909,regulation of transforming growth factor beta2 production +GO:0032910,regulation of transforming growth factor beta3 production +GO:0032911,negative regulation of transforming growth factor beta1 production +GO:0032912,negative regulation of transforming growth factor beta2 production +GO:0032914,positive regulation of transforming growth factor beta1 production +GO:0032915,positive regulation of transforming growth factor beta2 production +GO:0032916,positive regulation of transforming growth factor beta3 production +GO:0032922,circadian regulation of gene expression +GO:0032924,activin receptor signaling pathway +GO:0032925,regulation of activin receptor signaling pathway +GO:0032926,negative regulation of activin receptor signaling pathway +GO:0032927,positive regulation of activin receptor signaling pathway +GO:0032928,regulation of superoxide anion generation +GO:0032929,negative regulation of superoxide anion generation +GO:0032930,positive regulation of superoxide anion generation +GO:0032933,SREBP signaling pathway +GO:0032940,secretion by cell +GO:0032941,secretion by tissue +GO:0032943,mononuclear cell proliferation +GO:0032944,regulation of mononuclear cell proliferation +GO:0032945,negative regulation of mononuclear cell proliferation +GO:0032946,positive regulation of mononuclear cell proliferation +GO:0032956,regulation of actin cytoskeleton organization +GO:0032957,inositol trisphosphate metabolic process +GO:0032958,inositol phosphate biosynthetic process +GO:0032959,inositol trisphosphate biosynthetic process +GO:0032960,regulation of inositol trisphosphate biosynthetic process +GO:0032962,positive regulation of inositol trisphosphate biosynthetic process +GO:0032963,collagen metabolic process +GO:0032964,collagen biosynthetic process +GO:0032965,regulation of collagen biosynthetic process +GO:0032966,negative regulation of collagen biosynthetic process +GO:0032967,positive regulation of collagen biosynthetic process +GO:0032968,positive regulation of transcription elongation from RNA polymerase II promoter +GO:0032970,regulation of actin filament-based process +GO:0032971,regulation of muscle filament sliding +GO:0032972,regulation of muscle filament sliding speed +GO:0032981,mitochondrial respiratory chain complex I assembly +GO:0032984,macromolecular complex disassembly +GO:0032986,protein-DNA complex disassembly +GO:0032988,ribonucleoprotein complex disassembly +GO:0032990,cell part morphogenesis +GO:0033002,muscle cell proliferation +GO:0033003,regulation of mast cell activation +GO:0033004,negative regulation of mast cell activation +GO:0033005,positive regulation of mast cell activation +GO:0033006,regulation of mast cell activation involved in immune response +GO:0033007,negative regulation of mast cell activation involved in immune response +GO:0033008,positive regulation of mast cell activation involved in immune response +GO:0033013,tetrapyrrole metabolic process +GO:0033014,tetrapyrrole biosynthetic process +GO:0033015,tetrapyrrole catabolic process +GO:0033025,regulation of mast cell apoptotic process +GO:0033026,negative regulation of mast cell apoptotic process +GO:0033028,myeloid cell apoptotic process +GO:0033029,regulation of neutrophil apoptotic process +GO:0033030,negative regulation of neutrophil apoptotic process +GO:0033031,positive regulation of neutrophil apoptotic process +GO:0033032,regulation of myeloid cell apoptotic process +GO:0033033,negative regulation of myeloid cell apoptotic process +GO:0033034,positive regulation of myeloid cell apoptotic process +GO:0033044,regulation of chromosome organization +GO:0033045,regulation of sister chromatid segregation +GO:0033046,negative regulation of sister chromatid segregation +GO:0033047,regulation of mitotic sister chromatid segregation +GO:0033048,negative regulation of mitotic sister chromatid segregation +GO:0033057,multicellular organismal reproductive behavior +GO:0033058,directional locomotion +GO:0033059,cellular pigmentation +GO:0033076,isoquinoline alkaloid metabolic process +GO:0033077,T cell differentiation in thymus +GO:0033081,regulation of T cell differentiation in thymus +GO:0033083,regulation of immature T cell proliferation +GO:0033084,regulation of immature T cell proliferation in thymus +GO:0033085,negative regulation of T cell differentiation in thymus +GO:0033087,negative regulation of immature T cell proliferation +GO:0033088,negative regulation of immature T cell proliferation in thymus +GO:0033089,positive regulation of T cell differentiation in thymus +GO:0033091,positive regulation of immature T cell proliferation +GO:0033092,positive regulation of immature T cell proliferation in thymus +GO:0033108,mitochondrial respiratory chain complex assembly +GO:0033119,negative regulation of RNA splicing +GO:0033120,positive regulation of RNA splicing +GO:0033121,regulation of purine nucleotide catabolic process +GO:0033122,negative regulation of purine nucleotide catabolic process +GO:0033123,positive regulation of purine nucleotide catabolic process +GO:0033127,regulation of histone phosphorylation +GO:0033128,negative regulation of histone phosphorylation +GO:0033129,positive regulation of histone phosphorylation +GO:0033131,regulation of glucokinase activity +GO:0033132,negative regulation of glucokinase activity +GO:0033133,positive regulation of glucokinase activity +GO:0033135,regulation of peptidyl-serine phosphorylation +GO:0033136,serine phosphorylation of STAT3 protein +GO:0033137,negative regulation of peptidyl-serine phosphorylation +GO:0033138,positive regulation of peptidyl-serine phosphorylation +GO:0033139,regulation of peptidyl-serine phosphorylation of STAT protein +GO:0033141,positive regulation of peptidyl-serine phosphorylation of STAT protein +GO:0033143,regulation of intracellular steroid hormone receptor signaling pathway +GO:0033144,negative regulation of intracellular steroid hormone receptor signaling pathway +GO:0033145,positive regulation of intracellular steroid hormone receptor signaling pathway +GO:0033146,regulation of intracellular estrogen receptor signaling pathway +GO:0033147,negative regulation of intracellular estrogen receptor signaling pathway +GO:0033148,positive regulation of intracellular estrogen receptor signaling pathway +GO:0033151,V(D)J recombination +GO:0033152,immunoglobulin V(D)J recombination +GO:0033153,T cell receptor V(D)J recombination +GO:0033157,regulation of intracellular protein transport +GO:0033158,"regulation of protein import into nucleus, translocation" +GO:0033159,"negative regulation of protein import into nucleus, translocation" +GO:0033160,"positive regulation of protein import into nucleus, translocation" +GO:0033169,histone H3-K9 demethylation +GO:0033173,calcineurin-NFAT signaling cascade +GO:0033182,regulation of histone ubiquitination +GO:0033183,negative regulation of histone ubiquitination +GO:0033184,positive regulation of histone ubiquitination +GO:0033189,response to vitamin A +GO:0033194,response to hydroperoxide +GO:0033197,response to vitamin E +GO:0033198,response to ATP +GO:0033206,meiotic cytokinesis +GO:0033209,tumor necrosis factor-mediated signaling pathway +GO:0033210,leptin-mediated signaling pathway +GO:0033211,adiponectin-activated signaling pathway +GO:0033216,ferric iron import +GO:0033227,dsRNA transport +GO:0033233,regulation of protein sumoylation +GO:0033234,negative regulation of protein sumoylation +GO:0033235,positive regulation of protein sumoylation +GO:0033238,regulation of cellular amine metabolic process +GO:0033239,negative regulation of cellular amine metabolic process +GO:0033240,positive regulation of cellular amine metabolic process +GO:0033260,nuclear DNA replication +GO:0033262,regulation of nuclear cell cycle DNA replication +GO:0033273,response to vitamin +GO:0033275,actin-myosin filament sliding +GO:0033277,abortive mitotic cell cycle +GO:0033278,cell proliferation in midbrain +GO:0033280,response to vitamin D +GO:0033292,T-tubule organization +GO:0033299,secretion of lysosomal enzymes +GO:0033306,phytol metabolic process +GO:0033313,meiotic cell cycle checkpoint +GO:0033314,mitotic DNA replication checkpoint +GO:0033326,cerebrospinal fluid secretion +GO:0033327,Leydig cell differentiation +GO:0033341,regulation of collagen binding +GO:0033344,cholesterol efflux +GO:0033353,S-adenosylmethionine cycle +GO:0033363,secretory granule organization +GO:0033364,mast cell secretory granule organization +GO:0033365,protein localization to organelle +GO:0033383,geranyl diphosphate metabolic process +GO:0033384,geranyl diphosphate biosynthetic process +GO:0033387,putrescine biosynthetic process from ornithine +GO:0033483,gas homeostasis +GO:0033484,nitric oxide homeostasis +GO:0033489,cholesterol biosynthetic process via desmosterol +GO:0033490,cholesterol biosynthetic process via lathosterol +GO:0033500,carbohydrate homeostasis +GO:0033504,floor plate development +GO:0033505,floor plate morphogenesis +GO:0033512,L-lysine catabolic process to acetyl-CoA via saccharopine +GO:0033522,histone H2A ubiquitination +GO:0033523,histone H2B ubiquitination +GO:0033539,fatty acid beta-oxidation using acyl-CoA dehydrogenase +GO:0033540,fatty acid beta-oxidation using acyl-CoA oxidase +GO:0033555,multicellular organismal response to stress +GO:0033559,unsaturated fatty acid metabolic process +GO:0033561,regulation of water loss via skin +GO:0033563,dorsal/ventral axon guidance +GO:0033564,anterior/posterior axon guidance +GO:0033566,gamma-tubulin complex localization +GO:0033567,"DNA replication, Okazaki fragment processing" +GO:0033572,transferrin transport +GO:0033574,response to testosterone +GO:0033578,protein glycosylation in Golgi +GO:0033591,response to L-ascorbic acid +GO:0033594,response to hydroxyisoflavone +GO:0033595,response to genistein +GO:0033598,mammary gland epithelial cell proliferation +GO:0033599,regulation of mammary gland epithelial cell proliferation +GO:0033600,negative regulation of mammary gland epithelial cell proliferation +GO:0033601,positive regulation of mammary gland epithelial cell proliferation +GO:0033602,negative regulation of dopamine secretion +GO:0033603,positive regulation of dopamine secretion +GO:0033604,negative regulation of catecholamine secretion +GO:0033605,positive regulation of catecholamine secretion +GO:0033615,mitochondrial proton-transporting ATP synthase complex assembly +GO:0033617,mitochondrial respiratory chain complex IV assembly +GO:0033619,membrane protein proteolysis +GO:0033622,integrin activation +GO:0033623,regulation of integrin activation +GO:0033624,negative regulation of integrin activation +GO:0033625,positive regulation of integrin activation +GO:0033627,cell adhesion mediated by integrin +GO:0033628,regulation of cell adhesion mediated by integrin +GO:0033629,negative regulation of cell adhesion mediated by integrin +GO:0033630,positive regulation of cell adhesion mediated by integrin +GO:0033631,cell-cell adhesion mediated by integrin +GO:0033632,regulation of cell-cell adhesion mediated by integrin +GO:0033634,positive regulation of cell-cell adhesion mediated by integrin +GO:0033668,negative regulation by symbiont of host apoptotic process +GO:0033673,negative regulation of kinase activity +GO:0033674,positive regulation of kinase activity +GO:0033683,"nucleotide-excision repair, DNA incision" +GO:0033684,regulation of luteinizing hormone secretion +GO:0033685,negative regulation of luteinizing hormone secretion +GO:0033686,positive regulation of luteinizing hormone secretion +GO:0033687,osteoblast proliferation +GO:0033688,regulation of osteoblast proliferation +GO:0033689,negative regulation of osteoblast proliferation +GO:0033690,positive regulation of osteoblast proliferation +GO:0033692,cellular polysaccharide biosynthetic process +GO:0033693,neurofilament bundle assembly +GO:0033700,phospholipid efflux +GO:0033750,ribosome localization +GO:0033753,establishment of ribosome localization +GO:0033762,response to glucagon +GO:0033860,regulation of NAD(P)H oxidase activity +GO:0033861,negative regulation of NAD(P)H oxidase activity +GO:0033864,positive regulation of NAD(P)H oxidase activity +GO:0033865,nucleoside bisphosphate metabolic process +GO:0033866,nucleoside bisphosphate biosynthetic process +GO:0033869,nucleoside bisphosphate catabolic process +GO:0033875,ribonucleoside bisphosphate metabolic process +GO:0033962,cytoplasmic mRNA processing body assembly +GO:0033993,response to lipid +GO:0034014,response to triglyceride +GO:0034030,ribonucleoside bisphosphate biosynthetic process +GO:0034031,ribonucleoside bisphosphate catabolic process +GO:0034032,purine nucleoside bisphosphate metabolic process +GO:0034033,purine nucleoside bisphosphate biosynthetic process +GO:0034034,purine nucleoside bisphosphate catabolic process +GO:0034035,purine ribonucleoside bisphosphate metabolic process +GO:0034036,purine ribonucleoside bisphosphate biosynthetic process +GO:0034047,regulation of protein phosphatase type 2A activity +GO:0034048,negative regulation of protein phosphatase type 2A activity +GO:0034058,endosomal vesicle fusion +GO:0034059,response to anoxia +GO:0034063,stress granule assembly +GO:0034067,protein localization to Golgi apparatus +GO:0034080,CENP-A containing nucleosome assembly +GO:0034086,maintenance of sister chromatid cohesion +GO:0034088,maintenance of mitotic sister chromatid cohesion +GO:0034091,regulation of maintenance of sister chromatid cohesion +GO:0034092,negative regulation of maintenance of sister chromatid cohesion +GO:0034093,positive regulation of maintenance of sister chromatid cohesion +GO:0034097,response to cytokine +GO:0034101,erythrocyte homeostasis +GO:0034103,regulation of tissue remodeling +GO:0034104,negative regulation of tissue remodeling +GO:0034105,positive regulation of tissue remodeling +GO:0034109,homotypic cell-cell adhesion +GO:0034110,regulation of homotypic cell-cell adhesion +GO:0034111,negative regulation of homotypic cell-cell adhesion +GO:0034112,positive regulation of homotypic cell-cell adhesion +GO:0034113,heterotypic cell-cell adhesion +GO:0034114,regulation of heterotypic cell-cell adhesion +GO:0034115,negative regulation of heterotypic cell-cell adhesion +GO:0034116,positive regulation of heterotypic cell-cell adhesion +GO:0034121,regulation of toll-like receptor signaling pathway +GO:0034122,negative regulation of toll-like receptor signaling pathway +GO:0034123,positive regulation of toll-like receptor signaling pathway +GO:0034124,regulation of MyD88-dependent toll-like receptor signaling pathway +GO:0034134,toll-like receptor 2 signaling pathway +GO:0034135,regulation of toll-like receptor 2 signaling pathway +GO:0034136,negative regulation of toll-like receptor 2 signaling pathway +GO:0034137,positive regulation of toll-like receptor 2 signaling pathway +GO:0034138,toll-like receptor 3 signaling pathway +GO:0034139,regulation of toll-like receptor 3 signaling pathway +GO:0034140,negative regulation of toll-like receptor 3 signaling pathway +GO:0034141,positive regulation of toll-like receptor 3 signaling pathway +GO:0034142,toll-like receptor 4 signaling pathway +GO:0034143,regulation of toll-like receptor 4 signaling pathway +GO:0034144,negative regulation of toll-like receptor 4 signaling pathway +GO:0034145,positive regulation of toll-like receptor 4 signaling pathway +GO:0034146,toll-like receptor 5 signaling pathway +GO:0034154,toll-like receptor 7 signaling pathway +GO:0034162,toll-like receptor 9 signaling pathway +GO:0034163,regulation of toll-like receptor 9 signaling pathway +GO:0034165,positive regulation of toll-like receptor 9 signaling pathway +GO:0034166,toll-like receptor 10 signaling pathway +GO:0034182,regulation of maintenance of mitotic sister chromatid cohesion +GO:0034183,negative regulation of maintenance of mitotic sister chromatid cohesion +GO:0034184,positive regulation of maintenance of mitotic sister chromatid cohesion +GO:0034196,acylglycerol transport +GO:0034197,triglyceride transport +GO:0034198,cellular response to amino acid starvation +GO:0034199,activation of protein kinase A activity +GO:0034201,response to oleic acid +GO:0034204,lipid translocation +GO:0034214,protein hexamerization +GO:0034219,carbohydrate transmembrane transport +GO:0034220,ion transmembrane transport +GO:0034224,cellular response to zinc ion starvation +GO:0034227,tRNA thio-modification +GO:0034239,regulation of macrophage fusion +GO:0034241,positive regulation of macrophage fusion +GO:0034242,negative regulation of syncytium formation by plasma membrane fusion +GO:0034243,regulation of transcription elongation from RNA polymerase II promoter +GO:0034244,negative regulation of transcription elongation from RNA polymerase II promoter +GO:0034248,regulation of cellular amide metabolic process +GO:0034249,negative regulation of cellular amide metabolic process +GO:0034250,positive regulation of cellular amide metabolic process +GO:0034260,negative regulation of GTPase activity +GO:0034284,response to monosaccharide +GO:0034285,response to disaccharide +GO:0034287,detection of monosaccharide stimulus +GO:0034308,primary alcohol metabolic process +GO:0034310,primary alcohol catabolic process +GO:0034311,diol metabolic process +GO:0034312,diol biosynthetic process +GO:0034314,Arp2/3 complex-mediated actin nucleation +GO:0034315,regulation of Arp2/3 complex-mediated actin nucleation +GO:0034316,negative regulation of Arp2/3 complex-mediated actin nucleation +GO:0034329,cell junction assembly +GO:0034330,cell junction organization +GO:0034331,cell junction maintenance +GO:0034332,adherens junction organization +GO:0034333,adherens junction assembly +GO:0034334,adherens junction maintenance +GO:0034340,response to type I interferon +GO:0034341,response to interferon-gamma +GO:0034342,response to type III interferon +GO:0034344,regulation of type III interferon production +GO:0034349,glial cell apoptotic process +GO:0034350,regulation of glial cell apoptotic process +GO:0034351,negative regulation of glial cell apoptotic process +GO:0034354,'de novo' NAD biosynthetic process from tryptophan +GO:0034367,macromolecular complex remodeling +GO:0034368,protein-lipid complex remodeling +GO:0034369,plasma lipoprotein particle remodeling +GO:0034370,triglyceride-rich lipoprotein particle remodeling +GO:0034371,chylomicron remodeling +GO:0034372,very-low-density lipoprotein particle remodeling +GO:0034374,low-density lipoprotein particle remodeling +GO:0034375,high-density lipoprotein particle remodeling +GO:0034377,plasma lipoprotein particle assembly +GO:0034378,chylomicron assembly +GO:0034379,very-low-density lipoprotein particle assembly +GO:0034380,high-density lipoprotein particle assembly +GO:0034381,plasma lipoprotein particle clearance +GO:0034382,chylomicron remnant clearance +GO:0034383,low-density lipoprotein particle clearance +GO:0034384,high-density lipoprotein particle clearance +GO:0034389,lipid particle organization +GO:0034391,regulation of smooth muscle cell apoptotic process +GO:0034392,negative regulation of smooth muscle cell apoptotic process +GO:0034393,positive regulation of smooth muscle cell apoptotic process +GO:0034394,protein localization to cell surface +GO:0034395,regulation of transcription from RNA polymerase II promoter in response to iron +GO:0034397,telomere localization +GO:0034398,telomere tethering at nuclear periphery +GO:0034405,response to fluid shear stress +GO:0034414,"tRNA 3'-trailer cleavage, endonucleolytic" +GO:0034418,urate biosynthetic process +GO:0034421,post-translational protein acetylation +GO:0034427,"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'" +GO:0034433,steroid esterification +GO:0034434,sterol esterification +GO:0034435,cholesterol esterification +GO:0034436,glycoprotein transport +GO:0034440,lipid oxidation +GO:0034442,regulation of lipoprotein oxidation +GO:0034443,negative regulation of lipoprotein oxidation +GO:0034444,regulation of plasma lipoprotein particle oxidation +GO:0034445,negative regulation of plasma lipoprotein particle oxidation +GO:0034446,substrate adhesion-dependent cell spreading +GO:0034447,very-low-density lipoprotein particle clearance +GO:0034453,microtubule anchoring +GO:0034454,microtubule anchoring at centrosome +GO:0034465,response to carbon monoxide +GO:0034470,ncRNA processing +GO:0034471,ncRNA 5'-end processing +GO:0034472,snRNA 3'-end processing +GO:0034473,U1 snRNA 3'-end processing +GO:0034475,U4 snRNA 3'-end processing +GO:0034476,U5 snRNA 3'-end processing +GO:0034497,protein localization to pre-autophagosomal structure +GO:0034498,early endosome to Golgi transport +GO:0034499,late endosome to Golgi transport +GO:0034501,protein localization to kinetochore +GO:0034502,protein localization to chromosome +GO:0034504,protein localization to nucleus +GO:0034505,tooth mineralization +GO:0034508,centromere complex assembly +GO:0034551,mitochondrial respiratory chain complex III assembly +GO:0034587,piRNA metabolic process +GO:0034599,cellular response to oxidative stress +GO:0034605,cellular response to heat +GO:0034612,response to tumor necrosis factor +GO:0034614,cellular response to reactive oxygen species +GO:0034616,response to laminar fluid shear stress +GO:0034620,cellular response to unfolded protein +GO:0034622,cellular macromolecular complex assembly +GO:0034625,"fatty acid elongation, monounsaturated fatty acid" +GO:0034626,"fatty acid elongation, polyunsaturated fatty acid" +GO:0034627,'de novo' NAD biosynthetic process +GO:0034628,'de novo' NAD biosynthetic process from aspartate +GO:0034629,cellular protein complex localization +GO:0034637,cellular carbohydrate biosynthetic process +GO:0034638,phosphatidylcholine catabolic process +GO:0034643,"establishment of mitochondrion localization, microtubule-mediated" +GO:0034644,cellular response to UV +GO:0034650,cortisol metabolic process +GO:0034651,cortisol biosynthetic process +GO:0034653,retinoic acid catabolic process +GO:0034655,nucleobase-containing compound catabolic process +GO:0034656,nucleobase-containing small molecule catabolic process +GO:0034660,ncRNA metabolic process +GO:0034661,ncRNA catabolic process +GO:0034694,response to prostaglandin +GO:0034695,response to prostaglandin E +GO:0034696,response to prostaglandin F +GO:0034698,response to gonadotropin +GO:0034699,response to luteinizing hormone +GO:0034720,histone H3-K4 demethylation +GO:0034723,DNA replication-dependent nucleosome organization +GO:0034724,DNA replication-independent nucleosome organization +GO:0034727,piecemeal microautophagy of nucleus +GO:0034728,nucleosome organization +GO:0034754,cellular hormone metabolic process +GO:0034755,iron ion transmembrane transport +GO:0034756,regulation of iron ion transport +GO:0034758,positive regulation of iron ion transport +GO:0034762,regulation of transmembrane transport +GO:0034763,negative regulation of transmembrane transport +GO:0034764,positive regulation of transmembrane transport +GO:0034765,regulation of ion transmembrane transport +GO:0034766,negative regulation of ion transmembrane transport +GO:0034767,positive regulation of ion transmembrane transport +GO:0034769,basement membrane disassembly +GO:0034770,histone H4-K20 methylation +GO:0034773,histone H4-K20 trimethylation +GO:0034776,response to histamine +GO:0034968,histone lysine methylation +GO:0034969,histone arginine methylation +GO:0034970,histone H3-R2 methylation +GO:0034971,histone H3-R17 methylation +GO:0034975,protein folding in endoplasmic reticulum +GO:0034976,response to endoplasmic reticulum stress +GO:0034982,mitochondrial protein processing +GO:0034983,peptidyl-lysine deacetylation +GO:0035019,somatic stem cell population maintenance +GO:0035020,regulation of Rac protein signal transduction +GO:0035021,negative regulation of Rac protein signal transduction +GO:0035022,positive regulation of Rac protein signal transduction +GO:0035023,regulation of Rho protein signal transduction +GO:0035024,negative regulation of Rho protein signal transduction +GO:0035025,positive regulation of Rho protein signal transduction +GO:0035026,leading edge cell differentiation +GO:0035036,sperm-egg recognition +GO:0035039,male pronucleus assembly +GO:0035050,embryonic heart tube development +GO:0035051,cardiocyte differentiation +GO:0035054,embryonic heart tube anterior/posterior pattern specification +GO:0035058,nonmotile primary cilium assembly +GO:0035065,regulation of histone acetylation +GO:0035066,positive regulation of histone acetylation +GO:0035067,negative regulation of histone acetylation +GO:0035082,axoneme assembly +GO:0035087,siRNA loading onto RISC involved in RNA interference +GO:0035088,establishment or maintenance of apical/basal cell polarity +GO:0035089,establishment of apical/basal cell polarity +GO:0035090,maintenance of apical/basal cell polarity +GO:0035092,sperm chromatin condensation +GO:0035093,"spermatogenesis, exchange of chromosomal proteins" +GO:0035094,response to nicotine +GO:0035095,behavioral response to nicotine +GO:0035106,operant conditioning +GO:0035107,appendage morphogenesis +GO:0035108,limb morphogenesis +GO:0035112,genitalia morphogenesis +GO:0035113,embryonic appendage morphogenesis +GO:0035115,embryonic forelimb morphogenesis +GO:0035116,embryonic hindlimb morphogenesis +GO:0035136,forelimb morphogenesis +GO:0035137,hindlimb morphogenesis +GO:0035148,tube formation +GO:0035150,regulation of tube size +GO:0035162,embryonic hemopoiesis +GO:0035166,post-embryonic hemopoiesis +GO:0035176,social behavior +GO:0035188,hatching +GO:0035194,posttranscriptional gene silencing by RNA +GO:0035195,gene silencing by miRNA +GO:0035196,production of miRNAs involved in gene silencing by miRNA +GO:0035234,ectopic germ cell programmed cell death +GO:0035235,ionotropic glutamate receptor signaling pathway +GO:0035239,tube morphogenesis +GO:0035246,peptidyl-arginine N-methylation +GO:0035247,peptidyl-arginine omega-N-methylation +GO:0035249,"synaptic transmission, glutamatergic" +GO:0035261,external genitalia morphogenesis +GO:0035264,multicellular organism growth +GO:0035265,organ growth +GO:0035268,protein mannosylation +GO:0035269,protein O-linked mannosylation +GO:0035270,endocrine system development +GO:0035272,exocrine system development +GO:0035278,miRNA mediated inhibition of translation +GO:0035279,mRNA cleavage involved in gene silencing by miRNA +GO:0035280,miRNA loading onto RISC involved in gene silencing by miRNA +GO:0035281,pre-miRNA export from nucleus +GO:0035282,segmentation +GO:0035283,central nervous system segmentation +GO:0035284,brain segmentation +GO:0035290,trunk segmentation +GO:0035295,tube development +GO:0035303,regulation of dephosphorylation +GO:0035304,regulation of protein dephosphorylation +GO:0035305,negative regulation of dephosphorylation +GO:0035306,positive regulation of dephosphorylation +GO:0035307,positive regulation of protein dephosphorylation +GO:0035308,negative regulation of protein dephosphorylation +GO:0035313,"wound healing, spreading of epidermal cells" +GO:0035315,hair cell differentiation +GO:0035329,hippo signaling +GO:0035330,regulation of hippo signaling +GO:0035331,negative regulation of hippo signaling +GO:0035335,peptidyl-tyrosine dephosphorylation +GO:0035336,long-chain fatty-acyl-CoA metabolic process +GO:0035337,fatty-acyl-CoA metabolic process +GO:0035338,long-chain fatty-acyl-CoA biosynthetic process +GO:0035349,coenzyme A transmembrane transport +GO:0035356,cellular triglyceride homeostasis +GO:0035357,peroxisome proliferator activated receptor signaling pathway +GO:0035358,regulation of peroxisome proliferator activated receptor signaling pathway +GO:0035359,negative regulation of peroxisome proliferator activated receptor signaling pathway +GO:0035360,positive regulation of peroxisome proliferator activated receptor signaling pathway +GO:0035372,protein localization to microtubule +GO:0035376,sterol import +GO:0035382,sterol transmembrane transport +GO:0035383,thioester metabolic process +GO:0035384,thioester biosynthetic process +GO:0035385,Roundabout signaling pathway +GO:0035397,helper T cell enhancement of adaptive immune response +GO:0035404,histone-serine phosphorylation +GO:0035405,histone-threonine phosphorylation +GO:0035407,histone H3-T11 phosphorylation +GO:0035408,histone H3-T6 phosphorylation +GO:0035411,catenin import into nucleus +GO:0035412,regulation of catenin import into nucleus +GO:0035413,positive regulation of catenin import into nucleus +GO:0035414,negative regulation of catenin import into nucleus +GO:0035418,protein localization to synapse +GO:0035419,activation of MAPK activity involved in innate immune response +GO:0035425,autocrine signaling +GO:0035426,extracellular matrix-cell signaling +GO:0035428,hexose transmembrane transport +GO:0035434,copper ion transmembrane transport +GO:0035435,phosphate ion transmembrane transport +GO:0035437,maintenance of protein localization in endoplasmic reticulum +GO:0035441,cell migration involved in vasculogenesis +GO:0035455,response to interferon-alpha +GO:0035456,response to interferon-beta +GO:0035457,cellular response to interferon-alpha +GO:0035458,cellular response to interferon-beta +GO:0035459,cargo loading into vesicle +GO:0035461,vitamin transmembrane transport +GO:0035469,determination of pancreatic left/right asymmetry +GO:0035470,positive regulation of vascular wound healing +GO:0035482,gastric motility +GO:0035483,gastric emptying +GO:0035493,SNARE complex assembly +GO:0035494,SNARE complex disassembly +GO:0035498,carnosine metabolic process +GO:0035502,metanephric part of ureteric bud development +GO:0035507,regulation of myosin-light-chain-phosphatase activity +GO:0035509,negative regulation of myosin-light-chain-phosphatase activity +GO:0035510,DNA dealkylation +GO:0035511,oxidative DNA demethylation +GO:0035513,oxidative RNA demethylation +GO:0035518,histone H2A monoubiquitination +GO:0035519,protein K29-linked ubiquitination +GO:0035520,monoubiquitinated protein deubiquitination +GO:0035521,monoubiquitinated histone deubiquitination +GO:0035522,monoubiquitinated histone H2A deubiquitination +GO:0035523,protein K29-linked deubiquitination +GO:0035524,proline transmembrane transport +GO:0035526,"retrograde transport, plasma membrane to Golgi" +GO:0035542,regulation of SNARE complex assembly +GO:0035544,negative regulation of SNARE complex assembly +GO:0035552,oxidative single-stranded DNA demethylation +GO:0035553,oxidative single-stranded RNA demethylation +GO:0035561,regulation of chromatin binding +GO:0035562,negative regulation of chromatin binding +GO:0035563,positive regulation of chromatin binding +GO:0035564,regulation of kidney size +GO:0035566,regulation of metanephros size +GO:0035567,non-canonical Wnt signaling pathway +GO:0035574,histone H4-K20 demethylation +GO:0035581,sequestering of extracellular ligand from receptor +GO:0035582,sequestering of BMP in extracellular matrix +GO:0035583,sequestering of TGFbeta in extracellular matrix +GO:0035584,calcium-mediated signaling using intracellular calcium source +GO:0035585,calcium-mediated signaling using extracellular calcium source +GO:0035587,purinergic receptor signaling pathway +GO:0035588,G-protein coupled purinergic receptor signaling pathway +GO:0035589,G-protein coupled purinergic nucleotide receptor signaling pathway +GO:0035590,purinergic nucleotide receptor signaling pathway +GO:0035601,protein deacylation +GO:0035606,peptidyl-cysteine S-trans-nitrosylation +GO:0035607,fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development +GO:0035608,protein deglutamylation +GO:0035609,C-terminal protein deglutamylation +GO:0035610,protein side chain deglutamylation +GO:0035616,histone H2B conserved C-terminal lysine deubiquitination +GO:0035617,stress granule disassembly +GO:0035621,ER to Golgi ceramide transport +GO:0035622,intrahepatic bile duct development +GO:0035624,receptor transactivation +GO:0035625,epidermal growth factor-activated receptor transactivation by G-protein coupled receptor signaling pathway +GO:0035627,ceramide transport +GO:0035630,bone mineralization involved in bone maturation +GO:0035633,maintenance of blood-brain barrier +GO:0035634,response to stilbenoid +GO:0035637,multicellular organismal signaling +GO:0035640,exploration behavior +GO:0035641,locomotory exploration behavior +GO:0035646,endosome to melanosome transport +GO:0035666,TRIF-dependent toll-like receptor signaling pathway +GO:0035668,TRAM-dependent toll-like receptor signaling pathway +GO:0035669,TRAM-dependent toll-like receptor 4 signaling pathway +GO:0035672,oligopeptide transmembrane transport +GO:0035690,cellular response to drug +GO:0035694,mitochondrial protein catabolic process +GO:0035701,hematopoietic stem cell migration +GO:0035710,"CD4-positive, alpha-beta T cell activation" +GO:0035711,T-helper 1 cell activation +GO:0035721,intraciliary retrograde transport +GO:0035722,interleukin-12-mediated signaling pathway +GO:0035725,sodium ion transmembrane transport +GO:0035726,common myeloid progenitor cell proliferation +GO:0035728,response to hepatocyte growth factor +GO:0035729,cellular response to hepatocyte growth factor stimulus +GO:0035733,hepatic stellate cell activation +GO:0035735,intraciliary transport involved in cilium morphogenesis +GO:0035743,"CD4-positive, alpha-beta T cell cytokine production" +GO:0035745,T-helper 2 cell cytokine production +GO:0035747,natural killer cell chemotaxis +GO:0035751,regulation of lysosomal lumen pH +GO:0035754,B cell chemotaxis +GO:0035759,mesangial cell-matrix adhesion +GO:0035767,endothelial cell chemotaxis +GO:0035771,interleukin-4-mediated signaling pathway +GO:0035773,insulin secretion involved in cellular response to glucose stimulus +GO:0035774,positive regulation of insulin secretion involved in cellular response to glucose stimulus +GO:0035787,cell migration involved in kidney development +GO:0035791,platelet-derived growth factor receptor-beta signaling pathway +GO:0035793,positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway +GO:0035794,positive regulation of mitochondrial membrane permeability +GO:0035795,negative regulation of mitochondrial membrane permeability +GO:0035799,ureter maturation +GO:0035801,adrenal cortex development +GO:0035802,adrenal cortex formation +GO:0035803,egg coat formation +GO:0035809,regulation of urine volume +GO:0035810,positive regulation of urine volume +GO:0035811,negative regulation of urine volume +GO:0035813,regulation of renal sodium excretion +GO:0035814,negative regulation of renal sodium excretion +GO:0035815,positive regulation of renal sodium excretion +GO:0035821,modification of morphology or physiology of other organism +GO:0035822,gene conversion +GO:0035825,reciprocal DNA recombination +GO:0035844,cloaca development +GO:0035845,photoreceptor cell outer segment organization +GO:0035850,epithelial cell differentiation involved in kidney development +GO:0035854,eosinophil fate commitment +GO:0035855,megakaryocyte development +GO:0035860,glial cell-derived neurotrophic factor receptor signaling pathway +GO:0035864,response to potassium ion +GO:0035865,cellular response to potassium ion +GO:0035871,protein K11-linked deubiquitination +GO:0035872,"nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" +GO:0035873,lactate transmembrane transport +GO:0035878,nail development +GO:0035879,plasma membrane lactate transport +GO:0035880,embryonic nail plate morphogenesis +GO:0035881,amacrine cell differentiation +GO:0035883,enteroendocrine cell differentiation +GO:0035886,vascular smooth muscle cell differentiation +GO:0035902,response to immobilization stress +GO:0035904,aorta development +GO:0035905,ascending aorta development +GO:0035907,dorsal aorta development +GO:0035909,aorta morphogenesis +GO:0035910,ascending aorta morphogenesis +GO:0035912,dorsal aorta morphogenesis +GO:0035914,skeletal muscle cell differentiation +GO:0035922,foramen ovale closure +GO:0035924,cellular response to vascular endothelial growth factor stimulus +GO:0035926,chemokine (C-C motif) ligand 2 secretion +GO:0035927,RNA import into mitochondrion +GO:0035928,rRNA import into mitochondrion +GO:0035929,steroid hormone secretion +GO:0035930,corticosteroid hormone secretion +GO:0035947,regulation of gluconeogenesis by regulation of transcription from RNA polymerase II promoter +GO:0035948,positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter +GO:0035962,response to interleukin-13 +GO:0035963,cellular response to interleukin-13 +GO:0035964,COPI-coated vesicle budding +GO:0035965,cardiolipin acyl-chain remodeling +GO:0035966,response to topologically incorrect protein +GO:0035967,cellular response to topologically incorrect protein +GO:0035970,peptidyl-threonine dephosphorylation +GO:0035973,aggrephagy +GO:0035977,protein deglycosylation involved in glycoprotein catabolic process +GO:0035986,senescence-associated heterochromatin focus assembly +GO:0035987,endodermal cell differentiation +GO:0035988,chondrocyte proliferation +GO:0035989,tendon development +GO:0035990,tendon cell differentiation +GO:0035992,tendon formation +GO:0035993,deltoid tuberosity development +GO:0035994,response to muscle stretch +GO:0035995,detection of muscle stretch +GO:0035999,tetrahydrofolate interconversion +GO:0036003,positive regulation of transcription from RNA polymerase II promoter in response to stress +GO:0036005,response to macrophage colony-stimulating factor +GO:0036006,cellular response to macrophage colony-stimulating factor stimulus +GO:0036010,protein localization to endosome +GO:0036015,response to interleukin-3 +GO:0036016,cellular response to interleukin-3 +GO:0036017,response to erythropoietin +GO:0036018,cellular response to erythropoietin +GO:0036022,limb joint morphogenesis +GO:0036023,embryonic skeletal limb joint morphogenesis +GO:0036035,osteoclast development +GO:0036037,"CD8-positive, alpha-beta T cell activation" +GO:0036065,fucosylation +GO:0036066,protein O-linked fucosylation +GO:0036072,direct ossification +GO:0036075,replacement ossification +GO:0036089,cleavage furrow formation +GO:0036091,positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress +GO:0036092,phosphatidylinositol-3-phosphate biosynthetic process +GO:0036093,germ cell proliferation +GO:0036100,leukotriene catabolic process +GO:0036101,leukotriene B4 catabolic process +GO:0036102,leukotriene B4 metabolic process +GO:0036109,alpha-linolenic acid metabolic process +GO:0036112,medium-chain fatty-acyl-CoA metabolic process +GO:0036115,fatty-acyl-CoA catabolic process +GO:0036119,response to platelet-derived growth factor +GO:0036120,cellular response to platelet-derived growth factor stimulus +GO:0036123,histone H3-K9 dimethylation +GO:0036124,histone H3-K9 trimethylation +GO:0036148,phosphatidylglycerol acyl-chain remodeling +GO:0036149,phosphatidylinositol acyl-chain remodeling +GO:0036150,phosphatidylserine acyl-chain remodeling +GO:0036151,phosphatidylcholine acyl-chain remodeling +GO:0036152,phosphatidylethanolamine acyl-chain remodeling +GO:0036155,acylglycerol acyl-chain remodeling +GO:0036158,outer dynein arm assembly +GO:0036159,inner dynein arm assembly +GO:0036215,response to stem cell factor +GO:0036216,cellular response to stem cell factor stimulus +GO:0036230,granulocyte activation +GO:0036233,glycine import +GO:0036245,cellular response to menadione +GO:0036257,multivesicular body organization +GO:0036258,multivesicular body assembly +GO:0036260,RNA capping +GO:0036265,RNA (guanine-N7)-methylation +GO:0036270,response to diuretic +GO:0036273,response to statin +GO:0036276,response to antidepressant +GO:0036289,peptidyl-serine autophosphorylation +GO:0036292,DNA rewinding +GO:0036293,response to decreased oxygen levels +GO:0036294,cellular response to decreased oxygen levels +GO:0036295,cellular response to increased oxygen levels +GO:0036296,response to increased oxygen levels +GO:0036297,interstrand cross-link repair +GO:0036302,atrioventricular canal development +GO:0036303,lymph vessel morphogenesis +GO:0036304,umbilical cord morphogenesis +GO:0036309,protein localization to M-band +GO:0036314,response to sterol +GO:0036315,cellular response to sterol +GO:0036324,vascular endothelial growth factor receptor-2 signaling pathway +GO:0036336,dendritic cell migration +GO:0036342,post-anal tail morphogenesis +GO:0036344,platelet morphogenesis +GO:0036353,histone H2A-K119 monoubiquitination +GO:0036367,light adaption +GO:0036376,sodium ion export from cell +GO:0036378,calcitriol biosynthetic process from calciol +GO:0036413,histone H3-R26 citrullination +GO:0036414,histone citrullination +GO:0036438,maintenance of lens transparency +GO:0036444,calcium ion transmembrane import into mitochondrion +GO:0036445,neuronal stem cell division +GO:0036451,cap mRNA methylation +GO:0036462,TRAIL-activated apoptotic signaling pathway +GO:0036465,synaptic vesicle recycling +GO:0036473,cell death in response to oxidative stress +GO:0036474,cell death in response to hydrogen peroxide +GO:0036481,intrinsic apoptotic signaling pathway in response to hydrogen peroxide +GO:0036484,trunk neural crest cell migration +GO:0036486,ventral trunk neural crest cell migration +GO:0036490,regulation of translation in response to endoplasmic reticulum stress +GO:0036491,regulation of translation initiation in response to endoplasmic reticulum stress +GO:0036492,eiF2alpha phosphorylation in response to endoplasmic reticulum stress +GO:0036493,positive regulation of translation in response to endoplasmic reticulum stress +GO:0036496,regulation of translational initiation by eIF2 alpha dephosphorylation +GO:0036498,IRE1-mediated unfolded protein response +GO:0036499,PERK-mediated unfolded protein response +GO:0036500,ATF6-mediated unfolded protein response +GO:0036503,ERAD pathway +GO:0036506,maintenance of unfolded protein +GO:0036507,protein demannosylation +GO:0036508,"protein alpha-1,2-demannosylation" +GO:0036509,trimming of terminal mannose on B branch +GO:0038001,paracrine signaling +GO:0038003,opioid receptor signaling pathway +GO:0038007,netrin-activated signaling pathway +GO:0038018,Wnt receptor catabolic process +GO:0038026,reelin-mediated signaling pathway +GO:0038027,apolipoprotein A-I-mediated signaling pathway +GO:0038028,insulin receptor signaling pathway via phosphatidylinositol 3-kinase +GO:0038030,non-canonical Wnt signaling pathway via MAPK cascade +GO:0038031,non-canonical Wnt signaling pathway via JNK cascade +GO:0038033,positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway +GO:0038034,signal transduction in absence of ligand +GO:0038043,interleukin-5-mediated signaling pathway +GO:0038060,nitric oxide-cGMP-mediated signaling pathway +GO:0038061,NIK/NF-kappaB signaling +GO:0038063,collagen-activated tyrosine kinase receptor signaling pathway +GO:0038065,collagen-activated signaling pathway +GO:0038066,p38MAPK cascade +GO:0038083,peptidyl-tyrosine autophosphorylation +GO:0038084,vascular endothelial growth factor signaling pathway +GO:0038086,VEGF-activated platelet-derived growth factor receptor signaling pathway +GO:0038089,positive regulation of cell migration by vascular endothelial growth factor signaling pathway +GO:0038091,positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway +GO:0038092,nodal signaling pathway +GO:0038093,Fc receptor signaling pathway +GO:0038094,Fc-gamma receptor signaling pathway +GO:0038095,Fc-epsilon receptor signaling pathway +GO:0038096,Fc-gamma receptor signaling pathway involved in phagocytosis +GO:0038098,sequestering of BMP from receptor via BMP binding +GO:0038107,nodal signaling pathway involved in determination of left/right asymmetry +GO:0038108,negative regulation of appetite by leptin-mediated signaling pathway +GO:0038109,Kit signaling pathway +GO:0038110,interleukin-2-mediated signaling pathway +GO:0038111,interleukin-7-mediated signaling pathway +GO:0038112,interleukin-8-mediated signaling pathway +GO:0038123,toll-like receptor TLR1:TLR2 signaling pathway +GO:0038124,toll-like receptor TLR6:TLR2 signaling pathway +GO:0038127,ERBB signaling pathway +GO:0038128,ERBB2 signaling pathway +GO:0038145,macrophage colony-stimulating factor signaling pathway +GO:0038155,interleukin-23-mediated signaling pathway +GO:0038156,interleukin-3-mediated signaling pathway +GO:0038158,granulocyte colony-stimulating factor signaling pathway +GO:0038161,prolactin signaling pathway +GO:0038162,erythropoietin-mediated signaling pathway +GO:0038163,thrombopoietin-mediated signaling pathway +GO:0038165,oncostatin-M-mediated signaling pathway +GO:0038166,angiotensin-activated signaling pathway +GO:0038169,somatostatin receptor signaling pathway +GO:0038170,somatostatin signaling pathway +GO:0038171,cannabinoid signaling pathway +GO:0038179,neurotrophin signaling pathway +GO:0038180,nerve growth factor signaling pathway +GO:0038183,bile acid signaling pathway +GO:0038188,cholecystokinin signaling pathway +GO:0038189,neuropilin signaling pathway +GO:0038190,VEGF-activated neuropilin signaling pathway +GO:0038194,thyroid-stimulating hormone signaling pathway +GO:0038203,TORC2 signaling +GO:0039003,pronephric field specification +GO:0039017,pattern specification involved in pronephros development +GO:0039019,pronephric nephron development +GO:0039020,pronephric nephron tubule development +GO:0039519,modulation by virus of host autophagy +GO:0039526,modulation by virus of host apoptotic process +GO:0039528,cytoplasmic pattern recognition receptor signaling pathway in response to virus +GO:0039529,RIG-I signaling pathway +GO:0039530,MDA-5 signaling pathway +GO:0039531,regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway +GO:0039532,negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway +GO:0039533,regulation of MDA-5 signaling pathway +GO:0039534,negative regulation of MDA-5 signaling pathway +GO:0039535,regulation of RIG-I signaling pathway +GO:0039536,negative regulation of RIG-I signaling pathway +GO:0039656,modulation by virus of host gene expression +GO:0039663,membrane fusion involved in viral entry into host cell +GO:0039689,negative stranded viral RNA replication +GO:0039692,single stranded viral RNA replication via double stranded DNA intermediate +GO:0039694,viral RNA genome replication +GO:0039702,viral budding via host ESCRT complex +GO:0039703,RNA replication +GO:0040001,establishment of mitotic spindle localization +GO:0040007,growth +GO:0040008,regulation of growth +GO:0040009,regulation of growth rate +GO:0040012,regulation of locomotion +GO:0040013,negative regulation of locomotion +GO:0040014,regulation of multicellular organism growth +GO:0040015,negative regulation of multicellular organism growth +GO:0040016,embryonic cleavage +GO:0040017,positive regulation of locomotion +GO:0040018,positive regulation of multicellular organism growth +GO:0040019,positive regulation of embryonic development +GO:0040020,regulation of meiotic nuclear division +GO:0040023,establishment of nucleus localization +GO:0040029,"regulation of gene expression, epigenetic" +GO:0040031,snRNA modification +GO:0040033,"negative regulation of translation, ncRNA-mediated" +GO:0040034,"regulation of development, heterochronic" +GO:0040036,regulation of fibroblast growth factor receptor signaling pathway +GO:0040037,negative regulation of fibroblast growth factor receptor signaling pathway +GO:0040038,polar body extrusion after meiotic divisions +GO:0042026,protein refolding +GO:0042035,regulation of cytokine biosynthetic process +GO:0042036,negative regulation of cytokine biosynthetic process +GO:0042044,fluid transport +GO:0042045,epithelial fluid transport +GO:0042048,olfactory behavior +GO:0042053,regulation of dopamine metabolic process +GO:0042058,regulation of epidermal growth factor receptor signaling pathway +GO:0042059,negative regulation of epidermal growth factor receptor signaling pathway +GO:0042060,wound healing +GO:0042063,gliogenesis +GO:0042069,regulation of catecholamine metabolic process +GO:0042073,intraciliary transport +GO:0042074,cell migration involved in gastrulation +GO:0042078,germ-line stem cell division +GO:0042088,T-helper 1 type immune response +GO:0042089,cytokine biosynthetic process +GO:0042092,type 2 immune response +GO:0042093,T-helper cell differentiation +GO:0042094,interleukin-2 biosynthetic process +GO:0042095,interferon-gamma biosynthetic process +GO:0042098,T cell proliferation +GO:0042100,B cell proliferation +GO:0042102,positive regulation of T cell proliferation +GO:0042104,positive regulation of activated T cell proliferation +GO:0042107,cytokine metabolic process +GO:0042108,positive regulation of cytokine biosynthetic process +GO:0042109,lymphotoxin A biosynthetic process +GO:0042110,T cell activation +GO:0042113,B cell activation +GO:0042116,macrophage activation +GO:0042117,monocyte activation +GO:0042118,endothelial cell activation +GO:0042119,neutrophil activation +GO:0042126,nitrate metabolic process +GO:0042129,regulation of T cell proliferation +GO:0042130,negative regulation of T cell proliferation +GO:0042133,neurotransmitter metabolic process +GO:0042135,neurotransmitter catabolic process +GO:0042136,neurotransmitter biosynthetic process +GO:0042137,sequestering of neurotransmitter +GO:0042138,meiotic DNA double-strand break formation +GO:0042147,"retrograde transport, endosome to Golgi" +GO:0042148,strand invasion +GO:0042149,cellular response to glucose starvation +GO:0042157,lipoprotein metabolic process +GO:0042158,lipoprotein biosynthetic process +GO:0042159,lipoprotein catabolic process +GO:0042167,heme catabolic process +GO:0042168,heme metabolic process +GO:0042176,regulation of protein catabolic process +GO:0042177,negative regulation of protein catabolic process +GO:0042178,xenobiotic catabolic process +GO:0042180,cellular ketone metabolic process +GO:0042181,ketone biosynthetic process +GO:0042182,ketone catabolic process +GO:0042196,chlorinated hydrocarbon metabolic process +GO:0042197,halogenated hydrocarbon metabolic process +GO:0042214,terpene metabolic process +GO:0042219,cellular modified amino acid catabolic process +GO:0042220,response to cocaine +GO:0042226,interleukin-6 biosynthetic process +GO:0042245,RNA repair +GO:0042246,tissue regeneration +GO:0042249,establishment of planar polarity of embryonic epithelium +GO:0042254,ribosome biogenesis +GO:0042255,ribosome assembly +GO:0042256,mature ribosome assembly +GO:0042262,DNA protection +GO:0042264,peptidyl-aspartic acid hydroxylation +GO:0042267,natural killer cell mediated cytotoxicity +GO:0042268,regulation of cytolysis +GO:0042269,regulation of natural killer cell mediated cytotoxicity +GO:0042270,protection from natural killer cell mediated cytotoxicity +GO:0042271,susceptibility to natural killer cell mediated cytotoxicity +GO:0042273,ribosomal large subunit biogenesis +GO:0042274,ribosomal small subunit biogenesis +GO:0042275,error-free postreplication DNA repair +GO:0042276,error-prone translesion synthesis +GO:0042278,purine nucleoside metabolic process +GO:0042297,vocal learning +GO:0042303,molting cycle +GO:0042304,regulation of fatty acid biosynthetic process +GO:0042306,regulation of protein import into nucleus +GO:0042307,positive regulation of protein import into nucleus +GO:0042308,negative regulation of protein import into nucleus +GO:0042309,homoiothermy +GO:0042310,vasoconstriction +GO:0042311,vasodilation +GO:0042312,regulation of vasodilation +GO:0042320,"regulation of circadian sleep/wake cycle, REM sleep" +GO:0042321,"negative regulation of circadian sleep/wake cycle, sleep" +GO:0042322,"negative regulation of circadian sleep/wake cycle, REM sleep" +GO:0042323,"negative regulation of circadian sleep/wake cycle, non-REM sleep" +GO:0042326,negative regulation of phosphorylation +GO:0042330,taxis +GO:0042335,cuticle development +GO:0042339,keratan sulfate metabolic process +GO:0042340,keratan sulfate catabolic process +GO:0042345,regulation of NF-kappaB import into nucleus +GO:0042346,positive regulation of NF-kappaB import into nucleus +GO:0042347,negative regulation of NF-kappaB import into nucleus +GO:0042350,GDP-L-fucose biosynthetic process +GO:0042351,'de novo' GDP-L-fucose biosynthetic process +GO:0042354,L-fucose metabolic process +GO:0042355,L-fucose catabolic process +GO:0042357,thiamine diphosphate metabolic process +GO:0042359,vitamin D metabolic process +GO:0042360,vitamin E metabolic process +GO:0042361,menaquinone catabolic process +GO:0042362,fat-soluble vitamin biosynthetic process +GO:0042363,fat-soluble vitamin catabolic process +GO:0042364,water-soluble vitamin biosynthetic process +GO:0042368,vitamin D biosynthetic process +GO:0042369,vitamin D catabolic process +GO:0042373,vitamin K metabolic process +GO:0042374,phylloquinone metabolic process +GO:0042376,phylloquinone catabolic process +GO:0042377,vitamin K catabolic process +GO:0042384,cilium assembly +GO:0042391,regulation of membrane potential +GO:0042398,cellular modified amino acid biosynthetic process +GO:0042401,cellular biogenic amine biosynthetic process +GO:0042402,cellular biogenic amine catabolic process +GO:0042403,thyroid hormone metabolic process +GO:0042407,cristae formation +GO:0042412,taurine biosynthetic process +GO:0042414,epinephrine metabolic process +GO:0042415,norepinephrine metabolic process +GO:0042416,dopamine biosynthetic process +GO:0042417,dopamine metabolic process +GO:0042418,epinephrine biosynthetic process +GO:0042420,dopamine catabolic process +GO:0042421,norepinephrine biosynthetic process +GO:0042423,catecholamine biosynthetic process +GO:0042424,catecholamine catabolic process +GO:0042427,serotonin biosynthetic process +GO:0042428,serotonin metabolic process +GO:0042430,indole-containing compound metabolic process +GO:0042435,indole-containing compound biosynthetic process +GO:0042436,indole-containing compound catabolic process +GO:0042438,melanin biosynthetic process +GO:0042439,ethanolamine-containing compound metabolic process +GO:0042440,pigment metabolic process +GO:0042441,eye pigment metabolic process +GO:0042445,hormone metabolic process +GO:0042446,hormone biosynthetic process +GO:0042447,hormone catabolic process +GO:0042448,progesterone metabolic process +GO:0042450,arginine biosynthetic process via ornithine +GO:0042451,purine nucleoside biosynthetic process +GO:0042454,ribonucleoside catabolic process +GO:0042455,ribonucleoside biosynthetic process +GO:0042461,photoreceptor cell development +GO:0042462,eye photoreceptor cell development +GO:0042471,ear morphogenesis +GO:0042472,inner ear morphogenesis +GO:0042473,outer ear morphogenesis +GO:0042474,middle ear morphogenesis +GO:0042475,odontogenesis of dentin-containing tooth +GO:0042476,odontogenesis +GO:0042481,regulation of odontogenesis +GO:0042482,positive regulation of odontogenesis +GO:0042483,negative regulation of odontogenesis +GO:0042487,regulation of odontogenesis of dentin-containing tooth +GO:0042488,positive regulation of odontogenesis of dentin-containing tooth +GO:0042489,negative regulation of odontogenesis of dentin-containing tooth +GO:0042490,mechanoreceptor differentiation +GO:0042491,auditory receptor cell differentiation +GO:0042493,response to drug +GO:0042494,detection of bacterial lipoprotein +GO:0042495,detection of triacyl bacterial lipopeptide +GO:0042496,detection of diacyl bacterial lipopeptide +GO:0042501,serine phosphorylation of STAT protein +GO:0042503,tyrosine phosphorylation of Stat3 protein +GO:0042506,tyrosine phosphorylation of Stat5 protein +GO:0042508,tyrosine phosphorylation of Stat1 protein +GO:0042509,regulation of tyrosine phosphorylation of STAT protein +GO:0042510,regulation of tyrosine phosphorylation of Stat1 protein +GO:0042511,positive regulation of tyrosine phosphorylation of Stat1 protein +GO:0042516,regulation of tyrosine phosphorylation of Stat3 protein +GO:0042517,positive regulation of tyrosine phosphorylation of Stat3 protein +GO:0042518,negative regulation of tyrosine phosphorylation of Stat3 protein +GO:0042519,regulation of tyrosine phosphorylation of Stat4 protein +GO:0042520,positive regulation of tyrosine phosphorylation of Stat4 protein +GO:0042522,regulation of tyrosine phosphorylation of Stat5 protein +GO:0042523,positive regulation of tyrosine phosphorylation of Stat5 protein +GO:0042524,negative regulation of tyrosine phosphorylation of Stat5 protein +GO:0042525,regulation of tyrosine phosphorylation of Stat6 protein +GO:0042526,positive regulation of tyrosine phosphorylation of Stat6 protein +GO:0042531,positive regulation of tyrosine phosphorylation of STAT protein +GO:0042532,negative regulation of tyrosine phosphorylation of STAT protein +GO:0042534,regulation of tumor necrosis factor biosynthetic process +GO:0042535,positive regulation of tumor necrosis factor biosynthetic process +GO:0042536,negative regulation of tumor necrosis factor biosynthetic process +GO:0042537,benzene-containing compound metabolic process +GO:0042538,hyperosmotic salinity response +GO:0042541,hemoglobin biosynthetic process +GO:0042542,response to hydrogen peroxide +GO:0042546,cell wall biogenesis +GO:0042551,neuron maturation +GO:0042552,myelination +GO:0042554,superoxide anion generation +GO:0042558,pteridine-containing compound metabolic process +GO:0042559,pteridine-containing compound biosynthetic process +GO:0042560,pteridine-containing compound catabolic process +GO:0042572,retinol metabolic process +GO:0042573,retinoic acid metabolic process +GO:0042574,retinal metabolic process +GO:0042590,antigen processing and presentation of exogenous peptide antigen via MHC class I +GO:0042593,glucose homeostasis +GO:0042594,response to starvation +GO:0042595,behavioral response to starvation +GO:0042596,fear response +GO:0042631,cellular response to water deprivation +GO:0042632,cholesterol homeostasis +GO:0042633,hair cycle +GO:0042634,regulation of hair cycle +GO:0042635,positive regulation of hair cycle +GO:0042636,negative regulation of hair cycle +GO:0042659,regulation of cell fate specification +GO:0042660,positive regulation of cell fate specification +GO:0042661,regulation of mesodermal cell fate specification +GO:0042662,negative regulation of mesodermal cell fate specification +GO:0042663,regulation of endodermal cell fate specification +GO:0042668,auditory receptor cell fate determination +GO:0042670,retinal cone cell differentiation +GO:0042692,muscle cell differentiation +GO:0042693,muscle cell fate commitment +GO:0042695,thelarche +GO:0042698,ovulation cycle +GO:0042699,follicle-stimulating hormone signaling pathway +GO:0042700,luteinizing hormone signaling pathway +GO:0042701,progesterone secretion +GO:0042704,uterine wall breakdown +GO:0042706,eye photoreceptor cell fate commitment +GO:0042711,maternal behavior +GO:0042713,sperm ejaculation +GO:0042723,thiamine-containing compound metabolic process +GO:0042726,flavin-containing compound metabolic process +GO:0042727,flavin-containing compound biosynthetic process +GO:0042730,fibrinolysis +GO:0042732,D-xylose metabolic process +GO:0042733,embryonic digit morphogenesis +GO:0042737,drug catabolic process +GO:0042738,exogenous drug catabolic process +GO:0042742,defense response to bacterium +GO:0042743,hydrogen peroxide metabolic process +GO:0042744,hydrogen peroxide catabolic process +GO:0042745,circadian sleep/wake cycle +GO:0042747,"circadian sleep/wake cycle, REM sleep" +GO:0042749,regulation of circadian sleep/wake cycle +GO:0042752,regulation of circadian rhythm +GO:0042753,positive regulation of circadian rhythm +GO:0042754,negative regulation of circadian rhythm +GO:0042755,eating behavior +GO:0042756,drinking behavior +GO:0042758,long-chain fatty acid catabolic process +GO:0042759,long-chain fatty acid biosynthetic process +GO:0042760,very long-chain fatty acid catabolic process +GO:0042761,very long-chain fatty acid biosynthetic process +GO:0042762,regulation of sulfur metabolic process +GO:0042769,"DNA damage response, detection of DNA damage" +GO:0042770,signal transduction in response to DNA damage +GO:0042771,intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator +GO:0042772,"DNA damage response, signal transduction resulting in transcription" +GO:0042773,ATP synthesis coupled electron transport +GO:0042775,mitochondrial ATP synthesis coupled electron transport +GO:0042776,mitochondrial ATP synthesis coupled proton transport +GO:0042779,tRNA 3'-trailer cleavage +GO:0042780,tRNA 3'-end processing +GO:0042787,protein ubiquitination involved in ubiquitin-dependent protein catabolic process +GO:0042789,mRNA transcription from RNA polymerase II promoter +GO:0042790,transcription of nuclear large rRNA transcript from RNA polymerase I promoter +GO:0042791,5S class rRNA transcription from RNA polymerase III type 1 promoter +GO:0042795,snRNA transcription from RNA polymerase II promoter +GO:0042796,snRNA transcription from RNA polymerase III promoter +GO:0042797,tRNA transcription from RNA polymerase III promoter +GO:0042816,vitamin B6 metabolic process +GO:0042819,vitamin B6 biosynthetic process +GO:0042822,pyridoxal phosphate metabolic process +GO:0042823,pyridoxal phosphate biosynthetic process +GO:0042832,defense response to protozoan +GO:0042851,L-alanine metabolic process +GO:0042853,L-alanine catabolic process +GO:0042866,pyruvate biosynthetic process +GO:0042886,amide transport +GO:0042891,antibiotic transport +GO:0042904,9-cis-retinoic acid biosynthetic process +GO:0042905,9-cis-retinoic acid metabolic process +GO:0042908,xenobiotic transport +GO:0042921,glucocorticoid receptor signaling pathway +GO:0042940,D-amino acid transport +GO:0042942,D-serine transport +GO:0042953,lipoprotein transport +GO:0042976,activation of Janus kinase activity +GO:0042977,activation of JAK2 kinase activity +GO:0042982,amyloid precursor protein metabolic process +GO:0042984,regulation of amyloid precursor protein biosynthetic process +GO:0042985,negative regulation of amyloid precursor protein biosynthetic process +GO:0042986,positive regulation of amyloid precursor protein biosynthetic process +GO:0042987,amyloid precursor protein catabolic process +GO:0042989,sequestering of actin monomers +GO:0042990,regulation of transcription factor import into nucleus +GO:0042991,transcription factor import into nucleus +GO:0042992,negative regulation of transcription factor import into nucleus +GO:0042993,positive regulation of transcription factor import into nucleus +GO:0042994,cytoplasmic sequestering of transcription factor +GO:0042996,regulation of Golgi to plasma membrane protein transport +GO:0042997,negative regulation of Golgi to plasma membrane protein transport +GO:0042998,positive regulation of Golgi to plasma membrane protein transport +GO:0043001,Golgi to plasma membrane protein transport +GO:0043006,activation of phospholipase A2 activity by calcium-mediated signaling +GO:0043009,chordate embryonic development +GO:0043010,camera-type eye development +GO:0043011,myeloid dendritic cell differentiation +GO:0043029,T cell homeostasis +GO:0043030,regulation of macrophage activation +GO:0043031,negative regulation of macrophage activation +GO:0043032,positive regulation of macrophage activation +GO:0043038,amino acid activation +GO:0043039,tRNA aminoacylation +GO:0043043,peptide biosynthetic process +GO:0043044,ATP-dependent chromatin remodeling +GO:0043045,DNA methylation involved in embryo development +GO:0043046,DNA methylation involved in gamete generation +GO:0043049,otic placode formation +GO:0043060,meiotic metaphase I plate congression +GO:0043062,extracellular structure organization +GO:0043065,positive regulation of apoptotic process +GO:0043066,negative regulation of apoptotic process +GO:0043068,positive regulation of programmed cell death +GO:0043069,negative regulation of programmed cell death +GO:0043084,penile erection +GO:0043086,negative regulation of catalytic activity +GO:0043087,regulation of GTPase activity +GO:0043090,amino acid import +GO:0043091,L-arginine import +GO:0043092,L-amino acid import +GO:0043094,cellular metabolic compound salvage +GO:0043096,purine nucleobase salvage +GO:0043097,pyrimidine nucleoside salvage +GO:0043101,purine-containing compound salvage +GO:0043102,amino acid salvage +GO:0043103,hypoxanthine salvage +GO:0043112,receptor metabolic process +GO:0043113,receptor clustering +GO:0043114,regulation of vascular permeability +GO:0043116,negative regulation of vascular permeability +GO:0043117,positive regulation of vascular permeability +GO:0043122,regulation of I-kappaB kinase/NF-kappaB signaling +GO:0043123,positive regulation of I-kappaB kinase/NF-kappaB signaling +GO:0043124,negative regulation of I-kappaB kinase/NF-kappaB signaling +GO:0043129,surfactant homeostasis +GO:0043132,NAD transport +GO:0043134,regulation of hindgut contraction +GO:0043137,"DNA replication, removal of RNA primer" +GO:0043144,snoRNA processing +GO:0043146,spindle stabilization +GO:0043148,mitotic spindle stabilization +GO:0043149,stress fiber assembly +GO:0043152,induction of bacterial agglutination +GO:0043153,entrainment of circadian clock by photoperiod +GO:0043154,negative regulation of cysteine-type endopeptidase activity involved in apoptotic process +GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process +GO:0043162,ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway +GO:0043163,cell envelope organization +GO:0043171,peptide catabolic process +GO:0043173,nucleotide salvage +GO:0043174,nucleoside salvage +GO:0043200,response to amino acid +GO:0043201,response to leucine +GO:0043206,extracellular fibril organization +GO:0043207,response to external biotic stimulus +GO:0043217,myelin maintenance +GO:0043241,protein complex disassembly +GO:0043242,negative regulation of protein complex disassembly +GO:0043243,positive regulation of protein complex disassembly +GO:0043244,regulation of protein complex disassembly +GO:0043247,telomere maintenance in response to DNA damage +GO:0043248,proteasome assembly +GO:0043249,erythrocyte maturation +GO:0043252,sodium-independent organic anion transport +GO:0043254,regulation of protein complex assembly +GO:0043255,regulation of carbohydrate biosynthetic process +GO:0043266,regulation of potassium ion transport +GO:0043267,negative regulation of potassium ion transport +GO:0043268,positive regulation of potassium ion transport +GO:0043269,regulation of ion transport +GO:0043270,positive regulation of ion transport +GO:0043271,negative regulation of ion transport +GO:0043276,anoikis +GO:0043277,apoptotic cell clearance +GO:0043278,response to morphine +GO:0043279,response to alkaloid +GO:0043280,positive regulation of cysteine-type endopeptidase activity involved in apoptotic process +GO:0043281,regulation of cysteine-type endopeptidase activity involved in apoptotic process +GO:0043297,apical junction assembly +GO:0043299,leukocyte degranulation +GO:0043300,regulation of leukocyte degranulation +GO:0043301,negative regulation of leukocyte degranulation +GO:0043302,positive regulation of leukocyte degranulation +GO:0043303,mast cell degranulation +GO:0043304,regulation of mast cell degranulation +GO:0043305,negative regulation of mast cell degranulation +GO:0043306,positive regulation of mast cell degranulation +GO:0043307,eosinophil activation +GO:0043308,eosinophil degranulation +GO:0043309,regulation of eosinophil degranulation +GO:0043311,positive regulation of eosinophil degranulation +GO:0043312,neutrophil degranulation +GO:0043313,regulation of neutrophil degranulation +GO:0043314,negative regulation of neutrophil degranulation +GO:0043316,cytotoxic T cell degranulation +GO:0043320,natural killer cell degranulation +GO:0043321,regulation of natural killer cell degranulation +GO:0043323,positive regulation of natural killer cell degranulation +GO:0043324,pigment metabolic process involved in developmental pigmentation +GO:0043328,protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway +GO:0043330,response to exogenous dsRNA +GO:0043331,response to dsRNA +GO:0043335,protein unfolding +GO:0043353,enucleate erythrocyte differentiation +GO:0043366,beta selection +GO:0043367,"CD4-positive, alpha-beta T cell differentiation" +GO:0043368,positive T cell selection +GO:0043369,"CD4-positive or CD8-positive, alpha-beta T cell lineage commitment" +GO:0043370,"regulation of CD4-positive, alpha-beta T cell differentiation" +GO:0043371,"negative regulation of CD4-positive, alpha-beta T cell differentiation" +GO:0043372,"positive regulation of CD4-positive, alpha-beta T cell differentiation" +GO:0043373,"CD4-positive, alpha-beta T cell lineage commitment" +GO:0043374,"CD8-positive, alpha-beta T cell differentiation" +GO:0043376,"regulation of CD8-positive, alpha-beta T cell differentiation" +GO:0043380,regulation of memory T cell differentiation +GO:0043382,positive regulation of memory T cell differentiation +GO:0043383,negative T cell selection +GO:0043388,positive regulation of DNA binding +GO:0043392,negative regulation of DNA binding +GO:0043393,regulation of protein binding +GO:0043397,regulation of corticotropin-releasing hormone secretion +GO:0043401,steroid hormone mediated signaling pathway +GO:0043402,glucocorticoid mediated signaling pathway +GO:0043403,skeletal muscle tissue regeneration +GO:0043405,regulation of MAP kinase activity +GO:0043406,positive regulation of MAP kinase activity +GO:0043407,negative regulation of MAP kinase activity +GO:0043408,regulation of MAPK cascade +GO:0043409,negative regulation of MAPK cascade +GO:0043410,positive regulation of MAPK cascade +GO:0043413,macromolecule glycosylation +GO:0043414,macromolecule methylation +GO:0043415,positive regulation of skeletal muscle tissue regeneration +GO:0043416,regulation of skeletal muscle tissue regeneration +GO:0043418,homocysteine catabolic process +GO:0043420,anthranilate metabolic process +GO:0043433,negative regulation of sequence-specific DNA binding transcription factor activity +GO:0043434,response to peptide hormone +GO:0043435,response to corticotropin-releasing hormone +GO:0043455,regulation of secondary metabolic process +GO:0043456,regulation of pentose-phosphate shunt +GO:0043457,regulation of cellular respiration +GO:0043461,proton-transporting ATP synthase complex assembly +GO:0043462,regulation of ATPase activity +GO:0043465,regulation of fermentation +GO:0043467,regulation of generation of precursor metabolites and energy +GO:0043470,regulation of carbohydrate catabolic process +GO:0043471,regulation of cellular carbohydrate catabolic process +GO:0043473,pigmentation +GO:0043474,pigment metabolic process involved in pigmentation +GO:0043476,pigment accumulation +GO:0043482,cellular pigment accumulation +GO:0043484,regulation of RNA splicing +GO:0043485,endosome to pigment granule transport +GO:0043486,histone exchange +GO:0043487,regulation of RNA stability +GO:0043488,regulation of mRNA stability +GO:0043489,RNA stabilization +GO:0043490,malate-aspartate shuttle +GO:0043491,protein kinase B signaling +GO:0043496,regulation of protein homodimerization activity +GO:0043497,regulation of protein heterodimerization activity +GO:0043500,muscle adaptation +GO:0043501,skeletal muscle adaptation +GO:0043502,regulation of muscle adaptation +GO:0043503,skeletal muscle fiber adaptation +GO:0043504,mitochondrial DNA repair +GO:0043506,regulation of JUN kinase activity +GO:0043507,positive regulation of JUN kinase activity +GO:0043508,negative regulation of JUN kinase activity +GO:0043516,"regulation of DNA damage response, signal transduction by p53 class mediator" +GO:0043517,"positive regulation of DNA damage response, signal transduction by p53 class mediator" +GO:0043518,"negative regulation of DNA damage response, signal transduction by p53 class mediator" +GO:0043523,regulation of neuron apoptotic process +GO:0043524,negative regulation of neuron apoptotic process +GO:0043525,positive regulation of neuron apoptotic process +GO:0043534,blood vessel endothelial cell migration +GO:0043535,regulation of blood vessel endothelial cell migration +GO:0043536,positive regulation of blood vessel endothelial cell migration +GO:0043537,negative regulation of blood vessel endothelial cell migration +GO:0043542,endothelial cell migration +GO:0043543,protein acylation +GO:0043545,molybdopterin cofactor metabolic process +GO:0043547,positive regulation of GTPase activity +GO:0043549,regulation of kinase activity +GO:0043550,regulation of lipid kinase activity +GO:0043551,regulation of phosphatidylinositol 3-kinase activity +GO:0043552,positive regulation of phosphatidylinositol 3-kinase activity +GO:0043553,negative regulation of phosphatidylinositol 3-kinase activity +GO:0043555,regulation of translation in response to stress +GO:0043558,regulation of translational initiation in response to stress +GO:0043562,cellular response to nitrogen levels +GO:0043567,regulation of insulin-like growth factor receptor signaling pathway +GO:0043568,positive regulation of insulin-like growth factor receptor signaling pathway +GO:0043569,negative regulation of insulin-like growth factor receptor signaling pathway +GO:0043570,maintenance of DNA repeat elements +GO:0043574,peroxisomal transport +GO:0043576,regulation of respiratory gaseous exchange +GO:0043578,nuclear matrix organization +GO:0043583,ear development +GO:0043584,nose development +GO:0043585,nose morphogenesis +GO:0043586,tongue development +GO:0043587,tongue morphogenesis +GO:0043588,skin development +GO:0043589,skin morphogenesis +GO:0043603,cellular amide metabolic process +GO:0043604,amide biosynthetic process +GO:0043605,cellular amide catabolic process +GO:0043606,formamide metabolic process +GO:0043615,astrocyte cell migration +GO:0043616,keratinocyte proliferation +GO:0043618,regulation of transcription from RNA polymerase II promoter in response to stress +GO:0043619,regulation of transcription from RNA polymerase II promoter in response to oxidative stress +GO:0043620,regulation of DNA-templated transcription in response to stress +GO:0043622,cortical microtubule organization +GO:0043623,cellular protein complex assembly +GO:0043624,cellular protein complex disassembly +GO:0043627,response to estrogen +GO:0043628,ncRNA 3'-end processing +GO:0043631,RNA polyadenylation +GO:0043632,modification-dependent macromolecule catabolic process +GO:0043633,polyadenylation-dependent RNA catabolic process +GO:0043634,polyadenylation-dependent ncRNA catabolic process +GO:0043647,inositol phosphate metabolic process +GO:0043648,dicarboxylic acid metabolic process +GO:0043649,dicarboxylic acid catabolic process +GO:0043650,dicarboxylic acid biosynthetic process +GO:0043651,linoleic acid metabolic process +GO:0043652,engulfment of apoptotic cell +GO:0043653,mitochondrial fragmentation involved in apoptotic process +GO:0043654,recognition of apoptotic cell +GO:0043666,regulation of phosphoprotein phosphatase activity +GO:0043686,co-translational protein modification +GO:0043687,post-translational protein modification +GO:0043691,reverse cholesterol transport +GO:0043696,dedifferentiation +GO:0043697,cell dedifferentiation +GO:0043900,regulation of multi-organism process +GO:0043901,negative regulation of multi-organism process +GO:0043902,positive regulation of multi-organism process +GO:0043903,"regulation of symbiosis, encompassing mutualism through parasitism" +GO:0043921,modulation by host of viral transcription +GO:0043922,negative regulation by host of viral transcription +GO:0043923,positive regulation by host of viral transcription +GO:0043928,exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay +GO:0043931,ossification involved in bone maturation +GO:0043932,ossification involved in bone remodeling +GO:0043949,regulation of cAMP-mediated signaling +GO:0043950,positive regulation of cAMP-mediated signaling +GO:0043951,negative regulation of cAMP-mediated signaling +GO:0043954,cellular component maintenance +GO:0043966,histone H3 acetylation +GO:0043967,histone H4 acetylation +GO:0043968,histone H2A acetylation +GO:0043970,histone H3-K9 acetylation +GO:0043981,histone H4-K5 acetylation +GO:0043982,histone H4-K8 acetylation +GO:0043983,histone H4-K12 acetylation +GO:0043984,histone H4-K16 acetylation +GO:0043985,histone H4-R3 methylation +GO:0043987,histone H3-S10 phosphorylation +GO:0043988,histone H3-S28 phosphorylation +GO:0044003,modification by symbiont of host morphology or physiology +GO:0044004,disruption by symbiont of host cell +GO:0044026,DNA hypermethylation +GO:0044027,hypermethylation of CpG island +GO:0044030,regulation of DNA methylation +GO:0044033,multi-organism metabolic process +GO:0044034,multi-organism biosynthetic process +GO:0044036,cell wall macromolecule metabolic process +GO:0044038,cell wall macromolecule biosynthetic process +GO:0044042,glucan metabolic process +GO:0044057,regulation of system process +GO:0044058,regulation of digestive system process +GO:0044060,regulation of endocrine process +GO:0044062,regulation of excretion +GO:0044065,regulation of respiratory system process +GO:0044068,modulation by symbiont of host cellular process +GO:0044070,regulation of anion transport +GO:0044087,regulation of cellular component biogenesis +GO:0044088,regulation of vacuole organization +GO:0044089,positive regulation of cellular component biogenesis +GO:0044090,positive regulation of vacuole organization +GO:0044091,membrane biogenesis +GO:0044106,cellular amine metabolic process +GO:0044107,cellular alcohol metabolic process +GO:0044108,cellular alcohol biosynthetic process +GO:0044110,growth involved in symbiotic interaction +GO:0044116,growth of symbiont involved in interaction with host +GO:0044117,growth of symbiont in host +GO:0044126,regulation of growth of symbiont in host +GO:0044130,negative regulation of growth of symbiont in host +GO:0044144,modulation of growth of symbiont involved in interaction with host +GO:0044146,negative regulation of growth of symbiont involved in interaction with host +GO:0044154,histone H3-K14 acetylation +GO:0044179,hemolysis in other organism +GO:0044205,'de novo' UMP biosynthetic process +GO:0044206,UMP salvage +GO:0044208,'de novo' AMP biosynthetic process +GO:0044209,AMP salvage +GO:0044210,'de novo' CTP biosynthetic process +GO:0044211,CTP salvage +GO:0044236,multicellular organismal metabolic process +GO:0044240,multicellular organismal lipid catabolic process +GO:0044241,lipid digestion +GO:0044242,cellular lipid catabolic process +GO:0044243,multicellular organismal catabolic process +GO:0044245,polysaccharide digestion +GO:0044246,regulation of multicellular organismal metabolic process +GO:0044247,cellular polysaccharide catabolic process +GO:0044252,negative regulation of multicellular organismal metabolic process +GO:0044253,positive regulation of multicellular organismal metabolic process +GO:0044254,multicellular organismal protein catabolic process +GO:0044255,cellular lipid metabolic process +GO:0044256,protein digestion +GO:0044257,cellular protein catabolic process +GO:0044259,multicellular organismal macromolecule metabolic process +GO:0044262,cellular carbohydrate metabolic process +GO:0044264,cellular polysaccharide metabolic process +GO:0044265,cellular macromolecule catabolic process +GO:0044266,multicellular organismal macromolecule catabolic process +GO:0044268,multicellular organismal protein metabolic process +GO:0044270,cellular nitrogen compound catabolic process +GO:0044272,sulfur compound biosynthetic process +GO:0044273,sulfur compound catabolic process +GO:0044275,cellular carbohydrate catabolic process +GO:0044282,small molecule catabolic process +GO:0044283,small molecule biosynthetic process +GO:0044313,protein K6-linked deubiquitination +GO:0044314,protein K27-linked ubiquitination +GO:0044319,"wound healing, spreading of cells" +GO:0044320,cellular response to leptin stimulus +GO:0044321,response to leptin +GO:0044324,regulation of transcription involved in anterior/posterior axis specification +GO:0044331,cell-cell adhesion mediated by cadherin +GO:0044332,Wnt signaling pathway involved in dorsal/ventral axis specification +GO:0044333,Wnt signaling pathway involved in digestive tract morphogenesis +GO:0044334,canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition +GO:0044335,canonical Wnt signaling pathway involved in neural crest cell differentiation +GO:0044336,canonical Wnt signaling pathway involved in negative regulation of apoptotic process +GO:0044337,canonical Wnt signaling pathway involved in positive regulation of apoptotic process +GO:0044338,canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation +GO:0044339,canonical Wnt signaling pathway involved in osteoblast differentiation +GO:0044340,canonical Wnt signaling pathway involved in regulation of cell proliferation +GO:0044341,sodium-dependent phosphate transport +GO:0044342,type B pancreatic cell proliferation +GO:0044344,cellular response to fibroblast growth factor stimulus +GO:0044346,fibroblast apoptotic process +GO:0044351,macropinocytosis +GO:0044359,modulation of molecular function in other organism +GO:0044362,negative regulation of molecular function in other organism +GO:0044364,disruption of cells of other organism +GO:0044375,regulation of peroxisome size +GO:0044380,protein localization to cytoskeleton +GO:0044387,negative regulation of protein kinase activity by regulation of protein phosphorylation +GO:0044403,"symbiosis, encompassing mutualism through parasitism" +GO:0044406,adhesion of symbiont to host +GO:0044409,entry into host +GO:0044413,avoidance of host defenses +GO:0044415,evasion or tolerance of host defenses +GO:0044416,induction by symbiont of host defense response +GO:0044419,interspecies interaction between organisms +GO:0044458,motile cilium assembly +GO:0044531,modulation of programmed cell death in other organism +GO:0044532,modulation of apoptotic process in other organism +GO:0044533,positive regulation of apoptotic process in other organism +GO:0044539,long-chain fatty acid import +GO:0044550,secondary metabolite biosynthetic process +GO:0044557,relaxation of smooth muscle +GO:0044565,dendritic cell proliferation +GO:0044571,[2Fe-2S] cluster assembly +GO:0044597,daunorubicin metabolic process +GO:0044598,doxorubicin metabolic process +GO:0044650,adhesion of symbiont to host cell +GO:0044691,tooth eruption +GO:0044703,multi-organism reproductive process +GO:0044705,multi-organism reproductive behavior +GO:0044706,multi-multicellular organism process +GO:0044708,single-organism behavior +GO:0044712,single-organism catabolic process +GO:0044723,single-organism carbohydrate metabolic process +GO:0044724,single-organism carbohydrate catabolic process +GO:0044725,chromatin reprogramming in the zygote +GO:0044728,DNA methylation or demethylation +GO:0044743,intracellular protein transmembrane import +GO:0044744,protein targeting to nucleus +GO:0044752,response to human chorionic gonadotropin +GO:0044764,multi-organism cellular process +GO:0044766,multi-organism transport +GO:0044770,cell cycle phase transition +GO:0044772,mitotic cell cycle phase transition +GO:0044773,mitotic DNA damage checkpoint +GO:0044774,mitotic DNA integrity checkpoint +GO:0044778,meiotic DNA integrity checkpoint +GO:0044782,cilium organization +GO:0044783,G1 DNA damage checkpoint +GO:0044784,metaphase/anaphase transition of cell cycle +GO:0044786,cell cycle DNA replication +GO:0044788,modulation by host of viral process +GO:0044789,modulation by host of viral release from host cell +GO:0044791,positive regulation by host of viral release from host cell +GO:0044793,negative regulation by host of viral process +GO:0044794,positive regulation by host of viral process +GO:0044800,multi-organism membrane fusion +GO:0044801,single-organism membrane fusion +GO:0044802,single-organism membrane organization +GO:0044803,multi-organism membrane organization +GO:0044804,nucleophagy +GO:0044805,late nucleophagy +GO:0044818,mitotic G2/M transition checkpoint +GO:0044819,mitotic G1/S transition checkpoint +GO:0044821,meiotic telomere tethering at nuclear periphery +GO:0044827,modulation by host of viral genome replication +GO:0044828,negative regulation by host of viral genome replication +GO:0044829,positive regulation by host of viral genome replication +GO:0044839,cell cycle G2/M phase transition +GO:0044843,cell cycle G1/S phase transition +GO:0044845,chain elongation of O-linked mannose residue +GO:0044848,biological phase +GO:0044849,estrous cycle +GO:0044851,hair cycle phase +GO:0044854,plasma membrane raft assembly +GO:0044857,plasma membrane raft organization +GO:0044860,protein localization to plasma membrane raft +GO:0044861,protein transport into plasma membrane raft +GO:0044866,modulation by host of viral exo-alpha-sialidase activity +GO:0044867,modulation by host of viral catalytic activity +GO:0044868,modulation by host of viral molecular function +GO:0044869,negative regulation by host of viral exo-alpha-sialidase activity +GO:0044870,modulation by host of viral glycoprotein metabolic process +GO:0044871,negative regulation by host of viral glycoprotein metabolic process +GO:0044872,lipoprotein localization +GO:0045002,double-strand break repair via single-strand annealing +GO:0045003,double-strand break repair via synthesis-dependent strand annealing +GO:0045005,DNA-dependent DNA replication maintenance of fidelity +GO:0045006,DNA deamination +GO:0045007,depurination +GO:0045008,depyrimidination +GO:0045010,actin nucleation +GO:0045013,carbon catabolite repression of transcription +GO:0045014,negative regulation of transcription by glucose +GO:0045017,glycerolipid biosynthetic process +GO:0045019,negative regulation of nitric oxide biosynthetic process +GO:0045022,early endosome to late endosome transport +GO:0045023,G0 to G1 transition +GO:0045026,plasma membrane fusion +GO:0045039,protein import into mitochondrial inner membrane +GO:0045040,protein import into mitochondrial outer membrane +GO:0045041,protein import into mitochondrial intermembrane space +GO:0045046,protein import into peroxisome membrane +GO:0045047,protein targeting to ER +GO:0045048,protein insertion into ER membrane +GO:0045053,protein retention in Golgi apparatus +GO:0045054,constitutive secretory pathway +GO:0045055,regulated exocytosis +GO:0045056,transcytosis +GO:0045058,T cell selection +GO:0045059,positive thymic T cell selection +GO:0045060,negative thymic T cell selection +GO:0045061,thymic T cell selection +GO:0045063,T-helper 1 cell differentiation +GO:0045064,T-helper 2 cell differentiation +GO:0045066,regulatory T cell differentiation +GO:0045069,regulation of viral genome replication +GO:0045070,positive regulation of viral genome replication +GO:0045071,negative regulation of viral genome replication +GO:0045072,regulation of interferon-gamma biosynthetic process +GO:0045073,regulation of chemokine biosynthetic process +GO:0045074,regulation of interleukin-10 biosynthetic process +GO:0045075,regulation of interleukin-12 biosynthetic process +GO:0045076,regulation of interleukin-2 biosynthetic process +GO:0045077,negative regulation of interferon-gamma biosynthetic process +GO:0045078,positive regulation of interferon-gamma biosynthetic process +GO:0045079,negative regulation of chemokine biosynthetic process +GO:0045080,positive regulation of chemokine biosynthetic process +GO:0045082,positive regulation of interleukin-10 biosynthetic process +GO:0045084,positive regulation of interleukin-12 biosynthetic process +GO:0045085,negative regulation of interleukin-2 biosynthetic process +GO:0045086,positive regulation of interleukin-2 biosynthetic process +GO:0045088,regulation of innate immune response +GO:0045089,positive regulation of innate immune response +GO:0045091,regulation of single stranded viral RNA replication via double stranded DNA intermediate +GO:0045103,intermediate filament-based process +GO:0045104,intermediate filament cytoskeleton organization +GO:0045109,intermediate filament organization +GO:0045110,intermediate filament bundle assembly +GO:0045113,regulation of integrin biosynthetic process +GO:0045116,protein neddylation +GO:0045117,azole transport +GO:0045123,cellular extravasation +GO:0045124,regulation of bone resorption +GO:0045132,meiotic chromosome segregation +GO:0045136,development of secondary sexual characteristics +GO:0045137,development of primary sexual characteristics +GO:0045141,meiotic telomere clustering +GO:0045143,homologous chromosome segregation +GO:0045144,meiotic sister chromatid segregation +GO:0045161,neuronal ion channel clustering +GO:0045162,clustering of voltage-gated sodium channels +GO:0045163,clustering of voltage-gated potassium channels +GO:0045165,cell fate commitment +GO:0045168,cell-cell signaling involved in cell fate commitment +GO:0045175,basal protein localization +GO:0045176,apical protein localization +GO:0045185,maintenance of protein location +GO:0045187,"regulation of circadian sleep/wake cycle, sleep" +GO:0045188,"regulation of circadian sleep/wake cycle, non-REM sleep" +GO:0045190,isotype switching +GO:0045191,regulation of isotype switching +GO:0045196,establishment or maintenance of neuroblast polarity +GO:0045197,establishment or maintenance of epithelial cell apical/basal polarity +GO:0045198,establishment of epithelial cell apical/basal polarity +GO:0045199,maintenance of epithelial cell apical/basal polarity +GO:0045200,establishment of neuroblast polarity +GO:0045204,MAPK export from nucleus +GO:0045213,neurotransmitter receptor metabolic process +GO:0045214,sarcomere organization +GO:0045216,cell-cell junction organization +GO:0045217,cell-cell junction maintenance +GO:0045218,zonula adherens maintenance +GO:0045226,extracellular polysaccharide biosynthetic process +GO:0045229,external encapsulating structure organization +GO:0045292,"mRNA cis splicing, via spliceosome" +GO:0045321,leukocyte activation +GO:0045324,late endosome to vacuole transport +GO:0045329,carnitine biosynthetic process +GO:0045332,phospholipid translocation +GO:0045333,cellular respiration +GO:0045337,farnesyl diphosphate biosynthetic process +GO:0045338,farnesyl diphosphate metabolic process +GO:0045343,regulation of MHC class I biosynthetic process +GO:0045345,positive regulation of MHC class I biosynthetic process +GO:0045346,regulation of MHC class II biosynthetic process +GO:0045347,negative regulation of MHC class II biosynthetic process +GO:0045348,positive regulation of MHC class II biosynthetic process +GO:0045351,type I interferon biosynthetic process +GO:0045354,regulation of interferon-alpha biosynthetic process +GO:0045355,negative regulation of interferon-alpha biosynthetic process +GO:0045356,positive regulation of interferon-alpha biosynthetic process +GO:0045357,regulation of interferon-beta biosynthetic process +GO:0045359,positive regulation of interferon-beta biosynthetic process +GO:0045360,regulation of interleukin-1 biosynthetic process +GO:0045362,positive regulation of interleukin-1 biosynthetic process +GO:0045399,regulation of interleukin-3 biosynthetic process +GO:0045401,positive regulation of interleukin-3 biosynthetic process +GO:0045402,regulation of interleukin-4 biosynthetic process +GO:0045404,positive regulation of interleukin-4 biosynthetic process +GO:0045408,regulation of interleukin-6 biosynthetic process +GO:0045409,negative regulation of interleukin-6 biosynthetic process +GO:0045410,positive regulation of interleukin-6 biosynthetic process +GO:0045414,regulation of interleukin-8 biosynthetic process +GO:0045415,negative regulation of interleukin-8 biosynthetic process +GO:0045416,positive regulation of interleukin-8 biosynthetic process +GO:0045423,regulation of granulocyte macrophage colony-stimulating factor biosynthetic process +GO:0045425,positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process +GO:0045428,regulation of nitric oxide biosynthetic process +GO:0045429,positive regulation of nitric oxide biosynthetic process +GO:0045444,fat cell differentiation +GO:0045445,myoblast differentiation +GO:0045446,endothelial cell differentiation +GO:0045453,bone resorption +GO:0045454,cell redox homeostasis +GO:0045471,response to ethanol +GO:0045472,response to ether +GO:0045475,locomotor rhythm +GO:0045494,photoreceptor cell maintenance +GO:0045540,regulation of cholesterol biosynthetic process +GO:0045541,negative regulation of cholesterol biosynthetic process +GO:0045542,positive regulation of cholesterol biosynthetic process +GO:0045576,mast cell activation +GO:0045577,regulation of B cell differentiation +GO:0045578,negative regulation of B cell differentiation +GO:0045579,positive regulation of B cell differentiation +GO:0045580,regulation of T cell differentiation +GO:0045581,negative regulation of T cell differentiation +GO:0045582,positive regulation of T cell differentiation +GO:0045583,regulation of cytotoxic T cell differentiation +GO:0045585,positive regulation of cytotoxic T cell differentiation +GO:0045586,regulation of gamma-delta T cell differentiation +GO:0045588,positive regulation of gamma-delta T cell differentiation +GO:0045589,regulation of regulatory T cell differentiation +GO:0045590,negative regulation of regulatory T cell differentiation +GO:0045591,positive regulation of regulatory T cell differentiation +GO:0045596,negative regulation of cell differentiation +GO:0045597,positive regulation of cell differentiation +GO:0045598,regulation of fat cell differentiation +GO:0045599,negative regulation of fat cell differentiation +GO:0045600,positive regulation of fat cell differentiation +GO:0045601,regulation of endothelial cell differentiation +GO:0045602,negative regulation of endothelial cell differentiation +GO:0045603,positive regulation of endothelial cell differentiation +GO:0045604,regulation of epidermal cell differentiation +GO:0045605,negative regulation of epidermal cell differentiation +GO:0045606,positive regulation of epidermal cell differentiation +GO:0045607,regulation of auditory receptor cell differentiation +GO:0045608,negative regulation of auditory receptor cell differentiation +GO:0045616,regulation of keratinocyte differentiation +GO:0045617,negative regulation of keratinocyte differentiation +GO:0045618,positive regulation of keratinocyte differentiation +GO:0045619,regulation of lymphocyte differentiation +GO:0045620,negative regulation of lymphocyte differentiation +GO:0045621,positive regulation of lymphocyte differentiation +GO:0045622,regulation of T-helper cell differentiation +GO:0045623,negative regulation of T-helper cell differentiation +GO:0045624,positive regulation of T-helper cell differentiation +GO:0045625,regulation of T-helper 1 cell differentiation +GO:0045626,negative regulation of T-helper 1 cell differentiation +GO:0045627,positive regulation of T-helper 1 cell differentiation +GO:0045628,regulation of T-helper 2 cell differentiation +GO:0045629,negative regulation of T-helper 2 cell differentiation +GO:0045630,positive regulation of T-helper 2 cell differentiation +GO:0045631,regulation of mechanoreceptor differentiation +GO:0045632,negative regulation of mechanoreceptor differentiation +GO:0045634,regulation of melanocyte differentiation +GO:0045636,positive regulation of melanocyte differentiation +GO:0045637,regulation of myeloid cell differentiation +GO:0045638,negative regulation of myeloid cell differentiation +GO:0045639,positive regulation of myeloid cell differentiation +GO:0045643,regulation of eosinophil differentiation +GO:0045645,positive regulation of eosinophil differentiation +GO:0045646,regulation of erythrocyte differentiation +GO:0045647,negative regulation of erythrocyte differentiation +GO:0045648,positive regulation of erythrocyte differentiation +GO:0045649,regulation of macrophage differentiation +GO:0045650,negative regulation of macrophage differentiation +GO:0045651,positive regulation of macrophage differentiation +GO:0045652,regulation of megakaryocyte differentiation +GO:0045653,negative regulation of megakaryocyte differentiation +GO:0045654,positive regulation of megakaryocyte differentiation +GO:0045655,regulation of monocyte differentiation +GO:0045656,negative regulation of monocyte differentiation +GO:0045657,positive regulation of monocyte differentiation +GO:0045658,regulation of neutrophil differentiation +GO:0045659,negative regulation of neutrophil differentiation +GO:0045661,regulation of myoblast differentiation +GO:0045662,negative regulation of myoblast differentiation +GO:0045663,positive regulation of myoblast differentiation +GO:0045664,regulation of neuron differentiation +GO:0045665,negative regulation of neuron differentiation +GO:0045666,positive regulation of neuron differentiation +GO:0045667,regulation of osteoblast differentiation +GO:0045668,negative regulation of osteoblast differentiation +GO:0045669,positive regulation of osteoblast differentiation +GO:0045670,regulation of osteoclast differentiation +GO:0045671,negative regulation of osteoclast differentiation +GO:0045672,positive regulation of osteoclast differentiation +GO:0045682,regulation of epidermis development +GO:0045683,negative regulation of epidermis development +GO:0045684,positive regulation of epidermis development +GO:0045685,regulation of glial cell differentiation +GO:0045686,negative regulation of glial cell differentiation +GO:0045687,positive regulation of glial cell differentiation +GO:0045714,regulation of low-density lipoprotein particle receptor biosynthetic process +GO:0045715,negative regulation of low-density lipoprotein particle receptor biosynthetic process +GO:0045716,positive regulation of low-density lipoprotein particle receptor biosynthetic process +GO:0045717,negative regulation of fatty acid biosynthetic process +GO:0045719,negative regulation of glycogen biosynthetic process +GO:0045721,negative regulation of gluconeogenesis +GO:0045722,positive regulation of gluconeogenesis +GO:0045723,positive regulation of fatty acid biosynthetic process +GO:0045724,positive regulation of cilium assembly +GO:0045725,positive regulation of glycogen biosynthetic process +GO:0045726,positive regulation of integrin biosynthetic process +GO:0045727,positive regulation of translation +GO:0045730,respiratory burst +GO:0045732,positive regulation of protein catabolic process +GO:0045736,negative regulation of cyclin-dependent protein serine/threonine kinase activity +GO:0045737,positive regulation of cyclin-dependent protein serine/threonine kinase activity +GO:0045738,negative regulation of DNA repair +GO:0045739,positive regulation of DNA repair +GO:0045740,positive regulation of DNA replication +GO:0045741,positive regulation of epidermal growth factor-activated receptor activity +GO:0045742,positive regulation of epidermal growth factor receptor signaling pathway +GO:0045743,positive regulation of fibroblast growth factor receptor signaling pathway +GO:0045744,negative regulation of G-protein coupled receptor protein signaling pathway +GO:0045745,positive regulation of G-protein coupled receptor protein signaling pathway +GO:0045746,negative regulation of Notch signaling pathway +GO:0045747,positive regulation of Notch signaling pathway +GO:0045759,negative regulation of action potential +GO:0045760,positive regulation of action potential +GO:0045761,regulation of adenylate cyclase activity +GO:0045762,positive regulation of adenylate cyclase activity +GO:0045763,negative regulation of cellular amino acid metabolic process +GO:0045764,positive regulation of cellular amino acid metabolic process +GO:0045765,regulation of angiogenesis +GO:0045766,positive regulation of angiogenesis +GO:0045773,positive regulation of axon extension +GO:0045776,negative regulation of blood pressure +GO:0045777,positive regulation of blood pressure +GO:0045778,positive regulation of ossification +GO:0045779,negative regulation of bone resorption +GO:0045780,positive regulation of bone resorption +GO:0045785,positive regulation of cell adhesion +GO:0045786,negative regulation of cell cycle +GO:0045787,positive regulation of cell cycle +GO:0045792,negative regulation of cell size +GO:0045793,positive regulation of cell size +GO:0045794,negative regulation of cell volume +GO:0045796,negative regulation of intestinal cholesterol absorption +GO:0045799,positive regulation of chromatin assembly or disassembly +GO:0045806,negative regulation of endocytosis +GO:0045807,positive regulation of endocytosis +GO:0045814,"negative regulation of gene expression, epigenetic" +GO:0045815,"positive regulation of gene expression, epigenetic" +GO:0045818,negative regulation of glycogen catabolic process +GO:0045819,positive regulation of glycogen catabolic process +GO:0045820,negative regulation of glycolytic process +GO:0045821,positive regulation of glycolytic process +GO:0045822,negative regulation of heart contraction +GO:0045823,positive regulation of heart contraction +GO:0045824,negative regulation of innate immune response +GO:0045829,negative regulation of isotype switching +GO:0045830,positive regulation of isotype switching +GO:0045833,negative regulation of lipid metabolic process +GO:0045834,positive regulation of lipid metabolic process +GO:0045835,negative regulation of meiotic nuclear division +GO:0045836,positive regulation of meiotic nuclear division +GO:0045837,negative regulation of membrane potential +GO:0045838,positive regulation of membrane potential +GO:0045839,negative regulation of mitotic nuclear division +GO:0045840,positive regulation of mitotic nuclear division +GO:0045841,negative regulation of mitotic metaphase/anaphase transition +GO:0045842,positive regulation of mitotic metaphase/anaphase transition +GO:0045843,negative regulation of striated muscle tissue development +GO:0045844,positive regulation of striated muscle tissue development +GO:0045851,pH reduction +GO:0045852,pH elevation +GO:0045859,regulation of protein kinase activity +GO:0045860,positive regulation of protein kinase activity +GO:0045861,negative regulation of proteolysis +GO:0045862,positive regulation of proteolysis +GO:0045869,negative regulation of single stranded viral RNA replication via double stranded DNA intermediate +GO:0045872,positive regulation of rhodopsin gene expression +GO:0045875,negative regulation of sister chromatid cohesion +GO:0045876,positive regulation of sister chromatid cohesion +GO:0045879,negative regulation of smoothened signaling pathway +GO:0045880,positive regulation of smoothened signaling pathway +GO:0045896,regulation of transcription during mitosis +GO:0045897,positive regulation of transcription during mitosis +GO:0045898,regulation of RNA polymerase II transcriptional preinitiation complex assembly +GO:0045899,positive regulation of RNA polymerase II transcriptional preinitiation complex assembly +GO:0045900,negative regulation of translational elongation +GO:0045901,positive regulation of translational elongation +GO:0045905,positive regulation of translational termination +GO:0045906,negative regulation of vasoconstriction +GO:0045907,positive regulation of vasoconstriction +GO:0045908,negative regulation of vasodilation +GO:0045909,positive regulation of vasodilation +GO:0045910,negative regulation of DNA recombination +GO:0045911,positive regulation of DNA recombination +GO:0045912,negative regulation of carbohydrate metabolic process +GO:0045913,positive regulation of carbohydrate metabolic process +GO:0045914,negative regulation of catecholamine metabolic process +GO:0045915,positive regulation of catecholamine metabolic process +GO:0045916,negative regulation of complement activation +GO:0045917,positive regulation of complement activation +GO:0045918,negative regulation of cytolysis +GO:0045919,positive regulation of cytolysis +GO:0045920,negative regulation of exocytosis +GO:0045921,positive regulation of exocytosis +GO:0045922,negative regulation of fatty acid metabolic process +GO:0045923,positive regulation of fatty acid metabolic process +GO:0045924,regulation of female receptivity +GO:0045925,positive regulation of female receptivity +GO:0045926,negative regulation of growth +GO:0045927,positive regulation of growth +GO:0045930,negative regulation of mitotic cell cycle +GO:0045931,positive regulation of mitotic cell cycle +GO:0045932,negative regulation of muscle contraction +GO:0045933,positive regulation of muscle contraction +GO:0045936,negative regulation of phosphate metabolic process +GO:0045938,"positive regulation of circadian sleep/wake cycle, sleep" +GO:0045939,negative regulation of steroid metabolic process +GO:0045940,positive regulation of steroid metabolic process +GO:0045943,positive regulation of transcription from RNA polymerase I promoter +GO:0045945,positive regulation of transcription from RNA polymerase III promoter +GO:0045947,negative regulation of translational initiation +GO:0045948,positive regulation of translational initiation +GO:0045950,negative regulation of mitotic recombination +GO:0045953,negative regulation of natural killer cell mediated cytotoxicity +GO:0045954,positive regulation of natural killer cell mediated cytotoxicity +GO:0045955,negative regulation of calcium ion-dependent exocytosis +GO:0045956,positive regulation of calcium ion-dependent exocytosis +GO:0045957,"negative regulation of complement activation, alternative pathway" +GO:0045959,"negative regulation of complement activation, classical pathway" +GO:0045963,negative regulation of dopamine metabolic process +GO:0045964,positive regulation of dopamine metabolic process +GO:0045974,"regulation of translation, ncRNA-mediated" +GO:0045976,"negative regulation of mitotic cell cycle, embryonic" +GO:0045978,negative regulation of nucleoside metabolic process +GO:0045979,positive regulation of nucleoside metabolic process +GO:0045980,negative regulation of nucleotide metabolic process +GO:0045981,positive regulation of nucleotide metabolic process +GO:0045986,negative regulation of smooth muscle contraction +GO:0045987,positive regulation of smooth muscle contraction +GO:0045988,negative regulation of striated muscle contraction +GO:0045989,positive regulation of striated muscle contraction +GO:0045990,carbon catabolite regulation of transcription +GO:0045991,carbon catabolite activation of transcription +GO:0045992,negative regulation of embryonic development +GO:0045994,positive regulation of translational initiation by iron +GO:0045995,regulation of embryonic development +GO:0046005,"positive regulation of circadian sleep/wake cycle, REM sleep" +GO:0046006,regulation of activated T cell proliferation +GO:0046007,negative regulation of activated T cell proliferation +GO:0046010,"positive regulation of circadian sleep/wake cycle, non-REM sleep" +GO:0046013,regulation of T cell homeostatic proliferation +GO:0046015,regulation of transcription by glucose +GO:0046016,positive regulation of transcription by glucose +GO:0046021,"regulation of transcription from RNA polymerase II promoter, mitotic" +GO:0046022,positive regulation of transcription from RNA polymerase II promoter during mitosis +GO:0046031,ADP metabolic process +GO:0046033,AMP metabolic process +GO:0046034,ATP metabolic process +GO:0046036,CTP metabolic process +GO:0046037,GMP metabolic process +GO:0046039,GTP metabolic process +GO:0046040,IMP metabolic process +GO:0046041,ITP metabolic process +GO:0046049,UMP metabolic process +GO:0046051,UTP metabolic process +GO:0046056,dADP metabolic process +GO:0046058,cAMP metabolic process +GO:0046060,dATP metabolic process +GO:0046061,dATP catabolic process +GO:0046066,dGDP metabolic process +GO:0046068,cGMP metabolic process +GO:0046069,cGMP catabolic process +GO:0046070,dGTP metabolic process +GO:0046072,dTDP metabolic process +GO:0046073,dTMP metabolic process +GO:0046075,dTTP metabolic process +GO:0046077,dUDP metabolic process +GO:0046078,dUMP metabolic process +GO:0046080,dUTP metabolic process +GO:0046083,adenine metabolic process +GO:0046084,adenine biosynthetic process +GO:0046085,adenosine metabolic process +GO:0046087,cytidine metabolic process +GO:0046098,guanine metabolic process +GO:0046100,hypoxanthine metabolic process +GO:0046101,hypoxanthine biosynthetic process +GO:0046102,inosine metabolic process +GO:0046103,inosine biosynthetic process +GO:0046104,thymidine metabolic process +GO:0046108,uridine metabolic process +GO:0046110,xanthine metabolic process +GO:0046112,nucleobase biosynthetic process +GO:0046113,nucleobase catabolic process +GO:0046116,queuosine metabolic process +GO:0046121,deoxyribonucleoside catabolic process +GO:0046122,purine deoxyribonucleoside metabolic process +GO:0046125,pyrimidine deoxyribonucleoside metabolic process +GO:0046128,purine ribonucleoside metabolic process +GO:0046129,purine ribonucleoside biosynthetic process +GO:0046130,purine ribonucleoside catabolic process +GO:0046131,pyrimidine ribonucleoside metabolic process +GO:0046132,pyrimidine ribonucleoside biosynthetic process +GO:0046133,pyrimidine ribonucleoside catabolic process +GO:0046134,pyrimidine nucleoside biosynthetic process +GO:0046135,pyrimidine nucleoside catabolic process +GO:0046136,positive regulation of vitamin metabolic process +GO:0046137,negative regulation of vitamin metabolic process +GO:0046146,tetrahydrobiopterin metabolic process +GO:0046148,pigment biosynthetic process +GO:0046149,pigment catabolic process +GO:0046160,heme a metabolic process +GO:0046164,alcohol catabolic process +GO:0046165,alcohol biosynthetic process +GO:0046166,glyceraldehyde-3-phosphate biosynthetic process +GO:0046167,glycerol-3-phosphate biosynthetic process +GO:0046168,glycerol-3-phosphate catabolic process +GO:0046173,polyol biosynthetic process +GO:0046174,polyol catabolic process +GO:0046184,aldehyde biosynthetic process +GO:0046185,aldehyde catabolic process +GO:0046189,phenol-containing compound biosynthetic process +GO:0046203,spermidine catabolic process +GO:0046208,spermine catabolic process +GO:0046209,nitric oxide metabolic process +GO:0046218,indolalkylamine catabolic process +GO:0046219,indolalkylamine biosynthetic process +GO:0046226,coumarin catabolic process +GO:0046271,phenylpropanoid catabolic process +GO:0046292,formaldehyde metabolic process +GO:0046294,formaldehyde catabolic process +GO:0046320,regulation of fatty acid oxidation +GO:0046321,positive regulation of fatty acid oxidation +GO:0046322,negative regulation of fatty acid oxidation +GO:0046323,glucose import +GO:0046324,regulation of glucose import +GO:0046325,negative regulation of glucose import +GO:0046326,positive regulation of glucose import +GO:0046328,regulation of JNK cascade +GO:0046329,negative regulation of JNK cascade +GO:0046330,positive regulation of JNK cascade +GO:0046331,lateral inhibition +GO:0046337,phosphatidylethanolamine metabolic process +GO:0046338,phosphatidylethanolamine catabolic process +GO:0046339,diacylglycerol metabolic process +GO:0046340,diacylglycerol catabolic process +GO:0046341,CDP-diacylglycerol metabolic process +GO:0046348,amino sugar catabolic process +GO:0046349,amino sugar biosynthetic process +GO:0046351,disaccharide biosynthetic process +GO:0046364,monosaccharide biosynthetic process +GO:0046365,monosaccharide catabolic process +GO:0046368,GDP-L-fucose metabolic process +GO:0046370,fructose biosynthetic process +GO:0046373,L-arabinose metabolic process +GO:0046379,extracellular polysaccharide metabolic process +GO:0046385,deoxyribose phosphate biosynthetic process +GO:0046386,deoxyribose phosphate catabolic process +GO:0046390,ribose phosphate biosynthetic process +GO:0046391,5-phosphoribose 1-diphosphate metabolic process +GO:0046394,carboxylic acid biosynthetic process +GO:0046395,carboxylic acid catabolic process +GO:0046398,UDP-glucuronate metabolic process +GO:0046415,urate metabolic process +GO:0046416,D-amino acid metabolic process +GO:0046425,regulation of JAK-STAT cascade +GO:0046426,negative regulation of JAK-STAT cascade +GO:0046427,positive regulation of JAK-STAT cascade +GO:0046434,organophosphate catabolic process +GO:0046439,L-cysteine metabolic process +GO:0046440,L-lysine metabolic process +GO:0046449,creatinine metabolic process +GO:0046452,dihydrofolate metabolic process +GO:0046456,icosanoid biosynthetic process +GO:0046457,prostanoid biosynthetic process +GO:0046459,short-chain fatty acid metabolic process +GO:0046460,neutral lipid biosynthetic process +GO:0046461,neutral lipid catabolic process +GO:0046463,acylglycerol biosynthetic process +GO:0046464,acylglycerol catabolic process +GO:0046465,dolichyl diphosphate metabolic process +GO:0046466,membrane lipid catabolic process +GO:0046467,membrane lipid biosynthetic process +GO:0046469,platelet activating factor metabolic process +GO:0046470,phosphatidylcholine metabolic process +GO:0046471,phosphatidylglycerol metabolic process +GO:0046473,phosphatidic acid metabolic process +GO:0046474,glycerophospholipid biosynthetic process +GO:0046475,glycerophospholipid catabolic process +GO:0046476,glycosylceramide biosynthetic process +GO:0046477,glycosylceramide catabolic process +GO:0046479,glycosphingolipid catabolic process +GO:0046485,ether lipid metabolic process +GO:0046486,glycerolipid metabolic process +GO:0046487,glyoxylate metabolic process +GO:0046488,phosphatidylinositol metabolic process +GO:0046490,isopentenyl diphosphate metabolic process +GO:0046496,nicotinamide nucleotide metabolic process +GO:0046498,S-adenosylhomocysteine metabolic process +GO:0046499,S-adenosylmethioninamine metabolic process +GO:0046500,S-adenosylmethionine metabolic process +GO:0046501,protoporphyrinogen IX metabolic process +GO:0046502,uroporphyrinogen III metabolic process +GO:0046503,glycerolipid catabolic process +GO:0046504,glycerol ether biosynthetic process +GO:0046511,sphinganine biosynthetic process +GO:0046512,sphingosine biosynthetic process +GO:0046513,ceramide biosynthetic process +GO:0046514,ceramide catabolic process +GO:0046519,sphingoid metabolic process +GO:0046520,sphingoid biosynthetic process +GO:0046530,photoreceptor cell differentiation +GO:0046532,regulation of photoreceptor cell differentiation +GO:0046533,negative regulation of photoreceptor cell differentiation +GO:0046541,saliva secretion +GO:0046543,development of secondary female sexual characteristics +GO:0046544,development of secondary male sexual characteristics +GO:0046545,development of primary female sexual characteristics +GO:0046546,development of primary male sexual characteristics +GO:0046548,retinal rod cell development +GO:0046549,retinal cone cell development +GO:0046552,photoreceptor cell fate commitment +GO:0046578,regulation of Ras protein signal transduction +GO:0046579,positive regulation of Ras protein signal transduction +GO:0046580,negative regulation of Ras protein signal transduction +GO:0046586,regulation of calcium-dependent cell-cell adhesion +GO:0046596,regulation of viral entry into host cell +GO:0046597,negative regulation of viral entry into host cell +GO:0046598,positive regulation of viral entry into host cell +GO:0046599,regulation of centriole replication +GO:0046600,negative regulation of centriole replication +GO:0046601,positive regulation of centriole replication +GO:0046602,regulation of mitotic centrosome separation +GO:0046605,regulation of centrosome cycle +GO:0046606,negative regulation of centrosome cycle +GO:0046607,positive regulation of centrosome cycle +GO:0046619,optic placode formation involved in camera-type eye formation +GO:0046620,regulation of organ growth +GO:0046621,negative regulation of organ growth +GO:0046622,positive regulation of organ growth +GO:0046626,regulation of insulin receptor signaling pathway +GO:0046627,negative regulation of insulin receptor signaling pathway +GO:0046628,positive regulation of insulin receptor signaling pathway +GO:0046629,gamma-delta T cell activation +GO:0046631,alpha-beta T cell activation +GO:0046632,alpha-beta T cell differentiation +GO:0046633,alpha-beta T cell proliferation +GO:0046634,regulation of alpha-beta T cell activation +GO:0046635,positive regulation of alpha-beta T cell activation +GO:0046636,negative regulation of alpha-beta T cell activation +GO:0046637,regulation of alpha-beta T cell differentiation +GO:0046638,positive regulation of alpha-beta T cell differentiation +GO:0046639,negative regulation of alpha-beta T cell differentiation +GO:0046640,regulation of alpha-beta T cell proliferation +GO:0046641,positive regulation of alpha-beta T cell proliferation +GO:0046642,negative regulation of alpha-beta T cell proliferation +GO:0046643,regulation of gamma-delta T cell activation +GO:0046645,positive regulation of gamma-delta T cell activation +GO:0046649,lymphocyte activation +GO:0046651,lymphocyte proliferation +GO:0046653,tetrahydrofolate metabolic process +GO:0046654,tetrahydrofolate biosynthetic process +GO:0046655,folic acid metabolic process +GO:0046660,female sex differentiation +GO:0046661,male sex differentiation +GO:0046666,retinal cell programmed cell death +GO:0046668,regulation of retinal cell programmed cell death +GO:0046676,negative regulation of insulin secretion +GO:0046677,response to antibiotic +GO:0046683,response to organophosphorus +GO:0046684,response to pyrethroid +GO:0046685,response to arsenic-containing substance +GO:0046686,response to cadmium ion +GO:0046688,response to copper ion +GO:0046689,response to mercury ion +GO:0046697,decidualization +GO:0046700,heterocycle catabolic process +GO:0046707,IDP metabolic process +GO:0046709,IDP catabolic process +GO:0046710,GDP metabolic process +GO:0046716,muscle cell cellular homeostasis +GO:0046717,acid secretion +GO:0046718,viral entry into host cell +GO:0046719,regulation by virus of viral protein levels in host cell +GO:0046724,oxalic acid secretion +GO:0046725,negative regulation by virus of viral protein levels in host cell +GO:0046726,positive regulation by virus of viral protein levels in host cell +GO:0046730,induction of host immune response by virus +GO:0046732,active induction of host immune response by virus +GO:0046755,viral budding +GO:0046777,protein autophosphorylation +GO:0046778,modification by virus of host mRNA processing +GO:0046782,regulation of viral transcription +GO:0046784,viral mRNA export from host cell nucleus +GO:0046785,microtubule polymerization +GO:0046794,transport of virus +GO:0046813,receptor-mediated virion attachment to host cell +GO:0046822,regulation of nucleocytoplasmic transport +GO:0046823,negative regulation of nucleocytoplasmic transport +GO:0046824,positive regulation of nucleocytoplasmic transport +GO:0046825,regulation of protein export from nucleus +GO:0046826,negative regulation of protein export from nucleus +GO:0046827,positive regulation of protein export from nucleus +GO:0046831,regulation of RNA export from nucleus +GO:0046832,negative regulation of RNA export from nucleus +GO:0046833,positive regulation of RNA export from nucleus +GO:0046834,lipid phosphorylation +GO:0046835,carbohydrate phosphorylation +GO:0046836,glycolipid transport +GO:0046838,phosphorylated carbohydrate dephosphorylation +GO:0046839,phospholipid dephosphorylation +GO:0046847,filopodium assembly +GO:0046849,bone remodeling +GO:0046850,regulation of bone remodeling +GO:0046851,negative regulation of bone remodeling +GO:0046852,positive regulation of bone remodeling +GO:0046854,phosphatidylinositol phosphorylation +GO:0046855,inositol phosphate dephosphorylation +GO:0046856,phosphatidylinositol dephosphorylation +GO:0046874,quinolinate metabolic process +GO:0046877,regulation of saliva secretion +GO:0046878,positive regulation of saliva secretion +GO:0046879,hormone secretion +GO:0046880,regulation of follicle-stimulating hormone secretion +GO:0046881,positive regulation of follicle-stimulating hormone secretion +GO:0046882,negative regulation of follicle-stimulating hormone secretion +GO:0046883,regulation of hormone secretion +GO:0046885,regulation of hormone biosynthetic process +GO:0046886,positive regulation of hormone biosynthetic process +GO:0046887,positive regulation of hormone secretion +GO:0046888,negative regulation of hormone secretion +GO:0046889,positive regulation of lipid biosynthetic process +GO:0046890,regulation of lipid biosynthetic process +GO:0046898,response to cycloheximide +GO:0046900,tetrahydrofolylpolyglutamate metabolic process +GO:0046902,regulation of mitochondrial membrane permeability +GO:0046903,secretion +GO:0046909,intermembrane transport +GO:0046916,cellular transition metal ion homeostasis +GO:0046928,regulation of neurotransmitter secretion +GO:0046929,negative regulation of neurotransmitter secretion +GO:0046931,pore complex assembly +GO:0046939,nucleotide phosphorylation +GO:0046940,nucleoside monophosphate phosphorylation +GO:0046942,carboxylic acid transport +GO:0046949,fatty-acyl-CoA biosynthetic process +GO:0046950,cellular ketone body metabolic process +GO:0046951,ketone body biosynthetic process +GO:0046952,ketone body catabolic process +GO:0046958,nonassociative learning +GO:0046959,habituation +GO:0046960,sensitization +GO:0046967,cytosol to ER transport +GO:0046968,peptide antigen transport +GO:0046984,regulation of hemoglobin biosynthetic process +GO:0046985,positive regulation of hemoglobin biosynthetic process +GO:0047484,regulation of response to osmotic stress +GO:0047496,vesicle transport along microtubule +GO:0047497,mitochondrion transport along microtubule +GO:0048002,antigen processing and presentation of peptide antigen +GO:0048003,antigen processing and presentation of lipid antigen via MHC class Ib +GO:0048007,"antigen processing and presentation, exogenous lipid antigen via MHC class Ib" +GO:0048008,platelet-derived growth factor receptor signaling pathway +GO:0048009,insulin-like growth factor receptor signaling pathway +GO:0048010,vascular endothelial growth factor receptor signaling pathway +GO:0048011,neurotrophin TRK receptor signaling pathway +GO:0048012,hepatocyte growth factor receptor signaling pathway +GO:0048013,ephrin receptor signaling pathway +GO:0048014,Tie signaling pathway +GO:0048015,phosphatidylinositol-mediated signaling +GO:0048016,inositol phosphate-mediated signaling +GO:0048017,inositol lipid-mediated signaling +GO:0048021,regulation of melanin biosynthetic process +GO:0048022,negative regulation of melanin biosynthetic process +GO:0048023,positive regulation of melanin biosynthetic process +GO:0048024,"regulation of mRNA splicing, via spliceosome" +GO:0048025,"negative regulation of mRNA splicing, via spliceosome" +GO:0048026,"positive regulation of mRNA splicing, via spliceosome" +GO:0048041,focal adhesion assembly +GO:0048048,embryonic eye morphogenesis +GO:0048050,post-embryonic eye morphogenesis +GO:0048066,developmental pigmentation +GO:0048069,eye pigmentation +GO:0048070,regulation of developmental pigmentation +GO:0048073,regulation of eye pigmentation +GO:0048087,positive regulation of developmental pigmentation +GO:0048096,chromatin-mediated maintenance of transcription +GO:0048102,autophagic cell death +GO:0048103,somatic stem cell division +GO:0048104,establishment of body hair or bristle planar orientation +GO:0048105,establishment of body hair planar orientation +GO:0048133,male germ-line stem cell asymmetric division +GO:0048143,astrocyte activation +GO:0048144,fibroblast proliferation +GO:0048145,regulation of fibroblast proliferation +GO:0048146,positive regulation of fibroblast proliferation +GO:0048147,negative regulation of fibroblast proliferation +GO:0048148,behavioral response to cocaine +GO:0048149,behavioral response to ethanol +GO:0048162,multi-layer follicle stage +GO:0048165,fused antrum stage +GO:0048167,regulation of synaptic plasticity +GO:0048168,regulation of neuronal synaptic plasticity +GO:0048169,regulation of long-term neuronal synaptic plasticity +GO:0048170,positive regulation of long-term neuronal synaptic plasticity +GO:0048172,regulation of short-term neuronal synaptic plasticity +GO:0048193,Golgi vesicle transport +GO:0048194,Golgi vesicle budding +GO:0048199,"vesicle targeting, to, from or within Golgi" +GO:0048200,Golgi transport vesicle coating +GO:0048203,"vesicle targeting, trans-Golgi to endosome" +GO:0048205,COPI coating of Golgi vesicle +GO:0048207,"vesicle targeting, rough ER to cis-Golgi" +GO:0048208,COPII vesicle coating +GO:0048210,Golgi vesicle fusion to target membrane +GO:0048211,Golgi vesicle docking +GO:0048213,Golgi vesicle prefusion complex stabilization +GO:0048227,plasma membrane to endosome transport +GO:0048232,male gamete generation +GO:0048239,negative regulation of DNA recombination at telomere +GO:0048240,sperm capacitation +GO:0048241,epinephrine transport +GO:0048245,eosinophil chemotaxis +GO:0048246,macrophage chemotaxis +GO:0048247,lymphocyte chemotaxis +GO:0048251,elastic fiber assembly +GO:0048254,snoRNA localization +GO:0048255,mRNA stabilization +GO:0048259,regulation of receptor-mediated endocytosis +GO:0048260,positive regulation of receptor-mediated endocytosis +GO:0048261,negative regulation of receptor-mediated endocytosis +GO:0048262,determination of dorsal/ventral asymmetry +GO:0048263,determination of dorsal identity +GO:0048265,response to pain +GO:0048266,behavioral response to pain +GO:0048268,clathrin coat assembly +GO:0048278,vesicle docking +GO:0048280,vesicle fusion with Golgi apparatus +GO:0048284,organelle fusion +GO:0048285,organelle fission +GO:0048286,lung alveolus development +GO:0048293,regulation of isotype switching to IgE isotypes +GO:0048294,negative regulation of isotype switching to IgE isotypes +GO:0048295,positive regulation of isotype switching to IgE isotypes +GO:0048296,regulation of isotype switching to IgA isotypes +GO:0048298,positive regulation of isotype switching to IgA isotypes +GO:0048302,regulation of isotype switching to IgG isotypes +GO:0048304,positive regulation of isotype switching to IgG isotypes +GO:0048305,immunoglobulin secretion +GO:0048308,organelle inheritance +GO:0048311,mitochondrion distribution +GO:0048312,intracellular distribution of mitochondria +GO:0048313,Golgi inheritance +GO:0048318,axial mesoderm development +GO:0048319,axial mesoderm morphogenesis +GO:0048320,axial mesoderm formation +GO:0048332,mesoderm morphogenesis +GO:0048333,mesodermal cell differentiation +GO:0048339,paraxial mesoderm development +GO:0048340,paraxial mesoderm morphogenesis +GO:0048341,paraxial mesoderm formation +GO:0048342,paraxial mesodermal cell differentiation +GO:0048343,paraxial mesodermal cell fate commitment +GO:0048368,lateral mesoderm development +GO:0048378,regulation of lateral mesodermal cell fate specification +GO:0048382,mesendoderm development +GO:0048384,retinoic acid receptor signaling pathway +GO:0048385,regulation of retinoic acid receptor signaling pathway +GO:0048386,positive regulation of retinoic acid receptor signaling pathway +GO:0048387,negative regulation of retinoic acid receptor signaling pathway +GO:0048388,endosomal lumen acidification +GO:0048389,intermediate mesoderm development +GO:0048469,cell maturation +GO:0048477,oogenesis +GO:0048478,replication fork protection +GO:0048483,autonomic nervous system development +GO:0048484,enteric nervous system development +GO:0048485,sympathetic nervous system development +GO:0048486,parasympathetic nervous system development +GO:0048488,synaptic vesicle endocytosis +GO:0048489,synaptic vesicle transport +GO:0048490,anterograde synaptic vesicle transport +GO:0048496,maintenance of organ identity +GO:0048499,synaptic vesicle membrane organization +GO:0048505,regulation of timing of cell differentiation +GO:0048511,rhythmic process +GO:0048512,circadian behavior +GO:0048514,blood vessel morphogenesis +GO:0048515,spermatid differentiation +GO:0048520,positive regulation of behavior +GO:0048521,negative regulation of behavior +GO:0048524,positive regulation of viral process +GO:0048525,negative regulation of viral process +GO:0048532,anatomical structure arrangement +GO:0048534,hematopoietic or lymphoid organ development +GO:0048535,lymph node development +GO:0048536,spleen development +GO:0048537,mucosal-associated lymphoid tissue development +GO:0048538,thymus development +GO:0048539,bone marrow development +GO:0048541,Peyer's patch development +GO:0048545,response to steroid hormone +GO:0048546,digestive tract morphogenesis +GO:0048548,regulation of pinocytosis +GO:0048549,positive regulation of pinocytosis +GO:0048550,negative regulation of pinocytosis +GO:0048552,regulation of metalloenzyme activity +GO:0048553,negative regulation of metalloenzyme activity +GO:0048554,positive regulation of metalloenzyme activity +GO:0048557,embryonic digestive tract morphogenesis +GO:0048560,establishment of anatomical structure orientation +GO:0048562,embryonic organ morphogenesis +GO:0048563,post-embryonic organ morphogenesis +GO:0048565,digestive tract development +GO:0048566,embryonic digestive tract development +GO:0048568,embryonic organ development +GO:0048569,post-embryonic organ development +GO:0048570,notochord morphogenesis +GO:0048588,developmental cell growth +GO:0048589,developmental growth +GO:0048592,eye morphogenesis +GO:0048593,camera-type eye morphogenesis +GO:0048596,embryonic camera-type eye morphogenesis +GO:0048597,post-embryonic camera-type eye morphogenesis +GO:0048598,embryonic morphogenesis +GO:0048599,oocyte development +GO:0048608,reproductive structure development +GO:0048609,multicellular organismal reproductive process +GO:0048611,embryonic ectodermal digestive tract development +GO:0048617,embryonic foregut morphogenesis +GO:0048619,embryonic hindgut morphogenesis +GO:0048625,myoblast fate commitment +GO:0048627,myoblast development +GO:0048630,skeletal muscle tissue growth +GO:0048631,regulation of skeletal muscle tissue growth +GO:0048633,positive regulation of skeletal muscle tissue growth +GO:0048634,regulation of muscle organ development +GO:0048635,negative regulation of muscle organ development +GO:0048636,positive regulation of muscle organ development +GO:0048638,regulation of developmental growth +GO:0048639,positive regulation of developmental growth +GO:0048640,negative regulation of developmental growth +GO:0048641,regulation of skeletal muscle tissue development +GO:0048642,negative regulation of skeletal muscle tissue development +GO:0048643,positive regulation of skeletal muscle tissue development +GO:0048644,muscle organ morphogenesis +GO:0048645,organ formation +GO:0048646,anatomical structure formation involved in morphogenesis +GO:0048659,smooth muscle cell proliferation +GO:0048660,regulation of smooth muscle cell proliferation +GO:0048661,positive regulation of smooth muscle cell proliferation +GO:0048662,negative regulation of smooth muscle cell proliferation +GO:0048663,neuron fate commitment +GO:0048664,neuron fate determination +GO:0048665,neuron fate specification +GO:0048667,cell morphogenesis involved in neuron differentiation +GO:0048668,collateral sprouting +GO:0048669,collateral sprouting in absence of injury +GO:0048670,regulation of collateral sprouting +GO:0048671,negative regulation of collateral sprouting +GO:0048672,positive regulation of collateral sprouting +GO:0048675,axon extension +GO:0048678,response to axon injury +GO:0048679,regulation of axon regeneration +GO:0048680,positive regulation of axon regeneration +GO:0048681,negative regulation of axon regeneration +GO:0048683,regulation of collateral sprouting of intact axon in response to injury +GO:0048686,regulation of sprouting of injured axon +GO:0048690,regulation of axon extension involved in regeneration +GO:0048696,regulation of collateral sprouting in absence of injury +GO:0048697,positive regulation of collateral sprouting in absence of injury +GO:0048701,embryonic cranial skeleton morphogenesis +GO:0048702,embryonic neurocranium morphogenesis +GO:0048703,embryonic viscerocranium morphogenesis +GO:0048704,embryonic skeletal system morphogenesis +GO:0048705,skeletal system morphogenesis +GO:0048706,embryonic skeletal system development +GO:0048708,astrocyte differentiation +GO:0048709,oligodendrocyte differentiation +GO:0048710,regulation of astrocyte differentiation +GO:0048711,positive regulation of astrocyte differentiation +GO:0048712,negative regulation of astrocyte differentiation +GO:0048713,regulation of oligodendrocyte differentiation +GO:0048714,positive regulation of oligodendrocyte differentiation +GO:0048715,negative regulation of oligodendrocyte differentiation +GO:0048729,tissue morphogenesis +GO:0048730,epidermis morphogenesis +GO:0048732,gland development +GO:0048733,sebaceous gland development +GO:0048736,appendage development +GO:0048738,cardiac muscle tissue development +GO:0048739,cardiac muscle fiber development +GO:0048741,skeletal muscle fiber development +GO:0048742,regulation of skeletal muscle fiber development +GO:0048743,positive regulation of skeletal muscle fiber development +GO:0048745,smooth muscle tissue development +GO:0048747,muscle fiber development +GO:0048749,compound eye development +GO:0048752,semicircular canal morphogenesis +GO:0048753,pigment granule organization +GO:0048754,branching morphogenesis of an epithelial tube +GO:0048755,branching morphogenesis of a nerve +GO:0048757,pigment granule maturation +GO:0048762,mesenchymal cell differentiation +GO:0048769,sarcomerogenesis +GO:0048771,tissue remodeling +GO:0048791,calcium ion-regulated exocytosis of neurotransmitter +GO:0048793,pronephros development +GO:0048799,organ maturation +GO:0048806,genitalia development +GO:0048807,female genitalia morphogenesis +GO:0048808,male genitalia morphogenesis +GO:0048812,neuron projection morphogenesis +GO:0048813,dendrite morphogenesis +GO:0048814,regulation of dendrite morphogenesis +GO:0048818,positive regulation of hair follicle maturation +GO:0048819,regulation of hair follicle maturation +GO:0048820,hair follicle maturation +GO:0048821,erythrocyte development +GO:0048822,enucleate erythrocyte development +GO:0048839,inner ear development +GO:0048840,otolith development +GO:0048841,regulation of axon extension involved in axon guidance +GO:0048842,positive regulation of axon extension involved in axon guidance +GO:0048843,negative regulation of axon extension involved in axon guidance +GO:0048844,artery morphogenesis +GO:0048845,venous blood vessel morphogenesis +GO:0048846,axon extension involved in axon guidance +GO:0048850,hypophysis morphogenesis +GO:0048852,diencephalon morphogenesis +GO:0048853,forebrain morphogenesis +GO:0048854,brain morphogenesis +GO:0048857,neural nucleus development +GO:0048858,cell projection morphogenesis +GO:0048859,formation of anatomical boundary +GO:0048861,leukemia inhibitory factor signaling pathway +GO:0048863,stem cell differentiation +GO:0048864,stem cell development +GO:0048865,stem cell fate commitment +GO:0048866,stem cell fate specification +GO:0048867,stem cell fate determination +GO:0048870,cell motility +GO:0048871,multicellular organismal homeostasis +GO:0048872,homeostasis of number of cells +GO:0048873,homeostasis of number of cells within a tissue +GO:0048875,chemical homeostasis within a tissue +GO:0048878,chemical homeostasis +GO:0048880,sensory system development +GO:0048934,peripheral nervous system neuron differentiation +GO:0048935,peripheral nervous system neuron development +GO:0048936,peripheral nervous system neuron axonogenesis +GO:0050000,chromosome localization +GO:0050427,3'-phosphoadenosine 5'-phosphosulfate metabolic process +GO:0050428,3'-phosphoadenosine 5'-phosphosulfate biosynthetic process +GO:0050432,catecholamine secretion +GO:0050433,regulation of catecholamine secretion +GO:0050434,positive regulation of viral transcription +GO:0050435,beta-amyloid metabolic process +GO:0050482,arachidonic acid secretion +GO:0050650,chondroitin sulfate proteoglycan biosynthetic process +GO:0050651,dermatan sulfate proteoglycan biosynthetic process +GO:0050653,"chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process" +GO:0050654,chondroitin sulfate proteoglycan metabolic process +GO:0050655,dermatan sulfate proteoglycan metabolic process +GO:0050657,nucleic acid transport +GO:0050658,RNA transport +GO:0050663,cytokine secretion +GO:0050665,hydrogen peroxide biosynthetic process +GO:0050666,regulation of homocysteine metabolic process +GO:0050667,homocysteine metabolic process +GO:0050670,regulation of lymphocyte proliferation +GO:0050671,positive regulation of lymphocyte proliferation +GO:0050672,negative regulation of lymphocyte proliferation +GO:0050673,epithelial cell proliferation +GO:0050678,regulation of epithelial cell proliferation +GO:0050679,positive regulation of epithelial cell proliferation +GO:0050680,negative regulation of epithelial cell proliferation +GO:0050684,regulation of mRNA processing +GO:0050685,positive regulation of mRNA processing +GO:0050686,negative regulation of mRNA processing +GO:0050687,negative regulation of defense response to virus +GO:0050688,regulation of defense response to virus +GO:0050689,negative regulation of defense response to virus by host +GO:0050690,regulation of defense response to virus by virus +GO:0050691,regulation of defense response to virus by host +GO:0050701,interleukin-1 secretion +GO:0050702,interleukin-1 beta secretion +GO:0050704,regulation of interleukin-1 secretion +GO:0050705,regulation of interleukin-1 alpha secretion +GO:0050706,regulation of interleukin-1 beta secretion +GO:0050707,regulation of cytokine secretion +GO:0050708,regulation of protein secretion +GO:0050709,negative regulation of protein secretion +GO:0050710,negative regulation of cytokine secretion +GO:0050711,negative regulation of interleukin-1 secretion +GO:0050713,negative regulation of interleukin-1 beta secretion +GO:0050714,positive regulation of protein secretion +GO:0050715,positive regulation of cytokine secretion +GO:0050716,positive regulation of interleukin-1 secretion +GO:0050717,positive regulation of interleukin-1 alpha secretion +GO:0050718,positive regulation of interleukin-1 beta secretion +GO:0050727,regulation of inflammatory response +GO:0050728,negative regulation of inflammatory response +GO:0050729,positive regulation of inflammatory response +GO:0050730,regulation of peptidyl-tyrosine phosphorylation +GO:0050731,positive regulation of peptidyl-tyrosine phosphorylation +GO:0050732,negative regulation of peptidyl-tyrosine phosphorylation +GO:0050746,regulation of lipoprotein metabolic process +GO:0050747,positive regulation of lipoprotein metabolic process +GO:0050748,negative regulation of lipoprotein metabolic process +GO:0050755,chemokine metabolic process +GO:0050758,regulation of thymidylate synthase biosynthetic process +GO:0050764,regulation of phagocytosis +GO:0050765,negative regulation of phagocytosis +GO:0050766,positive regulation of phagocytosis +GO:0050767,regulation of neurogenesis +GO:0050768,negative regulation of neurogenesis +GO:0050769,positive regulation of neurogenesis +GO:0050770,regulation of axonogenesis +GO:0050771,negative regulation of axonogenesis +GO:0050772,positive regulation of axonogenesis +GO:0050773,regulation of dendrite development +GO:0050774,negative regulation of dendrite morphogenesis +GO:0050775,positive regulation of dendrite morphogenesis +GO:0050776,regulation of immune response +GO:0050777,negative regulation of immune response +GO:0050778,positive regulation of immune response +GO:0050779,RNA destabilization +GO:0050792,regulation of viral process +GO:0050795,regulation of behavior +GO:0050796,regulation of insulin secretion +GO:0050798,activated T cell proliferation +GO:0050801,ion homeostasis +GO:0050802,"circadian sleep/wake cycle, sleep" +GO:0050803,regulation of synapse structure or activity +GO:0050804,modulation of synaptic transmission +GO:0050805,negative regulation of synaptic transmission +GO:0050806,positive regulation of synaptic transmission +GO:0050807,regulation of synapse organization +GO:0050808,synapse organization +GO:0050810,regulation of steroid biosynthetic process +GO:0050812,regulation of acyl-CoA biosynthetic process +GO:0050817,coagulation +GO:0050818,regulation of coagulation +GO:0050819,negative regulation of coagulation +GO:0050820,positive regulation of coagulation +GO:0050821,protein stabilization +GO:0050829,defense response to Gram-negative bacterium +GO:0050830,defense response to Gram-positive bacterium +GO:0050832,defense response to fungus +GO:0050847,progesterone receptor signaling pathway +GO:0050848,regulation of calcium-mediated signaling +GO:0050849,negative regulation of calcium-mediated signaling +GO:0050850,positive regulation of calcium-mediated signaling +GO:0050851,antigen receptor-mediated signaling pathway +GO:0050852,T cell receptor signaling pathway +GO:0050853,B cell receptor signaling pathway +GO:0050854,regulation of antigen receptor-mediated signaling pathway +GO:0050855,regulation of B cell receptor signaling pathway +GO:0050856,regulation of T cell receptor signaling pathway +GO:0050857,positive regulation of antigen receptor-mediated signaling pathway +GO:0050858,negative regulation of antigen receptor-mediated signaling pathway +GO:0050859,negative regulation of B cell receptor signaling pathway +GO:0050860,negative regulation of T cell receptor signaling pathway +GO:0050861,positive regulation of B cell receptor signaling pathway +GO:0050862,positive regulation of T cell receptor signaling pathway +GO:0050863,regulation of T cell activation +GO:0050864,regulation of B cell activation +GO:0050865,regulation of cell activation +GO:0050866,negative regulation of cell activation +GO:0050867,positive regulation of cell activation +GO:0050868,negative regulation of T cell activation +GO:0050869,negative regulation of B cell activation +GO:0050870,positive regulation of T cell activation +GO:0050871,positive regulation of B cell activation +GO:0050872,white fat cell differentiation +GO:0050873,brown fat cell differentiation +GO:0050878,regulation of body fluid levels +GO:0050879,multicellular organismal movement +GO:0050880,regulation of blood vessel size +GO:0050881,musculoskeletal movement +GO:0050882,voluntary musculoskeletal movement +GO:0050883,"musculoskeletal movement, spinal reflex action" +GO:0050884,neuromuscular process controlling posture +GO:0050885,neuromuscular process controlling balance +GO:0050886,endocrine process +GO:0050890,cognition +GO:0050891,multicellular organismal water homeostasis +GO:0050892,intestinal absorption +GO:0050893,sensory processing +GO:0050900,leukocyte migration +GO:0050901,leukocyte tethering or rolling +GO:0050902,leukocyte adhesive activation +GO:0050904,diapedesis +GO:0050905,neuromuscular process +GO:0050906,detection of stimulus involved in sensory perception +GO:0050907,detection of chemical stimulus involved in sensory perception +GO:0050908,detection of light stimulus involved in visual perception +GO:0050909,sensory perception of taste +GO:0050910,detection of mechanical stimulus involved in sensory perception of sound +GO:0050911,detection of chemical stimulus involved in sensory perception of smell +GO:0050912,detection of chemical stimulus involved in sensory perception of taste +GO:0050913,sensory perception of bitter taste +GO:0050915,sensory perception of sour taste +GO:0050916,sensory perception of sweet taste +GO:0050917,sensory perception of umami taste +GO:0050918,positive chemotaxis +GO:0050919,negative chemotaxis +GO:0050920,regulation of chemotaxis +GO:0050921,positive regulation of chemotaxis +GO:0050922,negative regulation of chemotaxis +GO:0050923,regulation of negative chemotaxis +GO:0050925,negative regulation of negative chemotaxis +GO:0050926,regulation of positive chemotaxis +GO:0050927,positive regulation of positive chemotaxis +GO:0050930,induction of positive chemotaxis +GO:0050931,pigment cell differentiation +GO:0050932,regulation of pigment cell differentiation +GO:0050942,positive regulation of pigment cell differentiation +GO:0050951,sensory perception of temperature stimulus +GO:0050953,sensory perception of light stimulus +GO:0050954,sensory perception of mechanical stimulus +GO:0050955,thermoception +GO:0050957,equilibrioception +GO:0050961,detection of temperature stimulus involved in sensory perception +GO:0050962,detection of light stimulus involved in sensory perception +GO:0050965,detection of temperature stimulus involved in sensory perception of pain +GO:0050966,detection of mechanical stimulus involved in sensory perception of pain +GO:0050968,detection of chemical stimulus involved in sensory perception of pain +GO:0050974,detection of mechanical stimulus involved in sensory perception +GO:0050975,sensory perception of touch +GO:0050976,detection of mechanical stimulus involved in sensory perception of touch +GO:0050982,detection of mechanical stimulus +GO:0050992,dimethylallyl diphosphate biosynthetic process +GO:0050993,dimethylallyl diphosphate metabolic process +GO:0050994,regulation of lipid catabolic process +GO:0050995,negative regulation of lipid catabolic process +GO:0050996,positive regulation of lipid catabolic process +GO:0050999,regulation of nitric-oxide synthase activity +GO:0051000,positive regulation of nitric-oxide synthase activity +GO:0051001,negative regulation of nitric-oxide synthase activity +GO:0051004,regulation of lipoprotein lipase activity +GO:0051005,negative regulation of lipoprotein lipase activity +GO:0051006,positive regulation of lipoprotein lipase activity +GO:0051012,microtubule sliding +GO:0051013,microtubule severing +GO:0051014,actin filament severing +GO:0051016,barbed-end actin filament capping +GO:0051017,actin filament bundle assembly +GO:0051023,regulation of immunoglobulin secretion +GO:0051024,positive regulation of immunoglobulin secretion +GO:0051025,negative regulation of immunoglobulin secretion +GO:0051026,chiasma assembly +GO:0051028,mRNA transport +GO:0051029,rRNA transport +GO:0051030,snRNA transport +GO:0051031,tRNA transport +GO:0051036,regulation of endosome size +GO:0051040,regulation of calcium-independent cell-cell adhesion +GO:0051043,regulation of membrane protein ectodomain proteolysis +GO:0051044,positive regulation of membrane protein ectodomain proteolysis +GO:0051045,negative regulation of membrane protein ectodomain proteolysis +GO:0051046,regulation of secretion +GO:0051047,positive regulation of secretion +GO:0051048,negative regulation of secretion +GO:0051050,positive regulation of transport +GO:0051051,negative regulation of transport +GO:0051052,regulation of DNA metabolic process +GO:0051053,negative regulation of DNA metabolic process +GO:0051054,positive regulation of DNA metabolic process +GO:0051055,negative regulation of lipid biosynthetic process +GO:0051056,regulation of small GTPase mediated signal transduction +GO:0051057,positive regulation of small GTPase mediated signal transduction +GO:0051058,negative regulation of small GTPase mediated signal transduction +GO:0051066,dihydrobiopterin metabolic process +GO:0051081,nuclear envelope disassembly +GO:0051083,'de novo' cotranslational protein folding +GO:0051084,'de novo' posttranslational protein folding +GO:0051085,chaperone mediated protein folding requiring cofactor +GO:0051088,PMA-inducible membrane protein ectodomain proteolysis +GO:0051090,regulation of sequence-specific DNA binding transcription factor activity +GO:0051091,positive regulation of sequence-specific DNA binding transcription factor activity +GO:0051092,positive regulation of NF-kappaB transcription factor activity +GO:0051093,negative regulation of developmental process +GO:0051095,regulation of helicase activity +GO:0051096,positive regulation of helicase activity +GO:0051097,negative regulation of helicase activity +GO:0051098,regulation of binding +GO:0051099,positive regulation of binding +GO:0051100,negative regulation of binding +GO:0051101,regulation of DNA binding +GO:0051103,DNA ligation involved in DNA repair +GO:0051105,regulation of DNA ligation +GO:0051106,positive regulation of DNA ligation +GO:0051121,hepoxilin metabolic process +GO:0051122,hepoxilin biosynthetic process +GO:0051123,RNA polymerase II transcriptional preinitiation complex assembly +GO:0051124,synaptic growth at neuromuscular junction +GO:0051125,regulation of actin nucleation +GO:0051126,negative regulation of actin nucleation +GO:0051127,positive regulation of actin nucleation +GO:0051129,negative regulation of cellular component organization +GO:0051131,chaperone-mediated protein complex assembly +GO:0051133,regulation of NK T cell activation +GO:0051135,positive regulation of NK T cell activation +GO:0051136,regulation of NK T cell differentiation +GO:0051138,positive regulation of NK T cell differentiation +GO:0051140,regulation of NK T cell proliferation +GO:0051142,positive regulation of NK T cell proliferation +GO:0051145,smooth muscle cell differentiation +GO:0051146,striated muscle cell differentiation +GO:0051147,regulation of muscle cell differentiation +GO:0051148,negative regulation of muscle cell differentiation +GO:0051149,positive regulation of muscle cell differentiation +GO:0051150,regulation of smooth muscle cell differentiation +GO:0051151,negative regulation of smooth muscle cell differentiation +GO:0051152,positive regulation of smooth muscle cell differentiation +GO:0051153,regulation of striated muscle cell differentiation +GO:0051154,negative regulation of striated muscle cell differentiation +GO:0051155,positive regulation of striated muscle cell differentiation +GO:0051156,glucose 6-phosphate metabolic process +GO:0051167,xylulose 5-phosphate metabolic process +GO:0051168,nuclear export +GO:0051169,nuclear transport +GO:0051170,nuclear import +GO:0051176,positive regulation of sulfur metabolic process +GO:0051177,meiotic sister chromatid cohesion +GO:0051180,vitamin transport +GO:0051181,cofactor transport +GO:0051182,coenzyme transport +GO:0051186,cofactor metabolic process +GO:0051187,cofactor catabolic process +GO:0051188,cofactor biosynthetic process +GO:0051189,prosthetic group metabolic process +GO:0051193,regulation of cofactor metabolic process +GO:0051194,positive regulation of cofactor metabolic process +GO:0051195,negative regulation of cofactor metabolic process +GO:0051196,regulation of coenzyme metabolic process +GO:0051197,positive regulation of coenzyme metabolic process +GO:0051198,negative regulation of coenzyme metabolic process +GO:0051204,protein insertion into mitochondrial membrane +GO:0051205,protein insertion into membrane +GO:0051208,sequestering of calcium ion +GO:0051209,release of sequestered calcium ion into cytosol +GO:0051216,cartilage development +GO:0051220,cytoplasmic sequestering of protein +GO:0051222,positive regulation of protein transport +GO:0051223,regulation of protein transport +GO:0051224,negative regulation of protein transport +GO:0051225,spindle assembly +GO:0051231,spindle elongation +GO:0051235,maintenance of location +GO:0051236,establishment of RNA localization +GO:0051238,sequestering of metal ion +GO:0051249,regulation of lymphocyte activation +GO:0051250,negative regulation of lymphocyte activation +GO:0051251,positive regulation of lymphocyte activation +GO:0051255,spindle midzone assembly +GO:0051256,mitotic spindle midzone assembly +GO:0051258,protein polymerization +GO:0051259,protein oligomerization +GO:0051260,protein homooligomerization +GO:0051261,protein depolymerization +GO:0051262,protein tetramerization +GO:0051270,regulation of cellular component movement +GO:0051271,negative regulation of cellular component movement +GO:0051272,positive regulation of cellular component movement +GO:0051276,chromosome organization +GO:0051279,regulation of release of sequestered calcium ion into cytosol +GO:0051280,negative regulation of release of sequestered calcium ion into cytosol +GO:0051281,positive regulation of release of sequestered calcium ion into cytosol +GO:0051282,regulation of sequestering of calcium ion +GO:0051283,negative regulation of sequestering of calcium ion +GO:0051284,positive regulation of sequestering of calcium ion +GO:0051289,protein homotetramerization +GO:0051290,protein heterotetramerization +GO:0051291,protein heterooligomerization +GO:0051292,nuclear pore complex assembly +GO:0051293,establishment of spindle localization +GO:0051294,establishment of spindle orientation +GO:0051295,establishment of meiotic spindle localization +GO:0051297,centrosome organization +GO:0051298,centrosome duplication +GO:0051299,centrosome separation +GO:0051301,cell division +GO:0051302,regulation of cell division +GO:0051303,establishment of chromosome localization +GO:0051304,chromosome separation +GO:0051305,chromosome movement towards spindle pole +GO:0051306,mitotic sister chromatid separation +GO:0051307,meiotic chromosome separation +GO:0051310,metaphase plate congression +GO:0051311,meiotic metaphase plate congression +GO:0051315,attachment of mitotic spindle microtubules to kinetochore +GO:0051321,meiotic cell cycle +GO:0051339,regulation of lyase activity +GO:0051340,regulation of ligase activity +GO:0051341,regulation of oxidoreductase activity +GO:0051342,regulation of cyclic-nucleotide phosphodiesterase activity +GO:0051343,positive regulation of cyclic-nucleotide phosphodiesterase activity +GO:0051344,negative regulation of cyclic-nucleotide phosphodiesterase activity +GO:0051345,positive regulation of hydrolase activity +GO:0051346,negative regulation of hydrolase activity +GO:0051347,positive regulation of transferase activity +GO:0051348,negative regulation of transferase activity +GO:0051349,positive regulation of lyase activity +GO:0051350,negative regulation of lyase activity +GO:0051351,positive regulation of ligase activity +GO:0051352,negative regulation of ligase activity +GO:0051353,positive regulation of oxidoreductase activity +GO:0051354,negative regulation of oxidoreductase activity +GO:0051365,cellular response to potassium ion starvation +GO:0051382,kinetochore assembly +GO:0051383,kinetochore organization +GO:0051384,response to glucocorticoid +GO:0051385,response to mineralocorticoid +GO:0051386,regulation of neurotrophin TRK receptor signaling pathway +GO:0051387,negative regulation of neurotrophin TRK receptor signaling pathway +GO:0051402,neuron apoptotic process +GO:0051403,stress-activated MAPK cascade +GO:0051409,response to nitrosative stress +GO:0051410,detoxification of nitrogen compound +GO:0051412,response to corticosterone +GO:0051414,response to cortisol +GO:0051415,interphase microtubule nucleation by interphase microtubule organizing center +GO:0051418,microtubule nucleation by microtubule organizing center +GO:0051436,negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle +GO:0051437,positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition +GO:0051438,regulation of ubiquitin-protein transferase activity +GO:0051439,regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle +GO:0051443,positive regulation of ubiquitin-protein transferase activity +GO:0051444,negative regulation of ubiquitin-protein transferase activity +GO:0051445,regulation of meiotic cell cycle +GO:0051446,positive regulation of meiotic cell cycle +GO:0051447,negative regulation of meiotic cell cycle +GO:0051450,myoblast proliferation +GO:0051451,myoblast migration +GO:0051452,intracellular pH reduction +GO:0051453,regulation of intracellular pH +GO:0051454,intracellular pH elevation +GO:0051457,maintenance of protein location in nucleus +GO:0051458,corticotropin secretion +GO:0051459,regulation of corticotropin secretion +GO:0051461,positive regulation of corticotropin secretion +GO:0051462,regulation of cortisol secretion +GO:0051464,positive regulation of cortisol secretion +GO:0051466,positive regulation of corticotropin-releasing hormone secretion +GO:0051480,regulation of cytosolic calcium ion concentration +GO:0051481,negative regulation of cytosolic calcium ion concentration +GO:0051482,positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway +GO:0051488,activation of anaphase-promoting complex activity +GO:0051489,regulation of filopodium assembly +GO:0051490,negative regulation of filopodium assembly +GO:0051491,positive regulation of filopodium assembly +GO:0051492,regulation of stress fiber assembly +GO:0051493,regulation of cytoskeleton organization +GO:0051494,negative regulation of cytoskeleton organization +GO:0051495,positive regulation of cytoskeleton organization +GO:0051496,positive regulation of stress fiber assembly +GO:0051497,negative regulation of stress fiber assembly +GO:0051503,adenine nucleotide transport +GO:0051532,regulation of NFAT protein import into nucleus +GO:0051533,positive regulation of NFAT protein import into nucleus +GO:0051534,negative regulation of NFAT protein import into nucleus +GO:0051541,elastin metabolic process +GO:0051546,keratinocyte migration +GO:0051547,regulation of keratinocyte migration +GO:0051549,positive regulation of keratinocyte migration +GO:0051552,flavone metabolic process +GO:0051560,mitochondrial calcium ion homeostasis +GO:0051561,positive regulation of mitochondrial calcium ion concentration +GO:0051563,smooth endoplasmic reticulum calcium ion homeostasis +GO:0051567,histone H3-K9 methylation +GO:0051568,histone H3-K4 methylation +GO:0051569,regulation of histone H3-K4 methylation +GO:0051570,regulation of histone H3-K9 methylation +GO:0051571,positive regulation of histone H3-K4 methylation +GO:0051572,negative regulation of histone H3-K4 methylation +GO:0051573,negative regulation of histone H3-K9 methylation +GO:0051574,positive regulation of histone H3-K9 methylation +GO:0051580,regulation of neurotransmitter uptake +GO:0051581,negative regulation of neurotransmitter uptake +GO:0051582,positive regulation of neurotransmitter uptake +GO:0051583,dopamine uptake involved in synaptic transmission +GO:0051584,regulation of dopamine uptake involved in synaptic transmission +GO:0051586,positive regulation of dopamine uptake involved in synaptic transmission +GO:0051588,regulation of neurotransmitter transport +GO:0051589,negative regulation of neurotransmitter transport +GO:0051590,positive regulation of neurotransmitter transport +GO:0051591,response to cAMP +GO:0051592,response to calcium ion +GO:0051593,response to folic acid +GO:0051594,detection of glucose +GO:0051595,response to methylglyoxal +GO:0051596,methylglyoxal catabolic process +GO:0051597,response to methylmercury +GO:0051598,meiotic recombination checkpoint +GO:0051599,response to hydrostatic pressure +GO:0051601,exocyst localization +GO:0051602,response to electrical stimulus +GO:0051603,proteolysis involved in cellular protein catabolic process +GO:0051604,protein maturation +GO:0051606,detection of stimulus +GO:0051607,defense response to virus +GO:0051608,histamine transport +GO:0051610,serotonin uptake +GO:0051611,regulation of serotonin uptake +GO:0051612,negative regulation of serotonin uptake +GO:0051639,actin filament network formation +GO:0051640,organelle localization +GO:0051642,centrosome localization +GO:0051643,endoplasmic reticulum localization +GO:0051645,Golgi localization +GO:0051646,mitochondrion localization +GO:0051647,nucleus localization +GO:0051648,vesicle localization +GO:0051650,establishment of vesicle localization +GO:0051651,maintenance of location in cell +GO:0051653,spindle localization +GO:0051654,establishment of mitochondrion localization +GO:0051656,establishment of organelle localization +GO:0051657,maintenance of organelle location +GO:0051659,maintenance of mitochondrion location +GO:0051660,establishment of centrosome localization +GO:0051661,maintenance of centrosome location +GO:0051665,membrane raft localization +GO:0051668,localization within membrane +GO:0051674,localization of cell +GO:0051683,establishment of Golgi localization +GO:0051684,maintenance of Golgi location +GO:0051693,actin filament capping +GO:0051694,pointed-end actin filament capping +GO:0051695,actin filament uncapping +GO:0051697,protein delipidation +GO:0051701,interaction with host +GO:0051702,interaction with symbiont +GO:0051703,intraspecies interaction between organisms +GO:0051705,multi-organism behavior +GO:0051707,response to other organism +GO:0051708,intracellular protein transport in other organism involved in symbiotic interaction +GO:0051709,regulation of killing of cells of other organism +GO:0051712,positive regulation of killing of cells of other organism +GO:0051715,cytolysis in other organism +GO:0051725,protein de-ADP-ribosylation +GO:0051754,"meiotic sister chromatid cohesion, centromeric" +GO:0051764,actin crosslink formation +GO:0051769,regulation of nitric-oxide synthase biosynthetic process +GO:0051770,positive regulation of nitric-oxide synthase biosynthetic process +GO:0051771,negative regulation of nitric-oxide synthase biosynthetic process +GO:0051775,response to redox state +GO:0051781,positive regulation of cell division +GO:0051782,negative regulation of cell division +GO:0051783,regulation of nuclear division +GO:0051784,negative regulation of nuclear division +GO:0051785,positive regulation of nuclear division +GO:0051788,response to misfolded protein +GO:0051790,short-chain fatty acid biosynthetic process +GO:0051791,medium-chain fatty acid metabolic process +GO:0051792,medium-chain fatty acid biosynthetic process +GO:0051794,regulation of catagen +GO:0051795,positive regulation of catagen +GO:0051797,regulation of hair follicle development +GO:0051798,positive regulation of hair follicle development +GO:0051799,negative regulation of hair follicle development +GO:0051801,cytolysis in other organism involved in symbiotic interaction +GO:0051806,entry into cell of other organism involved in symbiotic interaction +GO:0051817,modification of morphology or physiology of other organism involved in symbiotic interaction +GO:0051818,disruption of cells of other organism involved in symbiotic interaction +GO:0051823,regulation of synapse structural plasticity +GO:0051828,entry into other organism involved in symbiotic interaction +GO:0051832,avoidance of defenses of other organism involved in symbiotic interaction +GO:0051834,evasion or tolerance of defenses of other organism involved in symbiotic interaction +GO:0051835,positive regulation of synapse structural plasticity +GO:0051851,modification by host of symbiont morphology or physiology +GO:0051852,disruption by host of symbiont cells +GO:0051865,protein autoubiquitination +GO:0051866,general adaptation syndrome +GO:0051873,killing by host of symbiont cells +GO:0051875,pigment granule localization +GO:0051877,pigment granule aggregation in cell center +GO:0051878,lateral element assembly +GO:0051881,regulation of mitochondrial membrane potential +GO:0051882,mitochondrial depolarization +GO:0051883,killing of cells in other organism involved in symbiotic interaction +GO:0051890,regulation of cardioblast differentiation +GO:0051891,positive regulation of cardioblast differentiation +GO:0051892,negative regulation of cardioblast differentiation +GO:0051893,regulation of focal adhesion assembly +GO:0051894,positive regulation of focal adhesion assembly +GO:0051895,negative regulation of focal adhesion assembly +GO:0051896,regulation of protein kinase B signaling +GO:0051897,positive regulation of protein kinase B signaling +GO:0051898,negative regulation of protein kinase B signaling +GO:0051899,membrane depolarization +GO:0051900,regulation of mitochondrial depolarization +GO:0051901,positive regulation of mitochondrial depolarization +GO:0051902,negative regulation of mitochondrial depolarization +GO:0051904,pigment granule transport +GO:0051905,establishment of pigment granule localization +GO:0051917,regulation of fibrinolysis +GO:0051918,negative regulation of fibrinolysis +GO:0051919,positive regulation of fibrinolysis +GO:0051923,sulfation +GO:0051924,regulation of calcium ion transport +GO:0051926,negative regulation of calcium ion transport +GO:0051928,positive regulation of calcium ion transport +GO:0051930,regulation of sensory perception of pain +GO:0051931,regulation of sensory perception +GO:0051932,"synaptic transmission, GABAergic" +GO:0051933,amino acid neurotransmitter reuptake +GO:0051934,catecholamine uptake involved in synaptic transmission +GO:0051935,glutamate reuptake +GO:0051937,catecholamine transport +GO:0051938,L-glutamate import +GO:0051940,regulation of catecholamine uptake involved in synaptic transmission +GO:0051941,regulation of amino acid uptake involved in synaptic transmission +GO:0051944,positive regulation of catecholamine uptake involved in synaptic transmission +GO:0051946,regulation of glutamate uptake involved in transmission of nerve impulse +GO:0051952,regulation of amine transport +GO:0051953,negative regulation of amine transport +GO:0051954,positive regulation of amine transport +GO:0051955,regulation of amino acid transport +GO:0051956,negative regulation of amino acid transport +GO:0051957,positive regulation of amino acid transport +GO:0051958,methotrexate transport +GO:0051960,regulation of nervous system development +GO:0051961,negative regulation of nervous system development +GO:0051962,positive regulation of nervous system development +GO:0051963,regulation of synapse assembly +GO:0051964,negative regulation of synapse assembly +GO:0051965,positive regulation of synapse assembly +GO:0051966,"regulation of synaptic transmission, glutamatergic" +GO:0051967,"negative regulation of synaptic transmission, glutamatergic" +GO:0051968,"positive regulation of synaptic transmission, glutamatergic" +GO:0051969,regulation of transmission of nerve impulse +GO:0051970,negative regulation of transmission of nerve impulse +GO:0051971,positive regulation of transmission of nerve impulse +GO:0051972,regulation of telomerase activity +GO:0051973,positive regulation of telomerase activity +GO:0051974,negative regulation of telomerase activity +GO:0051983,regulation of chromosome segregation +GO:0051984,positive regulation of chromosome segregation +GO:0051985,negative regulation of chromosome segregation +GO:0051987,positive regulation of attachment of spindle microtubules to kinetochore +GO:0051988,regulation of attachment of spindle microtubules to kinetochore +GO:0052031,modulation by symbiont of host defense response +GO:0052040,modulation by symbiont of host programmed cell death +GO:0052041,negative regulation by symbiont of host programmed cell death +GO:0052042,positive regulation by symbiont of host programmed cell death +GO:0052055,modulation by symbiont of host molecular function +GO:0052126,movement in host environment +GO:0052150,modulation by symbiont of host apoptotic process +GO:0052151,positive regulation by symbiont of host apoptotic process +GO:0052173,response to defenses of other organism involved in symbiotic interaction +GO:0052192,movement in environment of other organism involved in symbiotic interaction +GO:0052199,negative regulation of catalytic activity in other organism involved in symbiotic interaction +GO:0052200,response to host defenses +GO:0052203,modulation of catalytic activity in other organism involved in symbiotic interaction +GO:0052204,negative regulation of molecular function in other organism involved in symbiotic interaction +GO:0052205,modulation of molecular function in other organism involved in symbiotic interaction +GO:0052248,modulation of programmed cell death in other organism involved in symbiotic interaction +GO:0052251,induction by organism of defense response of other organism involved in symbiotic interaction +GO:0052255,modulation by organism of defense response of other organism involved in symbiotic interaction +GO:0052312,modulation of transcription in other organism involved in symbiotic interaction +GO:0052314,phytoalexin metabolic process +GO:0052330,positive regulation by organism of programmed cell death in other organism involved in symbiotic interaction +GO:0052331,hemolysis in other organism involved in symbiotic interaction +GO:0052403,negative regulation by host of symbiont catalytic activity +GO:0052405,negative regulation by host of symbiont molecular function +GO:0052422,modulation by host of symbiont catalytic activity +GO:0052428,modification by host of symbiont molecular function +GO:0052433,modulation by organism of apoptotic process in other organism involved in symbiotic interaction +GO:0052472,modulation by host of symbiont transcription +GO:0052490,negative regulation by organism of programmed cell death in other organism involved in symbiotic interaction +GO:0052501,positive regulation by organism of apoptotic process in other organism involved in symbiotic interaction +GO:0052509,positive regulation by symbiont of host defense response +GO:0052510,positive regulation by organism of defense response of other organism involved in symbiotic interaction +GO:0052547,regulation of peptidase activity +GO:0052548,regulation of endopeptidase activity +GO:0052551,response to defense-related nitric oxide production by other organism involved in symbiotic interaction +GO:0052552,modulation by organism of immune response of other organism involved in symbiotic interaction +GO:0052553,modulation by symbiont of host immune response +GO:0052564,response to immune response of other organism involved in symbiotic interaction +GO:0052565,response to defense-related host nitric oxide production +GO:0052572,response to host immune response +GO:0052646,alditol phosphate metabolic process +GO:0052652,cyclic purine nucleotide metabolic process +GO:0052695,cellular glucuronidation +GO:0052696,flavonoid glucuronidation +GO:0052697,xenobiotic glucuronidation +GO:0052803,imidazole-containing compound metabolic process +GO:0052805,imidazole-containing compound catabolic process +GO:0055001,muscle cell development +GO:0055002,striated muscle cell development +GO:0055003,cardiac myofibril assembly +GO:0055005,ventricular cardiac myofibril assembly +GO:0055006,cardiac cell development +GO:0055007,cardiac muscle cell differentiation +GO:0055008,cardiac muscle tissue morphogenesis +GO:0055009,atrial cardiac muscle tissue morphogenesis +GO:0055010,ventricular cardiac muscle tissue morphogenesis +GO:0055011,atrial cardiac muscle cell differentiation +GO:0055012,ventricular cardiac muscle cell differentiation +GO:0055013,cardiac muscle cell development +GO:0055014,atrial cardiac muscle cell development +GO:0055015,ventricular cardiac muscle cell development +GO:0055017,cardiac muscle tissue growth +GO:0055021,regulation of cardiac muscle tissue growth +GO:0055022,negative regulation of cardiac muscle tissue growth +GO:0055023,positive regulation of cardiac muscle tissue growth +GO:0055024,regulation of cardiac muscle tissue development +GO:0055025,positive regulation of cardiac muscle tissue development +GO:0055026,negative regulation of cardiac muscle tissue development +GO:0055057,neuroblast division +GO:0055059,asymmetric neuroblast division +GO:0055062,phosphate ion homeostasis +GO:0055064,chloride ion homeostasis +GO:0055065,metal ion homeostasis +GO:0055067,monovalent inorganic cation homeostasis +GO:0055069,zinc ion homeostasis +GO:0055070,copper ion homeostasis +GO:0055072,iron ion homeostasis +GO:0055073,cadmium ion homeostasis +GO:0055074,calcium ion homeostasis +GO:0055075,potassium ion homeostasis +GO:0055076,transition metal ion homeostasis +GO:0055078,sodium ion homeostasis +GO:0055080,cation homeostasis +GO:0055081,anion homeostasis +GO:0055082,cellular chemical homeostasis +GO:0055083,monovalent inorganic anion homeostasis +GO:0055086,nucleobase-containing small molecule metabolic process +GO:0055088,lipid homeostasis +GO:0055089,fatty acid homeostasis +GO:0055090,acylglycerol homeostasis +GO:0055091,phospholipid homeostasis +GO:0055092,sterol homeostasis +GO:0055093,response to hyperoxia +GO:0055094,response to lipoprotein particle +GO:0055095,lipoprotein particle mediated signaling +GO:0055096,low-density lipoprotein particle mediated signaling +GO:0055098,response to low-density lipoprotein particle +GO:0055099,response to high density lipoprotein particle +GO:0055114,oxidation-reduction process +GO:0055117,regulation of cardiac muscle contraction +GO:0055118,negative regulation of cardiac muscle contraction +GO:0055119,relaxation of cardiac muscle +GO:0055123,digestive system development +GO:0055129,L-proline biosynthetic process +GO:0060003,copper ion export +GO:0060004,reflex +GO:0060005,vestibular reflex +GO:0060008,Sertoli cell differentiation +GO:0060009,Sertoli cell development +GO:0060011,Sertoli cell proliferation +GO:0060012,"synaptic transmission, glycinergic" +GO:0060013,righting reflex +GO:0060014,granulosa cell differentiation +GO:0060017,parathyroid gland development +GO:0060018,astrocyte fate commitment +GO:0060019,radial glial cell differentiation +GO:0060020,Bergmann glial cell differentiation +GO:0060021,palate development +GO:0060022,hard palate development +GO:0060023,soft palate development +GO:0060024,rhythmic synaptic transmission +GO:0060026,convergent extension +GO:0060027,convergent extension involved in gastrulation +GO:0060028,convergent extension involved in axis elongation +GO:0060029,convergent extension involved in organogenesis +GO:0060031,mediolateral intercalation +GO:0060032,notochord regression +GO:0060033,anatomical structure regression +GO:0060037,pharyngeal system development +GO:0060038,cardiac muscle cell proliferation +GO:0060039,pericardium development +GO:0060040,retinal bipolar neuron differentiation +GO:0060041,retina development in camera-type eye +GO:0060042,retina morphogenesis in camera-type eye +GO:0060043,regulation of cardiac muscle cell proliferation +GO:0060044,negative regulation of cardiac muscle cell proliferation +GO:0060045,positive regulation of cardiac muscle cell proliferation +GO:0060046,regulation of acrosome reaction +GO:0060047,heart contraction +GO:0060048,cardiac muscle contraction +GO:0060049,regulation of protein glycosylation +GO:0060050,positive regulation of protein glycosylation +GO:0060051,negative regulation of protein glycosylation +GO:0060052,neurofilament cytoskeleton organization +GO:0060054,positive regulation of epithelial cell proliferation involved in wound healing +GO:0060055,angiogenesis involved in wound healing +GO:0060056,mammary gland involution +GO:0060058,positive regulation of apoptotic process involved in mammary gland involution +GO:0060059,embryonic retina morphogenesis in camera-type eye +GO:0060060,post-embryonic retina morphogenesis in camera-type eye +GO:0060061,Spemann organizer formation +GO:0060065,uterus development +GO:0060066,oviduct development +GO:0060067,cervix development +GO:0060068,vagina development +GO:0060070,canonical Wnt signaling pathway +GO:0060071,"Wnt signaling pathway, planar cell polarity pathway" +GO:0060073,micturition +GO:0060074,synapse maturation +GO:0060075,regulation of resting membrane potential +GO:0060078,regulation of postsynaptic membrane potential +GO:0060079,excitatory postsynaptic potential +GO:0060080,inhibitory postsynaptic potential +GO:0060081,membrane hyperpolarization +GO:0060083,smooth muscle contraction involved in micturition +GO:0060084,synaptic transmission involved in micturition +GO:0060086,circadian temperature homeostasis +GO:0060087,relaxation of vascular smooth muscle +GO:0060088,auditory receptor cell stereocilium organization +GO:0060099,"regulation of phagocytosis, engulfment" +GO:0060100,"positive regulation of phagocytosis, engulfment" +GO:0060112,generation of ovulation cycle rhythm +GO:0060113,inner ear receptor cell differentiation +GO:0060117,auditory receptor cell development +GO:0060119,inner ear receptor cell development +GO:0060120,inner ear receptor cell fate commitment +GO:0060122,inner ear receptor stereocilium organization +GO:0060123,regulation of growth hormone secretion +GO:0060124,positive regulation of growth hormone secretion +GO:0060126,somatotropin secreting cell differentiation +GO:0060128,corticotropin hormone secreting cell differentiation +GO:0060129,thyroid-stimulating hormone-secreting cell differentiation +GO:0060133,somatotropin secreting cell development +GO:0060134,prepulse inhibition +GO:0060135,maternal process involved in female pregnancy +GO:0060136,embryonic process involved in female pregnancy +GO:0060137,maternal process involved in parturition +GO:0060139,positive regulation of apoptotic process by virus +GO:0060142,regulation of syncytium formation by plasma membrane fusion +GO:0060143,positive regulation of syncytium formation by plasma membrane fusion +GO:0060147,regulation of posttranscriptional gene silencing +GO:0060148,positive regulation of posttranscriptional gene silencing +GO:0060149,negative regulation of posttranscriptional gene silencing +GO:0060151,peroxisome localization +GO:0060152,microtubule-based peroxisome localization +GO:0060154,cellular process regulating host cell cycle in response to virus +GO:0060155,platelet dense granule organization +GO:0060157,urinary bladder development +GO:0060158,phospholipase C-activating dopamine receptor signaling pathway +GO:0060159,regulation of dopamine receptor signaling pathway +GO:0060160,negative regulation of dopamine receptor signaling pathway +GO:0060161,positive regulation of dopamine receptor signaling pathway +GO:0060163,subpallium neuron fate commitment +GO:0060164,regulation of timing of neuron differentiation +GO:0060166,olfactory pit development +GO:0060167,regulation of adenosine receptor signaling pathway +GO:0060168,positive regulation of adenosine receptor signaling pathway +GO:0060173,limb development +GO:0060174,limb bud formation +GO:0060177,regulation of angiotensin metabolic process +GO:0060178,regulation of exocyst localization +GO:0060179,male mating behavior +GO:0060180,female mating behavior +GO:0060191,regulation of lipase activity +GO:0060192,negative regulation of lipase activity +GO:0060193,positive regulation of lipase activity +GO:0060197,cloacal septation +GO:0060211,regulation of nuclear-transcribed mRNA poly(A) tail shortening +GO:0060213,positive regulation of nuclear-transcribed mRNA poly(A) tail shortening +GO:0060214,endocardium formation +GO:0060215,primitive hemopoiesis +GO:0060216,definitive hemopoiesis +GO:0060218,hematopoietic stem cell differentiation +GO:0060219,camera-type eye photoreceptor cell differentiation +GO:0060220,camera-type eye photoreceptor cell fate commitment +GO:0060221,retinal rod cell differentiation +GO:0060231,mesenchymal to epithelial transition +GO:0060235,lens induction in camera-type eye +GO:0060236,regulation of mitotic spindle organization +GO:0060242,contact inhibition +GO:0060244,negative regulation of cell proliferation involved in contact inhibition +GO:0060249,anatomical structure homeostasis +GO:0060251,regulation of glial cell proliferation +GO:0060252,positive regulation of glial cell proliferation +GO:0060253,negative regulation of glial cell proliferation +GO:0060259,regulation of feeding behavior +GO:0060260,regulation of transcription initiation from RNA polymerase II promoter +GO:0060261,positive regulation of transcription initiation from RNA polymerase II promoter +GO:0060263,regulation of respiratory burst +GO:0060264,regulation of respiratory burst involved in inflammatory response +GO:0060265,positive regulation of respiratory burst involved in inflammatory response +GO:0060266,negative regulation of respiratory burst involved in inflammatory response +GO:0060267,positive regulation of respiratory burst +GO:0060268,negative regulation of respiratory burst +GO:0060271,cilium morphogenesis +GO:0060272,embryonic skeletal joint morphogenesis +GO:0060278,regulation of ovulation +GO:0060279,positive regulation of ovulation +GO:0060281,regulation of oocyte development +GO:0060282,positive regulation of oocyte development +GO:0060283,negative regulation of oocyte development +GO:0060284,regulation of cell development +GO:0060285,cilium-dependent cell motility +GO:0060287,epithelial cilium movement involved in determination of left/right asymmetry +GO:0060290,transdifferentiation +GO:0060291,long-term synaptic potentiation +GO:0060292,long term synaptic depression +GO:0060294,cilium movement involved in cell motility +GO:0060295,regulation of cilium movement involved in cell motility +GO:0060296,regulation of cilium beat frequency involved in ciliary motility +GO:0060297,regulation of sarcomere organization +GO:0060298,positive regulation of sarcomere organization +GO:0060300,regulation of cytokine activity +GO:0060302,negative regulation of cytokine activity +GO:0060306,regulation of membrane repolarization +GO:0060307,regulation of ventricular cardiac muscle cell membrane repolarization +GO:0060312,regulation of blood vessel remodeling +GO:0060313,negative regulation of blood vessel remodeling +GO:0060314,regulation of ryanodine-sensitive calcium-release channel activity +GO:0060315,negative regulation of ryanodine-sensitive calcium-release channel activity +GO:0060316,positive regulation of ryanodine-sensitive calcium-release channel activity +GO:0060317,cardiac epithelial to mesenchymal transition +GO:0060318,definitive erythrocyte differentiation +GO:0060319,primitive erythrocyte differentiation +GO:0060322,head development +GO:0060323,head morphogenesis +GO:0060324,face development +GO:0060325,face morphogenesis +GO:0060326,cell chemotaxis +GO:0060327,cytoplasmic actin-based contraction involved in cell motility +GO:0060330,regulation of response to interferon-gamma +GO:0060331,negative regulation of response to interferon-gamma +GO:0060332,positive regulation of response to interferon-gamma +GO:0060333,interferon-gamma-mediated signaling pathway +GO:0060334,regulation of interferon-gamma-mediated signaling pathway +GO:0060335,positive regulation of interferon-gamma-mediated signaling pathway +GO:0060336,negative regulation of interferon-gamma-mediated signaling pathway +GO:0060337,type I interferon signaling pathway +GO:0060338,regulation of type I interferon-mediated signaling pathway +GO:0060339,negative regulation of type I interferon-mediated signaling pathway +GO:0060340,positive regulation of type I interferon-mediated signaling pathway +GO:0060343,trabecula formation +GO:0060346,bone trabecula formation +GO:0060347,heart trabecula formation +GO:0060348,bone development +GO:0060349,bone morphogenesis +GO:0060350,endochondral bone morphogenesis +GO:0060351,cartilage development involved in endochondral bone morphogenesis +GO:0060352,cell adhesion molecule production +GO:0060353,regulation of cell adhesion molecule production +GO:0060355,positive regulation of cell adhesion molecule production +GO:0060359,response to ammonium ion +GO:0060363,cranial suture morphogenesis +GO:0060364,frontal suture morphogenesis +GO:0060368,regulation of Fc receptor mediated stimulatory signaling pathway +GO:0060369,positive regulation of Fc receptor mediated stimulatory signaling pathway +GO:0060370,susceptibility to T cell mediated cytotoxicity +GO:0060371,regulation of atrial cardiac muscle cell membrane depolarization +GO:0060372,regulation of atrial cardiac muscle cell membrane repolarization +GO:0060373,regulation of ventricular cardiac muscle cell membrane depolarization +GO:0060374,mast cell differentiation +GO:0060375,regulation of mast cell differentiation +GO:0060379,cardiac muscle cell myoblast differentiation +GO:0060384,innervation +GO:0060385,axonogenesis involved in innervation +GO:0060389,pathway-restricted SMAD protein phosphorylation +GO:0060390,regulation of SMAD protein import into nucleus +GO:0060391,positive regulation of SMAD protein import into nucleus +GO:0060392,negative regulation of SMAD protein import into nucleus +GO:0060393,regulation of pathway-restricted SMAD protein phosphorylation +GO:0060394,negative regulation of pathway-restricted SMAD protein phosphorylation +GO:0060395,SMAD protein signal transduction +GO:0060396,growth hormone receptor signaling pathway +GO:0060397,JAK-STAT cascade involved in growth hormone signaling pathway +GO:0060398,regulation of growth hormone receptor signaling pathway +GO:0060399,positive regulation of growth hormone receptor signaling pathway +GO:0060401,cytosolic calcium ion transport +GO:0060402,calcium ion transport into cytosol +GO:0060405,regulation of penile erection +GO:0060406,positive regulation of penile erection +GO:0060411,cardiac septum morphogenesis +GO:0060412,ventricular septum morphogenesis +GO:0060413,atrial septum morphogenesis +GO:0060414,aorta smooth muscle tissue morphogenesis +GO:0060415,muscle tissue morphogenesis +GO:0060416,response to growth hormone +GO:0060419,heart growth +GO:0060420,regulation of heart growth +GO:0060421,positive regulation of heart growth +GO:0060425,lung morphogenesis +GO:0060426,lung vasculature development +GO:0060428,lung epithelium development +GO:0060430,lung saccule development +GO:0060431,primary lung bud formation +GO:0060433,bronchus development +GO:0060434,bronchus morphogenesis +GO:0060435,bronchiole development +GO:0060437,lung growth +GO:0060438,trachea development +GO:0060439,trachea morphogenesis +GO:0060440,trachea formation +GO:0060441,epithelial tube branching involved in lung morphogenesis +GO:0060442,branching involved in prostate gland morphogenesis +GO:0060443,mammary gland morphogenesis +GO:0060444,branching involved in mammary gland duct morphogenesis +GO:0060445,branching involved in salivary gland morphogenesis +GO:0060447,bud outgrowth involved in lung branching +GO:0060448,dichotomous subdivision of terminal units involved in lung branching +GO:0060449,bud elongation involved in lung branching +GO:0060450,positive regulation of hindgut contraction +GO:0060452,positive regulation of cardiac muscle contraction +GO:0060453,regulation of gastric acid secretion +GO:0060454,positive regulation of gastric acid secretion +GO:0060455,negative regulation of gastric acid secretion +GO:0060456,positive regulation of digestive system process +GO:0060457,negative regulation of digestive system process +GO:0060459,left lung development +GO:0060460,left lung morphogenesis +GO:0060462,lung lobe development +GO:0060463,lung lobe morphogenesis +GO:0060465,pharynx development +GO:0060466,activation of meiosis involved in egg activation +GO:0060467,negative regulation of fertilization +GO:0060468,prevention of polyspermy +GO:0060474,positive regulation of sperm motility involved in capacitation +GO:0060478,acrosomal vesicle exocytosis +GO:0060479,lung cell differentiation +GO:0060480,lung goblet cell differentiation +GO:0060481,lobar bronchus epithelium development +GO:0060482,lobar bronchus development +GO:0060484,lung-associated mesenchyme development +GO:0060485,mesenchyme development +GO:0060486,Clara cell differentiation +GO:0060487,lung epithelial cell differentiation +GO:0060488,orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis +GO:0060489,planar dichotomous subdivision of terminal units involved in lung branching morphogenesis +GO:0060490,lateral sprouting involved in lung morphogenesis +GO:0060491,regulation of cell projection assembly +GO:0060492,lung induction +GO:0060501,positive regulation of epithelial cell proliferation involved in lung morphogenesis +GO:0060502,epithelial cell proliferation involved in lung morphogenesis +GO:0060509,Type I pneumocyte differentiation +GO:0060510,Type II pneumocyte differentiation +GO:0060512,prostate gland morphogenesis +GO:0060513,prostatic bud formation +GO:0060516,primary prostatic bud elongation +GO:0060523,prostate epithelial cord elongation +GO:0060525,prostate glandular acinus development +GO:0060526,prostate glandular acinus morphogenesis +GO:0060527,prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis +GO:0060528,secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development +GO:0060529,squamous basal epithelial stem cell differentiation involved in prostate gland acinus development +GO:0060532,bronchus cartilage development +GO:0060534,trachea cartilage development +GO:0060535,trachea cartilage morphogenesis +GO:0060536,cartilage morphogenesis +GO:0060537,muscle tissue development +GO:0060538,skeletal muscle organ development +GO:0060539,diaphragm development +GO:0060541,respiratory system development +GO:0060544,regulation of necroptotic process +GO:0060545,positive regulation of necroptotic process +GO:0060546,negative regulation of necroptotic process +GO:0060547,negative regulation of necrotic cell death +GO:0060548,negative regulation of cell death +GO:0060556,regulation of vitamin D biosynthetic process +GO:0060557,positive regulation of vitamin D biosynthetic process +GO:0060558,regulation of calcidiol 1-monooxygenase activity +GO:0060559,positive regulation of calcidiol 1-monooxygenase activity +GO:0060560,developmental growth involved in morphogenesis +GO:0060561,apoptotic process involved in morphogenesis +GO:0060562,epithelial tube morphogenesis +GO:0060563,neuroepithelial cell differentiation +GO:0060564,negative regulation of APC-Cdc20 complex activity +GO:0060571,morphogenesis of an epithelial fold +GO:0060572,morphogenesis of an epithelial bud +GO:0060573,cell fate specification involved in pattern specification +GO:0060574,intestinal epithelial cell maturation +GO:0060575,intestinal epithelial cell differentiation +GO:0060576,intestinal epithelial cell development +GO:0060577,pulmonary vein morphogenesis +GO:0060579,ventral spinal cord interneuron fate commitment +GO:0060581,cell fate commitment involved in pattern specification +GO:0060584,regulation of prostaglandin-endoperoxide synthase activity +GO:0060585,positive regulation of prostaglandin-endoperoxide synthase activity +GO:0060586,multicellular organismal iron ion homeostasis +GO:0060587,regulation of lipoprotein lipid oxidation +GO:0060591,chondroblast differentiation +GO:0060592,mammary gland formation +GO:0060594,mammary gland specification +GO:0060595,fibroblast growth factor receptor signaling pathway involved in mammary gland specification +GO:0060596,mammary placode formation +GO:0060598,dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis +GO:0060600,dichotomous subdivision of an epithelial terminal unit +GO:0060601,lateral sprouting from an epithelium +GO:0060602,branch elongation of an epithelium +GO:0060603,mammary gland duct morphogenesis +GO:0060605,tube lumen cavitation +GO:0060606,tube closure +GO:0060612,adipose tissue development +GO:0060613,fat pad development +GO:0060615,mammary gland bud formation +GO:0060620,regulation of cholesterol import +GO:0060621,negative regulation of cholesterol import +GO:0060623,regulation of chromosome condensation +GO:0060627,regulation of vesicle-mediated transport +GO:0060628,regulation of ER to Golgi vesicle-mediated transport +GO:0060631,regulation of meiosis I +GO:0060632,regulation of microtubule-based movement +GO:0060633,negative regulation of transcription initiation from RNA polymerase II promoter +GO:0060638,mesenchymal-epithelial cell signaling +GO:0060644,mammary gland epithelial cell differentiation +GO:0060648,mammary gland bud morphogenesis +GO:0060661,submandibular salivary gland formation +GO:0060662,salivary gland cavitation +GO:0060664,epithelial cell proliferation involved in salivary gland morphogenesis +GO:0060665,regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling +GO:0060666,dichotomous subdivision of terminal units involved in salivary gland branching +GO:0060667,branch elongation involved in salivary gland morphogenesis +GO:0060669,embryonic placenta morphogenesis +GO:0060670,branching involved in labyrinthine layer morphogenesis +GO:0060671,epithelial cell differentiation involved in embryonic placenta development +GO:0060672,epithelial cell morphogenesis involved in placental branching +GO:0060674,placenta blood vessel development +GO:0060675,ureteric bud morphogenesis +GO:0060676,ureteric bud formation +GO:0060677,ureteric bud elongation +GO:0060684,epithelial-mesenchymal cell signaling +GO:0060685,regulation of prostatic bud formation +GO:0060686,negative regulation of prostatic bud formation +GO:0060687,regulation of branching involved in prostate gland morphogenesis +GO:0060688,regulation of morphogenesis of a branching structure +GO:0060689,cell differentiation involved in salivary gland development +GO:0060693,regulation of branching involved in salivary gland morphogenesis +GO:0060694,regulation of cholesterol transporter activity +GO:0060696,regulation of phospholipid catabolic process +GO:0060697,positive regulation of phospholipid catabolic process +GO:0060699,regulation of endoribonuclease activity +GO:0060700,regulation of ribonuclease activity +GO:0060706,cell differentiation involved in embryonic placenta development +GO:0060707,trophoblast giant cell differentiation +GO:0060708,spongiotrophoblast differentiation +GO:0060710,chorio-allantoic fusion +GO:0060711,labyrinthine layer development +GO:0060712,spongiotrophoblast layer development +GO:0060713,labyrinthine layer morphogenesis +GO:0060715,syncytiotrophoblast cell differentiation involved in labyrinthine layer development +GO:0060716,labyrinthine layer blood vessel development +GO:0060717,chorion development +GO:0060718,chorionic trophoblast cell differentiation +GO:0060729,intestinal epithelial structure maintenance +GO:0060730,regulation of intestinal epithelial structure maintenance +GO:0060732,positive regulation of inositol phosphate biosynthetic process +GO:0060733,regulation of eIF2 alpha phosphorylation by amino acid starvation +GO:0060734,regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation +GO:0060736,prostate gland growth +GO:0060737,prostate gland morphogenetic growth +GO:0060738,epithelial-mesenchymal signaling involved in prostate gland development +GO:0060740,prostate gland epithelium morphogenesis +GO:0060741,prostate gland stromal morphogenesis +GO:0060742,epithelial cell differentiation involved in prostate gland development +GO:0060743,epithelial cell maturation involved in prostate gland development +GO:0060744,mammary gland branching involved in thelarche +GO:0060745,mammary gland branching involved in pregnancy +GO:0060746,parental behavior +GO:0060748,tertiary branching involved in mammary gland duct morphogenesis +GO:0060749,mammary gland alveolus development +GO:0060750,epithelial cell proliferation involved in mammary gland duct elongation +GO:0060751,branch elongation involved in mammary gland duct branching +GO:0060753,regulation of mast cell chemotaxis +GO:0060754,positive regulation of mast cell chemotaxis +GO:0060759,regulation of response to cytokine stimulus +GO:0060760,positive regulation of response to cytokine stimulus +GO:0060761,negative regulation of response to cytokine stimulus +GO:0060762,regulation of branching involved in mammary gland duct morphogenesis +GO:0060763,mammary duct terminal end bud growth +GO:0060764,cell-cell signaling involved in mammary gland development +GO:0060765,regulation of androgen receptor signaling pathway +GO:0060766,negative regulation of androgen receptor signaling pathway +GO:0060768,regulation of epithelial cell proliferation involved in prostate gland development +GO:0060769,positive regulation of epithelial cell proliferation involved in prostate gland development +GO:0060770,negative regulation of epithelial cell proliferation involved in prostate gland development +GO:0060775,planar cell polarity pathway involved in gastrula mediolateral intercalation +GO:0060788,ectodermal placode formation +GO:0060789,hair follicle placode formation +GO:0060795,cell fate commitment involved in formation of primary germ layer +GO:0060796,regulation of transcription involved in primary germ layer cell fate commitment +GO:0060800,regulation of cell differentiation involved in embryonic placenta development +GO:0060809,mesodermal to mesenchymal transition involved in gastrulation +GO:0060821,inactivation of X chromosome by DNA methylation +GO:0060828,regulation of canonical Wnt signaling pathway +GO:0060830,ciliary receptor clustering involved in smoothened signaling pathway +GO:0060831,smoothened signaling pathway involved in dorsal/ventral neural tube patterning +GO:0060836,lymphatic endothelial cell differentiation +GO:0060837,blood vessel endothelial cell differentiation +GO:0060838,lymphatic endothelial cell fate commitment +GO:0060839,endothelial cell fate commitment +GO:0060840,artery development +GO:0060841,venous blood vessel development +GO:0060842,arterial endothelial cell differentiation +GO:0060844,arterial endothelial cell fate commitment +GO:0060846,blood vessel endothelial cell fate commitment +GO:0060847,endothelial cell fate specification +GO:0060849,regulation of transcription involved in lymphatic endothelial cell fate commitment +GO:0060850,regulation of transcription involved in cell fate commitment +GO:0060856,establishment of blood-brain barrier +GO:0060872,semicircular canal development +GO:0060876,semicircular canal formation +GO:0060896,neural plate pattern specification +GO:0060897,neural plate regionalization +GO:0060900,embryonic camera-type eye formation +GO:0060903,positive regulation of meiosis I +GO:0060907,positive regulation of macrophage cytokine production +GO:0060911,cardiac cell fate commitment +GO:0060913,cardiac cell fate determination +GO:0060914,heart formation +GO:0060915,mesenchymal cell differentiation involved in lung development +GO:0060916,mesenchymal cell proliferation involved in lung development +GO:0060920,cardiac pacemaker cell differentiation +GO:0060921,sinoatrial node cell differentiation +GO:0060922,atrioventricular node cell differentiation +GO:0060923,cardiac muscle cell fate commitment +GO:0060926,cardiac pacemaker cell development +GO:0060928,atrioventricular node cell development +GO:0060931,sinoatrial node cell development +GO:0060932,His-Purkinje system cell differentiation +GO:0060947,cardiac vascular smooth muscle cell differentiation +GO:0060948,cardiac vascular smooth muscle cell development +GO:0060956,endocardial cell differentiation +GO:0060964,regulation of gene silencing by miRNA +GO:0060965,negative regulation of gene silencing by miRNA +GO:0060966,regulation of gene silencing by RNA +GO:0060967,negative regulation of gene silencing by RNA +GO:0060968,regulation of gene silencing +GO:0060969,negative regulation of gene silencing +GO:0060971,embryonic heart tube left/right pattern formation +GO:0060972,left/right pattern formation +GO:0060973,cell migration involved in heart development +GO:0060974,cell migration involved in heart formation +GO:0060976,coronary vasculature development +GO:0060977,coronary vasculature morphogenesis +GO:0060978,angiogenesis involved in coronary vascular morphogenesis +GO:0060979,vasculogenesis involved in coronary vascular morphogenesis +GO:0060982,coronary artery morphogenesis +GO:0060986,endocrine hormone secretion +GO:0060988,lipid tube assembly +GO:0060992,response to fungicide +GO:0060993,kidney morphogenesis +GO:0060995,cell-cell signaling involved in kidney development +GO:0060996,dendritic spine development +GO:0060997,dendritic spine morphogenesis +GO:0060998,regulation of dendritic spine development +GO:0060999,positive regulation of dendritic spine development +GO:0061000,negative regulation of dendritic spine development +GO:0061001,regulation of dendritic spine morphogenesis +GO:0061002,negative regulation of dendritic spine morphogenesis +GO:0061003,positive regulation of dendritic spine morphogenesis +GO:0061004,pattern specification involved in kidney development +GO:0061005,cell differentiation involved in kidney development +GO:0061008,hepaticobiliary system development +GO:0061009,common bile duct development +GO:0061010,gall bladder development +GO:0061013,regulation of mRNA catabolic process +GO:0061014,positive regulation of mRNA catabolic process +GO:0061017,hepatoblast differentiation +GO:0061024,membrane organization +GO:0061025,membrane fusion +GO:0061027,umbilical cord development +GO:0061028,establishment of endothelial barrier +GO:0061029,eyelid development in camera-type eye +GO:0061030,epithelial cell differentiation involved in mammary gland alveolus development +GO:0061031,endodermal digestive tract morphogenesis +GO:0061032,visceral serous pericardium development +GO:0061033,secretion by lung epithelial cell involved in lung growth +GO:0061034,olfactory bulb mitral cell layer development +GO:0061035,regulation of cartilage development +GO:0061036,positive regulation of cartilage development +GO:0061037,negative regulation of cartilage development +GO:0061038,uterus morphogenesis +GO:0061041,regulation of wound healing +GO:0061042,vascular wound healing +GO:0061043,regulation of vascular wound healing +GO:0061045,negative regulation of wound healing +GO:0061046,regulation of branching involved in lung morphogenesis +GO:0061047,positive regulation of branching involved in lung morphogenesis +GO:0061049,cell growth involved in cardiac muscle cell development +GO:0061050,regulation of cell growth involved in cardiac muscle cell development +GO:0061051,positive regulation of cell growth involved in cardiac muscle cell development +GO:0061052,negative regulation of cell growth involved in cardiac muscle cell development +GO:0061053,somite development +GO:0061055,myotome development +GO:0061056,sclerotome development +GO:0061061,muscle structure development +GO:0061072,iris morphogenesis +GO:0061073,ciliary body morphogenesis +GO:0061074,regulation of neural retina development +GO:0061077,chaperone-mediated protein folding +GO:0061081,positive regulation of myeloid leukocyte cytokine production involved in immune response +GO:0061082,myeloid leukocyte cytokine production +GO:0061083,regulation of protein refolding +GO:0061084,negative regulation of protein refolding +GO:0061085,regulation of histone H3-K27 methylation +GO:0061086,negative regulation of histone H3-K27 methylation +GO:0061087,positive regulation of histone H3-K27 methylation +GO:0061088,regulation of sequestering of zinc ion +GO:0061091,regulation of phospholipid translocation +GO:0061092,positive regulation of phospholipid translocation +GO:0061097,regulation of protein tyrosine kinase activity +GO:0061098,positive regulation of protein tyrosine kinase activity +GO:0061099,negative regulation of protein tyrosine kinase activity +GO:0061101,neuroendocrine cell differentiation +GO:0061104,adrenal chromaffin cell differentiation +GO:0061113,pancreas morphogenesis +GO:0061117,negative regulation of heart growth +GO:0061136,regulation of proteasomal protein catabolic process +GO:0061138,morphogenesis of a branching epithelium +GO:0061140,lung secretory cell differentiation +GO:0061145,lung smooth muscle development +GO:0061146,Peyer's patch morphogenesis +GO:0061152,trachea submucosa development +GO:0061153,trachea gland development +GO:0061154,endothelial tube morphogenesis +GO:0061156,pulmonary artery morphogenesis +GO:0061157,mRNA destabilization +GO:0061158,3'-UTR-mediated mRNA destabilization +GO:0061162,establishment of monopolar cell polarity +GO:0061178,regulation of insulin secretion involved in cellular response to glucose stimulus +GO:0061179,negative regulation of insulin secretion involved in cellular response to glucose stimulus +GO:0061180,mammary gland epithelium development +GO:0061181,regulation of chondrocyte development +GO:0061182,negative regulation of chondrocyte development +GO:0061183,regulation of dermatome development +GO:0061184,positive regulation of dermatome development +GO:0061187,regulation of chromatin silencing at rDNA +GO:0061188,negative regulation of chromatin silencing at rDNA +GO:0061193,taste bud development +GO:0061196,fungiform papilla development +GO:0061197,fungiform papilla morphogenesis +GO:0061198,fungiform papilla formation +GO:0061205,paramesonephric duct development +GO:0061209,cell proliferation involved in mesonephros development +GO:0061213,positive regulation of mesonephros development +GO:0061217,regulation of mesonephros development +GO:0061218,negative regulation of mesonephros development +GO:0061227,pattern specification involved in mesonephros development +GO:0061245,establishment or maintenance of bipolar cell polarity +GO:0061289,Wnt signaling pathway involved in kidney development +GO:0061290,canonical Wnt signaling pathway involved in metanephric kidney development +GO:0061298,retina vasculature development in camera-type eye +GO:0061299,retina vasculature morphogenesis in camera-type eye +GO:0061300,cerebellum vasculature development +GO:0061302,smooth muscle cell-matrix adhesion +GO:0061303,cornea development in camera-type eye +GO:0061304,retinal blood vessel morphogenesis +GO:0061307,cardiac neural crest cell differentiation involved in heart development +GO:0061308,cardiac neural crest cell development involved in heart development +GO:0061309,cardiac neural crest cell development involved in outflow tract morphogenesis +GO:0061311,cell surface receptor signaling pathway involved in heart development +GO:0061312,BMP signaling pathway involved in heart development +GO:0061314,Notch signaling involved in heart development +GO:0061316,canonical Wnt signaling pathway involved in heart development +GO:0061317,canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment +GO:0061318,renal filtration cell differentiation +GO:0061323,cell proliferation involved in heart morphogenesis +GO:0061325,cell proliferation involved in outflow tract morphogenesis +GO:0061326,renal tubule development +GO:0061333,renal tubule morphogenesis +GO:0061337,cardiac conduction +GO:0061339,establishment or maintenance of monopolar cell polarity +GO:0061341,non-canonical Wnt signaling pathway involved in heart development +GO:0061346,planar cell polarity pathway involved in heart morphogenesis +GO:0061351,neural precursor cell proliferation +GO:0061356,regulation of Wnt protein secretion +GO:0061364,apoptotic process involved in luteolysis +GO:0061365,positive regulation of triglyceride lipase activity +GO:0061366,behavioral response to chemical pain +GO:0061368,behavioral response to formalin induced pain +GO:0061370,testosterone biosynthetic process +GO:0061371,determination of heart left/right asymmetry +GO:0061377,mammary gland lobule development +GO:0061378,corpora quadrigemina development +GO:0061379,inferior colliculus development +GO:0061383,trabecula morphogenesis +GO:0061384,heart trabecula morphogenesis +GO:0061386,closure of optic fissure +GO:0061387,regulation of extent of cell growth +GO:0061394,regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance +GO:0061402,positive regulation of transcription from RNA polymerase II promoter in response to acidic pH +GO:0061418,regulation of transcription from RNA polymerase II promoter in response to hypoxia +GO:0061419,positive regulation of transcription from RNA polymerase II promoter in response to hypoxia +GO:0061428,negative regulation of transcription from RNA polymerase II promoter in response to hypoxia +GO:0061430,bone trabecula morphogenesis +GO:0061436,establishment of skin barrier +GO:0061437,renal system vasculature development +GO:0061438,renal system vasculature morphogenesis +GO:0061439,kidney vasculature morphogenesis +GO:0061440,kidney vasculature development +GO:0061441,renal artery morphogenesis +GO:0061443,endocardial cushion cell differentiation +GO:0061448,connective tissue development +GO:0061458,reproductive system development +GO:0061462,protein localization to lysosome +GO:0061469,regulation of type B pancreatic cell proliferation +GO:0061470,T follicular helper cell differentiation +GO:0061484,hematopoietic stem cell homeostasis +GO:0061502,early endosome to recycling endosome transport +GO:0061512,protein localization to cilium +GO:0061515,myeloid cell development +GO:0061525,hindgut development +GO:0061534,"gamma-aminobutyric acid secretion, neurotransmission" +GO:0061535,"glutamate secretion, neurotransmission" +GO:0061548,ganglion development +GO:0061549,sympathetic ganglion development +GO:0061550,cranial ganglion development +GO:0061551,trigeminal ganglion development +GO:0061564,axon development +GO:0061572,actin filament bundle organization +GO:0061582,intestinal epithelial cell migration +GO:0061588,calcium activated phospholipid scrambling +GO:0061589,calcium activated phosphatidylserine scrambling +GO:0061590,calcium activated phosphatidylcholine scrambling +GO:0061591,calcium activated galactosylceramide scrambling +GO:0061615,glycolytic process through fructose-6-phosphate +GO:0061620,glycolytic process through glucose-6-phosphate +GO:0061621,canonical glycolysis +GO:0061624,fructose catabolic process to hydroxyacetone phosphate and glyceraldehyde-3-phosphate +GO:0061626,pharyngeal arch artery morphogenesis +GO:0061635,regulation of protein complex stability +GO:0061640,cytoskeleton-dependent cytokinesis +GO:0061641,CENP-A containing chromatin organization +GO:0061643,chemorepulsion of axon +GO:0061647,histone H3-K9 modification +GO:0061668,mitochondrial ribosome assembly +GO:0061669,spontaneous neurotransmitter secretion +GO:0061684,chaperone-mediated autophagy +GO:0061687,detoxification of inorganic compound +GO:0061718,glucose catabolic process to pyruvate +GO:0061726,mitochondrion disassembly +GO:0061727,methylglyoxal catabolic process to lactate +GO:0061732,mitochondrial acetyl-CoA biosynthetic process from pyruvate +GO:0061737,leukotriene signaling pathway +GO:0065001,specification of axis polarity +GO:0065002,intracellular protein transmembrane transport +GO:0065004,protein-DNA complex assembly +GO:0065005,protein-lipid complex assembly +GO:0065006,protein-carbohydrate complex assembly +GO:0070050,neuron cellular homeostasis +GO:0070059,intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress +GO:0070070,proton-transporting V-type ATPase complex assembly +GO:0070071,proton-transporting two-sector ATPase complex assembly +GO:0070072,vacuolar proton-transporting V-type ATPase complex assembly +GO:0070075,tear secretion +GO:0070076,histone lysine demethylation +GO:0070085,glycosylation +GO:0070086,ubiquitin-dependent endocytosis +GO:0070092,regulation of glucagon secretion +GO:0070093,negative regulation of glucagon secretion +GO:0070096,mitochondrial outer membrane translocase complex assembly +GO:0070098,chemokine-mediated signaling pathway +GO:0070099,regulation of chemokine-mediated signaling pathway +GO:0070100,negative regulation of chemokine-mediated signaling pathway +GO:0070101,positive regulation of chemokine-mediated signaling pathway +GO:0070102,interleukin-6-mediated signaling pathway +GO:0070103,regulation of interleukin-6-mediated signaling pathway +GO:0070104,negative regulation of interleukin-6-mediated signaling pathway +GO:0070106,interleukin-27-mediated signaling pathway +GO:0070120,ciliary neurotrophic factor-mediated signaling pathway +GO:0070124,mitochondrial translational initiation +GO:0070125,mitochondrial translational elongation +GO:0070126,mitochondrial translational termination +GO:0070127,tRNA aminoacylation for mitochondrial protein translation +GO:0070129,regulation of mitochondrial translation +GO:0070131,positive regulation of mitochondrial translation +GO:0070141,response to UV-A +GO:0070163,regulation of adiponectin secretion +GO:0070164,negative regulation of adiponectin secretion +GO:0070165,positive regulation of adiponectin secretion +GO:0070166,enamel mineralization +GO:0070167,regulation of biomineral tissue development +GO:0070168,negative regulation of biomineral tissue development +GO:0070169,positive regulation of biomineral tissue development +GO:0070170,regulation of tooth mineralization +GO:0070171,negative regulation of tooth mineralization +GO:0070172,positive regulation of tooth mineralization +GO:0070173,regulation of enamel mineralization +GO:0070178,D-serine metabolic process +GO:0070189,kynurenine metabolic process +GO:0070192,chromosome organization involved in meiotic cell cycle +GO:0070193,synaptonemal complex organization +GO:0070194,synaptonemal complex disassembly +GO:0070197,meiotic attachment of telomere to nuclear envelope +GO:0070198,"protein localization to chromosome, telomeric region" +GO:0070199,establishment of protein localization to chromosome +GO:0070200,establishment of protein localization to telomere +GO:0070201,regulation of establishment of protein localization +GO:0070202,regulation of establishment of protein localization to chromosome +GO:0070203,regulation of establishment of protein localization to telomere +GO:0070206,protein trimerization +GO:0070207,protein homotrimerization +GO:0070208,protein heterotrimerization +GO:0070212,protein poly-ADP-ribosylation +GO:0070213,protein auto-ADP-ribosylation +GO:0070221,"sulfide oxidation, using sulfide:quinone oxidoreductase" +GO:0070227,lymphocyte apoptotic process +GO:0070228,regulation of lymphocyte apoptotic process +GO:0070229,negative regulation of lymphocyte apoptotic process +GO:0070230,positive regulation of lymphocyte apoptotic process +GO:0070231,T cell apoptotic process +GO:0070232,regulation of T cell apoptotic process +GO:0070233,negative regulation of T cell apoptotic process +GO:0070234,positive regulation of T cell apoptotic process +GO:0070235,regulation of activation-induced cell death of T cells +GO:0070236,negative regulation of activation-induced cell death of T cells +GO:0070242,thymocyte apoptotic process +GO:0070243,regulation of thymocyte apoptotic process +GO:0070244,negative regulation of thymocyte apoptotic process +GO:0070245,positive regulation of thymocyte apoptotic process +GO:0070252,actin-mediated cell contraction +GO:0070253,somatostatin secretion +GO:0070254,mucus secretion +GO:0070255,regulation of mucus secretion +GO:0070256,negative regulation of mucus secretion +GO:0070257,positive regulation of mucus secretion +GO:0070262,peptidyl-serine dephosphorylation +GO:0070265,necrotic cell death +GO:0070266,necroptotic process +GO:0070268,cornification +GO:0070269,pyroptosis +GO:0070272,proton-transporting ATP synthase complex biogenesis +GO:0070278,extracellular matrix constituent secretion +GO:0070286,axonemal dynein complex assembly +GO:0070293,renal absorption +GO:0070294,renal sodium ion absorption +GO:0070295,renal water absorption +GO:0070296,sarcoplasmic reticulum calcium ion transport +GO:0070301,cellular response to hydrogen peroxide +GO:0070302,regulation of stress-activated protein kinase signaling cascade +GO:0070303,negative regulation of stress-activated protein kinase signaling cascade +GO:0070304,positive regulation of stress-activated protein kinase signaling cascade +GO:0070305,response to cGMP +GO:0070306,lens fiber cell differentiation +GO:0070307,lens fiber cell development +GO:0070309,lens fiber cell morphogenesis +GO:0070314,G1 to G0 transition +GO:0070315,G1 to G0 transition involved in cell differentiation +GO:0070316,regulation of G0 to G1 transition +GO:0070317,negative regulation of G0 to G1 transition +GO:0070318,positive regulation of G0 to G1 transition +GO:0070327,thyroid hormone transport +GO:0070328,triglyceride homeostasis +GO:0070339,response to bacterial lipopeptide +GO:0070340,detection of bacterial lipopeptide +GO:0070344,regulation of fat cell proliferation +GO:0070345,negative regulation of fat cell proliferation +GO:0070346,positive regulation of fat cell proliferation +GO:0070350,regulation of white fat cell proliferation +GO:0070358,actin polymerization-dependent cell motility +GO:0070365,hepatocyte differentiation +GO:0070366,regulation of hepatocyte differentiation +GO:0070368,positive regulation of hepatocyte differentiation +GO:0070370,cellular heat acclimation +GO:0070371,ERK1 and ERK2 cascade +GO:0070372,regulation of ERK1 and ERK2 cascade +GO:0070373,negative regulation of ERK1 and ERK2 cascade +GO:0070374,positive regulation of ERK1 and ERK2 cascade +GO:0070375,ERK5 cascade +GO:0070383,DNA cytosine deamination +GO:0070384,Harderian gland development +GO:0070389,chaperone cofactor-dependent protein refolding +GO:0070391,response to lipoteichoic acid +GO:0070417,cellular response to cold +GO:0070423,nucleotide-binding oligomerization domain containing signaling pathway +GO:0070424,regulation of nucleotide-binding oligomerization domain containing signaling pathway +GO:0070425,negative regulation of nucleotide-binding oligomerization domain containing signaling pathway +GO:0070426,positive regulation of nucleotide-binding oligomerization domain containing signaling pathway +GO:0070427,nucleotide-binding oligomerization domain containing 1 signaling pathway +GO:0070428,regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway +GO:0070431,nucleotide-binding oligomerization domain containing 2 signaling pathway +GO:0070432,regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway +GO:0070433,negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway +GO:0070434,positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway +GO:0070445,regulation of oligodendrocyte progenitor proliferation +GO:0070458,cellular detoxification of nitrogen compound +GO:0070459,prolactin secretion +GO:0070472,regulation of uterine smooth muscle contraction +GO:0070473,negative regulation of uterine smooth muscle contraction +GO:0070474,positive regulation of uterine smooth muscle contraction +GO:0070475,rRNA base methylation +GO:0070482,response to oxygen levels +GO:0070483,detection of hypoxia +GO:0070486,leukocyte aggregation +GO:0070487,monocyte aggregation +GO:0070488,neutrophil aggregation +GO:0070489,T cell aggregation +GO:0070493,thrombin receptor signaling pathway +GO:0070498,interleukin-1-mediated signaling pathway +GO:0070507,regulation of microtubule cytoskeleton organization +GO:0070508,cholesterol import +GO:0070509,calcium ion import +GO:0070525,tRNA threonylcarbamoyladenosine metabolic process +GO:0070527,platelet aggregation +GO:0070528,protein kinase C signaling +GO:0070534,protein K63-linked ubiquitination +GO:0070535,histone H2A K63-linked ubiquitination +GO:0070536,protein K63-linked deubiquitination +GO:0070537,histone H2A K63-linked deubiquitination +GO:0070541,response to platinum ion +GO:0070542,response to fatty acid +GO:0070543,response to linoleic acid +GO:0070544,histone H3-K36 demethylation +GO:0070555,response to interleukin-1 +GO:0070560,protein secretion by platelet +GO:0070561,vitamin D receptor signaling pathway +GO:0070562,regulation of vitamin D receptor signaling pathway +GO:0070563,negative regulation of vitamin D receptor signaling pathway +GO:0070564,positive regulation of vitamin D receptor signaling pathway +GO:0070570,regulation of neuron projection regeneration +GO:0070571,negative regulation of neuron projection regeneration +GO:0070572,positive regulation of neuron projection regeneration +GO:0070574,cadmium ion transmembrane transport +GO:0070584,mitochondrion morphogenesis +GO:0070585,protein localization to mitochondrion +GO:0070587,regulation of cell-cell adhesion involved in gastrulation +GO:0070588,calcium ion transmembrane transport +GO:0070589,cellular component macromolecule biosynthetic process +GO:0070601,centromeric sister chromatid cohesion +GO:0070602,regulation of centromeric sister chromatid cohesion +GO:0070613,regulation of protein processing +GO:0070627,ferrous iron import +GO:0070633,transepithelial transport +GO:0070634,transepithelial ammonium transport +GO:0070640,vitamin D3 metabolic process +GO:0070646,protein modification by small protein removal +GO:0070647,protein modification by small protein conjugation or removal +GO:0070649,formin-nucleated actin cable assembly +GO:0070661,leukocyte proliferation +GO:0070663,regulation of leukocyte proliferation +GO:0070664,negative regulation of leukocyte proliferation +GO:0070665,positive regulation of leukocyte proliferation +GO:0070666,regulation of mast cell proliferation +GO:0070668,positive regulation of mast cell proliferation +GO:0070669,response to interleukin-2 +GO:0070670,response to interleukin-4 +GO:0070671,response to interleukin-12 +GO:0070672,response to interleukin-15 +GO:0070673,response to interleukin-18 +GO:0070676,intralumenal vesicle formation +GO:0070681,glutaminyl-tRNAGln biosynthesis via transamidation +GO:0070682,proteasome regulatory particle assembly +GO:0070723,response to cholesterol +GO:0070734,histone H3-K27 methylation +GO:0070741,response to interleukin-6 +GO:0070777,D-aspartate transport +GO:0070778,L-aspartate transport +GO:0070779,D-aspartate import +GO:0070781,response to biotin +GO:0070813,hydrogen sulfide metabolic process +GO:0070814,hydrogen sulfide biosynthetic process +GO:0070816,phosphorylation of RNA polymerase II C-terminal domain +GO:0070827,chromatin maintenance +GO:0070828,heterochromatin organization +GO:0070829,heterochromatin maintenance +GO:0070830,bicellular tight junction assembly +GO:0070831,basement membrane assembly +GO:0070836,caveola assembly +GO:0070837,dehydroascorbic acid transport +GO:0070838,divalent metal ion transport +GO:0070839,divalent metal ion export +GO:0070841,inclusion body assembly +GO:0070842,aggresome assembly +GO:0070848,response to growth factor +GO:0070849,response to epidermal growth factor +GO:0070857,regulation of bile acid biosynthetic process +GO:0070858,negative regulation of bile acid biosynthetic process +GO:0070861,regulation of protein exit from endoplasmic reticulum +GO:0070862,negative regulation of protein exit from endoplasmic reticulum +GO:0070863,positive regulation of protein exit from endoplasmic reticulum +GO:0070873,regulation of glycogen metabolic process +GO:0070874,negative regulation of glycogen metabolic process +GO:0070875,positive regulation of glycogen metabolic process +GO:0070884,regulation of calcineurin-NFAT signaling cascade +GO:0070885,negative regulation of calcineurin-NFAT signaling cascade +GO:0070886,positive regulation of calcineurin-NFAT signaling cascade +GO:0070889,platelet alpha granule organization +GO:0070894,regulation of transposon integration +GO:0070895,negative regulation of transposon integration +GO:0070897,DNA-templated transcriptional preinitiation complex assembly +GO:0070900,mitochondrial tRNA modification +GO:0070901,mitochondrial tRNA methylation +GO:0070904,transepithelial L-ascorbic acid transport +GO:0070911,global genome nucleotide-excision repair +GO:0070914,UV-damage excision repair +GO:0070918,production of small RNA involved in gene silencing by RNA +GO:0070920,regulation of production of small RNA involved in gene silencing by RNA +GO:0070922,small RNA loading onto RISC +GO:0070925,organelle assembly +GO:0070932,histone H3 deacetylation +GO:0070933,histone H4 deacetylation +GO:0070934,CRD-mediated mRNA stabilization +GO:0070935,3'-UTR-mediated mRNA stabilization +GO:0070936,protein K48-linked ubiquitination +GO:0070940,dephosphorylation of RNA polymerase II C-terminal domain +GO:0070942,neutrophil mediated cytotoxicity +GO:0070943,neutrophil mediated killing of symbiont cell +GO:0070944,neutrophil mediated killing of bacterium +GO:0070945,neutrophil mediated killing of gram-negative bacterium +GO:0070946,neutrophil mediated killing of gram-positive bacterium +GO:0070947,neutrophil mediated killing of fungus +GO:0070966,"nuclear-transcribed mRNA catabolic process, no-go decay" +GO:0070970,interleukin-2 secretion +GO:0070972,protein localization to endoplasmic reticulum +GO:0070973,protein localization to endoplasmic reticulum exit site +GO:0070977,bone maturation +GO:0070979,protein K11-linked ubiquitination +GO:0070986,left/right axis specification +GO:0070987,error-free translesion synthesis +GO:0070988,demethylation +GO:0070989,oxidative demethylation +GO:0070995,NADPH oxidation +GO:0070997,neuron death +GO:0071000,response to magnetism +GO:0071025,RNA surveillance +GO:0071027,nuclear RNA surveillance +GO:0071028,nuclear mRNA surveillance +GO:0071029,nuclear ncRNA surveillance +GO:0071030,nuclear mRNA surveillance of spliceosomal pre-mRNA splicing +GO:0071031,nuclear mRNA surveillance of mRNA 3'-end processing +GO:0071033,nuclear retention of pre-mRNA at the site of transcription +GO:0071034,CUT catabolic process +GO:0071035,nuclear polyadenylation-dependent rRNA catabolic process +GO:0071038,nuclear polyadenylation-dependent tRNA catabolic process +GO:0071042,nuclear polyadenylation-dependent mRNA catabolic process +GO:0071043,CUT metabolic process +GO:0071044,histone mRNA catabolic process +GO:0071046,nuclear polyadenylation-dependent ncRNA catabolic process +GO:0071047,polyadenylation-dependent mRNA catabolic process +GO:0071048,nuclear retention of unspliced pre-mRNA at the site of transcription +GO:0071049,nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription +GO:0071051,polyadenylation-dependent snoRNA 3'-end processing +GO:0071071,regulation of phospholipid biosynthetic process +GO:0071072,negative regulation of phospholipid biosynthetic process +GO:0071073,positive regulation of phospholipid biosynthetic process +GO:0071103,DNA conformation change +GO:0071104,response to interleukin-9 +GO:0071105,response to interleukin-11 +GO:0071106,"adenosine 3',5'-bisphosphate transmembrane transport" +GO:0071107,response to parathyroid hormone +GO:0071108,protein K48-linked deubiquitination +GO:0071109,superior temporal gyrus development +GO:0071139,resolution of recombination intermediates +GO:0071140,resolution of mitotic recombination intermediates +GO:0071156,regulation of cell cycle arrest +GO:0071157,negative regulation of cell cycle arrest +GO:0071158,positive regulation of cell cycle arrest +GO:0071166,ribonucleoprotein complex localization +GO:0071167,ribonucleoprotein complex import into nucleus +GO:0071168,protein localization to chromatin +GO:0071169,establishment of protein localization to chromatin +GO:0071173,spindle assembly checkpoint +GO:0071174,mitotic spindle checkpoint +GO:0071205,protein localization to juxtaparanode region of axon +GO:0071211,protein targeting to vacuole involved in autophagy +GO:0071214,cellular response to abiotic stimulus +GO:0071216,cellular response to biotic stimulus +GO:0071218,cellular response to misfolded protein +GO:0071219,cellular response to molecule of bacterial origin +GO:0071220,cellular response to bacterial lipoprotein +GO:0071221,cellular response to bacterial lipopeptide +GO:0071222,cellular response to lipopolysaccharide +GO:0071223,cellular response to lipoteichoic acid +GO:0071224,cellular response to peptidoglycan +GO:0071225,cellular response to muramyl dipeptide +GO:0071226,cellular response to molecule of fungal origin +GO:0071229,cellular response to acid chemical +GO:0071230,cellular response to amino acid stimulus +GO:0071231,cellular response to folic acid +GO:0071233,cellular response to leucine +GO:0071236,cellular response to antibiotic +GO:0071241,cellular response to inorganic substance +GO:0071242,cellular response to ammonium ion +GO:0071243,cellular response to arsenic-containing substance +GO:0071245,cellular response to carbon monoxide +GO:0071248,cellular response to metal ion +GO:0071250,cellular response to nitrite +GO:0071257,cellular response to electrical stimulus +GO:0071259,cellular response to magnetism +GO:0071260,cellular response to mechanical stimulus +GO:0071262,regulation of translational initiation in response to starvation +GO:0071264,positive regulation of translational initiation in response to starvation +GO:0071265,L-methionine biosynthetic process +GO:0071267,L-methionine salvage +GO:0071276,cellular response to cadmium ion +GO:0071277,cellular response to calcium ion +GO:0071279,cellular response to cobalt ion +GO:0071280,cellular response to copper ion +GO:0071281,cellular response to iron ion +GO:0071284,cellular response to lead ion +GO:0071285,cellular response to lithium ion +GO:0071286,cellular response to magnesium ion +GO:0071287,cellular response to manganese ion +GO:0071288,cellular response to mercury ion +GO:0071294,cellular response to zinc ion +GO:0071295,cellular response to vitamin +GO:0071300,cellular response to retinoic acid +GO:0071305,cellular response to vitamin D +GO:0071306,cellular response to vitamin E +GO:0071307,cellular response to vitamin K +GO:0071312,cellular response to alkaloid +GO:0071313,cellular response to caffeine +GO:0071314,cellular response to cocaine +GO:0071315,cellular response to morphine +GO:0071316,cellular response to nicotine +GO:0071317,cellular response to isoquinoline alkaloid +GO:0071318,cellular response to ATP +GO:0071320,cellular response to cAMP +GO:0071321,cellular response to cGMP +GO:0071322,cellular response to carbohydrate stimulus +GO:0071326,cellular response to monosaccharide stimulus +GO:0071331,cellular response to hexose stimulus +GO:0071332,cellular response to fructose stimulus +GO:0071333,cellular response to glucose stimulus +GO:0071336,regulation of hair follicle cell proliferation +GO:0071338,positive regulation of hair follicle cell proliferation +GO:0071340,skeletal muscle acetylcholine-gated channel clustering +GO:0071344,diphosphate metabolic process +GO:0071345,cellular response to cytokine stimulus +GO:0071346,cellular response to interferon-gamma +GO:0071347,cellular response to interleukin-1 +GO:0071349,cellular response to interleukin-12 +GO:0071351,cellular response to interleukin-18 +GO:0071352,cellular response to interleukin-2 +GO:0071353,cellular response to interleukin-4 +GO:0071354,cellular response to interleukin-6 +GO:0071356,cellular response to tumor necrosis factor +GO:0071357,cellular response to type I interferon +GO:0071359,cellular response to dsRNA +GO:0071360,cellular response to exogenous dsRNA +GO:0071361,cellular response to ethanol +GO:0071362,cellular response to ether +GO:0071363,cellular response to growth factor stimulus +GO:0071364,cellular response to epidermal growth factor stimulus +GO:0071371,cellular response to gonadotropin stimulus +GO:0071372,cellular response to follicle-stimulating hormone stimulus +GO:0071373,cellular response to luteinizing hormone stimulus +GO:0071374,cellular response to parathyroid hormone stimulus +GO:0071375,cellular response to peptide hormone stimulus +GO:0071376,cellular response to corticotropin-releasing hormone stimulus +GO:0071377,cellular response to glucagon stimulus +GO:0071378,cellular response to growth hormone stimulus +GO:0071379,cellular response to prostaglandin stimulus +GO:0071380,cellular response to prostaglandin E stimulus +GO:0071383,cellular response to steroid hormone stimulus +GO:0071384,cellular response to corticosteroid stimulus +GO:0071385,cellular response to glucocorticoid stimulus +GO:0071386,cellular response to corticosterone stimulus +GO:0071389,cellular response to mineralocorticoid stimulus +GO:0071391,cellular response to estrogen stimulus +GO:0071392,cellular response to estradiol stimulus +GO:0071393,cellular response to progesterone stimulus +GO:0071394,cellular response to testosterone stimulus +GO:0071395,cellular response to jasmonic acid stimulus +GO:0071396,cellular response to lipid +GO:0071397,cellular response to cholesterol +GO:0071398,cellular response to fatty acid +GO:0071400,cellular response to oleic acid +GO:0071402,cellular response to lipoprotein particle stimulus +GO:0071403,cellular response to high density lipoprotein particle stimulus +GO:0071404,cellular response to low-density lipoprotein particle stimulus +GO:0071407,cellular response to organic cyclic compound +GO:0071409,cellular response to cycloheximide +GO:0071415,cellular response to purine-containing compound +GO:0071417,cellular response to organonitrogen compound +GO:0071418,cellular response to amine stimulus +GO:0071420,cellular response to histamine +GO:0071421,manganese ion transmembrane transport +GO:0071422,succinate transmembrane transport +GO:0071425,hematopoietic stem cell proliferation +GO:0071426,ribonucleoprotein complex export from nucleus +GO:0071427,mRNA-containing ribonucleoprotein complex export from nucleus +GO:0071428,rRNA-containing ribonucleoprotein complex export from nucleus +GO:0071431,tRNA-containing ribonucleoprotein complex export from nucleus +GO:0071435,potassium ion export +GO:0071436,sodium ion export +GO:0071440,regulation of histone H3-K14 acetylation +GO:0071442,positive regulation of histone H3-K14 acetylation +GO:0071444,cellular response to pheromone +GO:0071447,cellular response to hydroperoxide +GO:0071450,cellular response to oxygen radical +GO:0071451,cellular response to superoxide +GO:0071453,cellular response to oxygen levels +GO:0071454,cellular response to anoxia +GO:0071455,cellular response to hyperoxia +GO:0071456,cellular response to hypoxia +GO:0071459,"protein localization to chromosome, centromeric region" +GO:0071460,cellular response to cell-matrix adhesion +GO:0071461,cellular response to redox state +GO:0071462,cellular response to water stimulus +GO:0071464,cellular response to hydrostatic pressure +GO:0071466,cellular response to xenobiotic stimulus +GO:0071467,cellular response to pH +GO:0071468,cellular response to acidic pH +GO:0071469,cellular response to alkaline pH +GO:0071470,cellular response to osmotic stress +GO:0071472,cellular response to salt stress +GO:0071474,cellular hyperosmotic response +GO:0071476,cellular hypotonic response +GO:0071478,cellular response to radiation +GO:0071479,cellular response to ionizing radiation +GO:0071480,cellular response to gamma radiation +GO:0071481,cellular response to X-ray +GO:0071482,cellular response to light stimulus +GO:0071483,cellular response to blue light +GO:0071492,cellular response to UV-A +GO:0071493,cellular response to UV-B +GO:0071494,cellular response to UV-C +GO:0071496,cellular response to external stimulus +GO:0071498,cellular response to fluid shear stress +GO:0071499,cellular response to laminar fluid shear stress +GO:0071500,cellular response to nitrosative stress +GO:0071501,cellular response to sterol depletion +GO:0071502,cellular response to temperature stimulus +GO:0071503,response to heparin +GO:0071504,cellular response to heparin +GO:0071505,response to mycophenolic acid +GO:0071506,cellular response to mycophenolic acid +GO:0071514,genetic imprinting +GO:0071526,semaphorin-plexin signaling pathway +GO:0071529,cementum mineralization +GO:0071539,protein localization to centrosome +GO:0071542,dopaminergic neuron differentiation +GO:0071545,inositol phosphate catabolic process +GO:0071548,response to dexamethasone +GO:0071549,cellular response to dexamethasone stimulus +GO:0071550,death-inducing signaling complex assembly +GO:0071554,cell wall organization or biogenesis +GO:0071557,histone H3-K27 demethylation +GO:0071559,response to transforming growth factor beta +GO:0071560,cellular response to transforming growth factor beta stimulus +GO:0071569,protein ufmylation +GO:0071577,zinc II ion transmembrane transport +GO:0071578,zinc II ion transmembrane import +GO:0071579,regulation of zinc ion transport +GO:0071580,regulation of zinc ion transmembrane transport +GO:0071582,negative regulation of zinc ion transport +GO:0071583,negative regulation of zinc ion transmembrane transport +GO:0071586,CAAX-box protein processing +GO:0071593,lymphocyte aggregation +GO:0071594,thymocyte aggregation +GO:0071596,ubiquitin-dependent protein catabolic process via the N-end rule pathway +GO:0071599,otic vesicle development +GO:0071600,otic vesicle morphogenesis +GO:0071603,endothelial cell-cell adhesion +GO:0071616,acyl-CoA biosynthetic process +GO:0071621,granulocyte chemotaxis +GO:0071622,regulation of granulocyte chemotaxis +GO:0071623,negative regulation of granulocyte chemotaxis +GO:0071624,positive regulation of granulocyte chemotaxis +GO:0071625,vocalization behavior +GO:0071634,regulation of transforming growth factor beta production +GO:0071635,negative regulation of transforming growth factor beta production +GO:0071636,positive regulation of transforming growth factor beta production +GO:0071637,regulation of monocyte chemotactic protein-1 production +GO:0071638,negative regulation of monocyte chemotactic protein-1 production +GO:0071639,positive regulation of monocyte chemotactic protein-1 production +GO:0071649,regulation of chemokine (C-C motif) ligand 5 production +GO:0071650,negative regulation of chemokine (C-C motif) ligand 5 production +GO:0071651,positive regulation of chemokine (C-C motif) ligand 5 production +GO:0071655,regulation of granulocyte colony-stimulating factor production +GO:0071657,positive regulation of granulocyte colony-stimulating factor production +GO:0071661,regulation of granzyme B production +GO:0071663,positive regulation of granzyme B production +GO:0071670,smooth muscle cell chemotaxis +GO:0071671,regulation of smooth muscle cell chemotaxis +GO:0071672,negative regulation of smooth muscle cell chemotaxis +GO:0071673,positive regulation of smooth muscle cell chemotaxis +GO:0071674,mononuclear cell migration +GO:0071675,regulation of mononuclear cell migration +GO:0071676,negative regulation of mononuclear cell migration +GO:0071677,positive regulation of mononuclear cell migration +GO:0071679,commissural neuron axon guidance +GO:0071680,response to indole-3-methanol +GO:0071681,cellular response to indole-3-methanol +GO:0071684,organism emergence from protective structure +GO:0071688,striated muscle myosin thick filament assembly +GO:0071692,protein localization to extracellular region +GO:0071694,maintenance of protein location in extracellular region +GO:0071695,anatomical structure maturation +GO:0071696,ectodermal placode development +GO:0071697,ectodermal placode morphogenesis +GO:0071698,olfactory placode development +GO:0071699,olfactory placode morphogenesis +GO:0071705,nitrogen compound transport +GO:0071706,tumor necrosis factor superfamily cytokine production +GO:0071709,membrane assembly +GO:0071711,basement membrane organization +GO:0071712,ER-associated misfolded protein catabolic process +GO:0071715,icosanoid transport +GO:0071724,response to diacyl bacterial lipopeptide +GO:0071725,response to triacyl bacterial lipopeptide +GO:0071726,cellular response to diacyl bacterial lipopeptide +GO:0071727,cellular response to triacyl bacterial lipopeptide +GO:0071731,response to nitric oxide +GO:0071732,cellular response to nitric oxide +GO:0071733,transcriptional activation by promoter-enhancer looping +GO:0071763,nuclear membrane organization +GO:0071772,response to BMP +GO:0071773,cellular response to BMP stimulus +GO:0071774,response to fibroblast growth factor +GO:0071786,endoplasmic reticulum tubular network organization +GO:0071798,response to prostaglandin D +GO:0071799,cellular response to prostaglandin D stimulus +GO:0071800,podosome assembly +GO:0071801,regulation of podosome assembly +GO:0071803,positive regulation of podosome assembly +GO:0071804,cellular potassium ion transport +GO:0071805,potassium ion transmembrane transport +GO:0071806,protein transmembrane transport +GO:0071810,regulation of fever generation by regulation of prostaglandin secretion +GO:0071812,positive regulation of fever generation by positive regulation of prostaglandin secretion +GO:0071816,tail-anchored membrane protein insertion into ER membrane +GO:0071823,protein-carbohydrate complex subunit organization +GO:0071824,protein-DNA complex subunit organization +GO:0071825,protein-lipid complex subunit organization +GO:0071826,ribonucleoprotein complex subunit organization +GO:0071827,plasma lipoprotein particle organization +GO:0071830,triglyceride-rich lipoprotein particle clearance +GO:0071847,TNFSF11-mediated signaling pathway +GO:0071848,positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling +GO:0071850,mitotic cell cycle arrest +GO:0071863,regulation of cell proliferation in bone marrow +GO:0071864,positive regulation of cell proliferation in bone marrow +GO:0071865,regulation of apoptotic process in bone marrow +GO:0071866,negative regulation of apoptotic process in bone marrow +GO:0071867,response to monoamine +GO:0071868,cellular response to monoamine stimulus +GO:0071869,response to catecholamine +GO:0071870,cellular response to catecholamine stimulus +GO:0071871,response to epinephrine +GO:0071872,cellular response to epinephrine stimulus +GO:0071873,response to norepinephrine +GO:0071874,cellular response to norepinephrine stimulus +GO:0071875,adrenergic receptor signaling pathway +GO:0071877,regulation of adrenergic receptor signaling pathway +GO:0071878,negative regulation of adrenergic receptor signaling pathway +GO:0071879,positive regulation of adrenergic receptor signaling pathway +GO:0071880,adenylate cyclase-activating adrenergic receptor signaling pathway +GO:0071883,activation of MAPK activity by adrenergic receptor signaling pathway +GO:0071887,leukocyte apoptotic process +GO:0071888,macrophage apoptotic process +GO:0071895,odontoblast differentiation +GO:0071896,protein localization to adherens junction +GO:0071897,DNA biosynthetic process +GO:0071898,regulation of estrogen receptor binding +GO:0071899,negative regulation of estrogen receptor binding +GO:0071900,regulation of protein serine/threonine kinase activity +GO:0071901,negative regulation of protein serine/threonine kinase activity +GO:0071902,positive regulation of protein serine/threonine kinase activity +GO:0071907,determination of digestive tract left/right asymmetry +GO:0071910,determination of liver left/right asymmetry +GO:0071918,urea transmembrane transport +GO:0071922,regulation of cohesin localization to chromatin +GO:0071929,alpha-tubulin acetylation +GO:0071930,negative regulation of transcription involved in G1/S transition of mitotic cell cycle +GO:0071931,positive regulation of transcription involved in G1/S transition of mitotic cell cycle +GO:0071934,thiamine transmembrane transport +GO:0071941,nitrogen cycle metabolic process +GO:0071947,protein deubiquitination involved in ubiquitin-dependent protein catabolic process +GO:0071954,chemokine (C-C motif) ligand 11 production +GO:0071955,recycling endosome to Golgi transport +GO:0071973,bacterial-type flagellum-dependent cell motility +GO:0071985,multivesicular body sorting pathway +GO:0072001,renal system development +GO:0072003,kidney rudiment formation +GO:0072004,kidney field specification +GO:0072006,nephron development +GO:0072007,mesangial cell differentiation +GO:0072008,glomerular mesangial cell differentiation +GO:0072009,nephron epithelium development +GO:0072010,glomerular epithelium development +GO:0072011,glomerular endothelium development +GO:0072012,glomerulus vasculature development +GO:0072014,proximal tubule development +GO:0072015,glomerular visceral epithelial cell development +GO:0072017,distal tubule development +GO:0072019,proximal convoluted tubule development +GO:0072021,ascending thin limb development +GO:0072023,thick ascending limb development +GO:0072025,distal convoluted tubule development +GO:0072028,nephron morphogenesis +GO:0072033,renal vesicle formation +GO:0072034,renal vesicle induction +GO:0072038,mesenchymal stem cell maintenance involved in nephron morphogenesis +GO:0072039,regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis +GO:0072040,negative regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis +GO:0072044,collecting duct development +GO:0072047,proximal/distal pattern formation involved in nephron development +GO:0072048,renal system pattern specification +GO:0072049,comma-shaped body morphogenesis +GO:0072050,S-shaped body morphogenesis +GO:0072053,renal inner medulla development +GO:0072054,renal outer medulla development +GO:0072061,inner medullary collecting duct development +GO:0072070,loop of Henle development +GO:0072071,kidney interstitial fibroblast differentiation +GO:0072073,kidney epithelium development +GO:0072074,kidney mesenchyme development +GO:0072075,metanephric mesenchyme development +GO:0072076,nephrogenic mesenchyme development +GO:0072077,renal vesicle morphogenesis +GO:0072078,nephron tubule morphogenesis +GO:0072079,nephron tubule formation +GO:0072080,nephron tubule development +GO:0072081,specification of nephron tubule identity +GO:0072086,specification of loop of Henle identity +GO:0072087,renal vesicle development +GO:0072088,nephron epithelium morphogenesis +GO:0072089,stem cell proliferation +GO:0072091,regulation of stem cell proliferation +GO:0072092,ureteric bud invasion +GO:0072093,metanephric renal vesicle formation +GO:0072095,regulation of branch elongation involved in ureteric bud branching +GO:0072098,anterior/posterior pattern specification involved in kidney development +GO:0072102,glomerulus morphogenesis +GO:0072103,glomerulus vasculature morphogenesis +GO:0072104,glomerular capillary formation +GO:0072106,regulation of ureteric bud formation +GO:0072107,positive regulation of ureteric bud formation +GO:0072108,positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis +GO:0072109,glomerular mesangium development +GO:0072110,glomerular mesangial cell proliferation +GO:0072111,cell proliferation involved in kidney development +GO:0072112,glomerular visceral epithelial cell differentiation +GO:0072114,pronephros morphogenesis +GO:0072124,regulation of glomerular mesangial cell proliferation +GO:0072125,negative regulation of glomerular mesangial cell proliferation +GO:0072126,positive regulation of glomerular mesangial cell proliferation +GO:0072131,kidney mesenchyme morphogenesis +GO:0072132,mesenchyme morphogenesis +GO:0072133,metanephric mesenchyme morphogenesis +GO:0072134,nephrogenic mesenchyme morphogenesis +GO:0072135,kidney mesenchymal cell proliferation +GO:0072136,metanephric mesenchymal cell proliferation involved in metanephros development +GO:0072138,mesenchymal cell proliferation involved in ureteric bud development +GO:0072139,glomerular parietal epithelial cell differentiation +GO:0072141,renal interstitial fibroblast development +GO:0072143,mesangial cell development +GO:0072144,glomerular mesangial cell development +GO:0072148,epithelial cell fate commitment +GO:0072156,distal tubule morphogenesis +GO:0072160,nephron tubule epithelial cell differentiation +GO:0072161,mesenchymal cell differentiation involved in kidney development +GO:0072162,metanephric mesenchymal cell differentiation +GO:0072163,mesonephric epithelium development +GO:0072164,mesonephric tubule development +GO:0072166,posterior mesonephric tubule development +GO:0072170,metanephric tubule development +GO:0072171,mesonephric tubule morphogenesis +GO:0072172,mesonephric tubule formation +GO:0072173,metanephric tubule morphogenesis +GO:0072174,metanephric tubule formation +GO:0072175,epithelial tube formation +GO:0072176,nephric duct development +GO:0072177,mesonephric duct development +GO:0072178,nephric duct morphogenesis +GO:0072179,nephric duct formation +GO:0072180,mesonephric duct morphogenesis +GO:0072181,mesonephric duct formation +GO:0072182,regulation of nephron tubule epithelial cell differentiation +GO:0072183,negative regulation of nephron tubule epithelial cell differentiation +GO:0072189,ureter development +GO:0072190,ureter urothelium development +GO:0072191,ureter smooth muscle development +GO:0072193,ureter smooth muscle cell differentiation +GO:0072194,kidney smooth muscle tissue development +GO:0072197,ureter morphogenesis +GO:0072199,regulation of mesenchymal cell proliferation involved in ureter development +GO:0072201,negative regulation of mesenchymal cell proliferation +GO:0072202,cell differentiation involved in metanephros development +GO:0072203,cell proliferation involved in metanephros development +GO:0072204,cell-cell signaling involved in metanephros development +GO:0072205,metanephric collecting duct development +GO:0072207,metanephric epithelium development +GO:0072208,metanephric smooth muscle tissue development +GO:0072209,metanephric mesangial cell differentiation +GO:0072210,metanephric nephron development +GO:0072215,regulation of metanephros development +GO:0072216,positive regulation of metanephros development +GO:0072217,negative regulation of metanephros development +GO:0072218,metanephric ascending thin limb development +GO:0072221,metanephric distal convoluted tubule development +GO:0072223,metanephric glomerular mesangium development +GO:0072224,metanephric glomerulus development +GO:0072229,metanephric proximal convoluted tubule development +GO:0072233,metanephric thick ascending limb development +GO:0072234,metanephric nephron tubule development +GO:0072235,metanephric distal tubule development +GO:0072236,metanephric loop of Henle development +GO:0072237,metanephric proximal tubule development +GO:0072239,metanephric glomerulus vasculature development +GO:0072243,metanephric nephron epithelium development +GO:0072244,metanephric glomerular epithelium development +GO:0072248,metanephric glomerular visceral epithelial cell differentiation +GO:0072249,metanephric glomerular visceral epithelial cell development +GO:0072254,metanephric glomerular mesangial cell differentiation +GO:0072268,pattern specification involved in metanephros development +GO:0072272,proximal/distal pattern formation involved in metanephric nephron development +GO:0072273,metanephric nephron morphogenesis +GO:0072275,metanephric glomerulus morphogenesis +GO:0072276,metanephric glomerulus vasculature morphogenesis +GO:0072277,metanephric glomerular capillary formation +GO:0072278,metanephric comma-shaped body morphogenesis +GO:0072282,metanephric nephron tubule morphogenesis +GO:0072283,metanephric renal vesicle morphogenesis +GO:0072284,metanephric S-shaped body morphogenesis +GO:0072289,metanephric nephron tubule formation +GO:0072298,regulation of metanephric glomerulus development +GO:0072300,positive regulation of metanephric glomerulus development +GO:0072301,regulation of metanephric glomerular mesangial cell proliferation +GO:0072304,regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis +GO:0072305,negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis +GO:0072307,regulation of metanephric nephron tubule epithelial cell differentiation +GO:0072310,glomerular epithelial cell development +GO:0072311,glomerular epithelial cell differentiation +GO:0072312,metanephric glomerular epithelial cell differentiation +GO:0072313,metanephric glomerular epithelial cell development +GO:0072318,clathrin coat disassembly +GO:0072319,vesicle uncoating +GO:0072321,chaperone-mediated protein transport +GO:0072329,monocarboxylic acid catabolic process +GO:0072330,monocarboxylic acid biosynthetic process +GO:0072331,signal transduction by p53 class mediator +GO:0072332,intrinsic apoptotic signaling pathway by p53 class mediator +GO:0072334,UDP-galactose transmembrane transport +GO:0072337,modified amino acid transport +GO:0072338,cellular lactam metabolic process +GO:0072344,rescue of stalled ribosome +GO:0072348,sulfur compound transport +GO:0072350,tricarboxylic acid metabolic process +GO:0072355,histone H3-T3 phosphorylation +GO:0072356,chromosome passenger complex localization to kinetochore +GO:0072358,cardiovascular system development +GO:0072359,circulatory system development +GO:0072361,regulation of glycolytic process by regulation of transcription from RNA polymerase II promoter +GO:0072363,regulation of glycolytic process by positive regulation of transcription from RNA polymerase II promoter +GO:0072364,regulation of cellular ketone metabolic process by regulation of transcription from RNA polymerase II promoter +GO:0072366,regulation of cellular ketone metabolic process by positive regulation of transcription from RNA polymerase II promoter +GO:0072367,regulation of lipid transport by regulation of transcription from RNA polymerase II promoter +GO:0072368,regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter +GO:0072369,regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter +GO:0072376,protein activation cascade +GO:0072378,"blood coagulation, fibrin clot formation" +GO:0072383,plus-end-directed vesicle transport along microtubule +GO:0072384,organelle transport along microtubule +GO:0072385,minus-end-directed organelle transport along microtubule +GO:0072386,plus-end-directed organelle transport along microtubule +GO:0072387,flavin adenine dinucleotide metabolic process +GO:0072393,microtubule anchoring at microtubule organizing center +GO:0072395,signal transduction involved in cell cycle checkpoint +GO:0072396,response to cell cycle checkpoint signaling +GO:0072401,signal transduction involved in DNA integrity checkpoint +GO:0072402,response to DNA integrity checkpoint signaling +GO:0072413,signal transduction involved in mitotic cell cycle checkpoint +GO:0072422,signal transduction involved in DNA damage checkpoint +GO:0072423,response to DNA damage checkpoint signaling +GO:0072429,response to intra-S DNA damage checkpoint signaling +GO:0072431,signal transduction involved in mitotic G1 DNA damage checkpoint +GO:0072488,ammonium transmembrane transport +GO:0072497,mesenchymal stem cell differentiation +GO:0072498,embryonic skeletal joint development +GO:0072501,cellular divalent inorganic anion homeostasis +GO:0072502,cellular trivalent inorganic anion homeostasis +GO:0072503,cellular divalent inorganic cation homeostasis +GO:0072505,divalent inorganic anion homeostasis +GO:0072506,trivalent inorganic anion homeostasis +GO:0072507,divalent inorganic cation homeostasis +GO:0072511,divalent inorganic cation transport +GO:0072512,trivalent inorganic cation transport +GO:0072513,positive regulation of secondary heart field cardioblast proliferation +GO:0072520,seminiferous tubule development +GO:0072521,purine-containing compound metabolic process +GO:0072522,purine-containing compound biosynthetic process +GO:0072523,purine-containing compound catabolic process +GO:0072524,pyridine-containing compound metabolic process +GO:0072525,pyridine-containing compound biosynthetic process +GO:0072526,pyridine-containing compound catabolic process +GO:0072527,pyrimidine-containing compound metabolic process +GO:0072528,pyrimidine-containing compound biosynthetic process +GO:0072529,pyrimidine-containing compound catabolic process +GO:0072530,purine-containing compound transmembrane transport +GO:0072531,pyrimidine-containing compound transmembrane transport +GO:0072537,fibroblast activation +GO:0072538,T-helper 17 type immune response +GO:0072539,T-helper 17 cell differentiation +GO:0072540,T-helper 17 cell lineage commitment +GO:0072553,terminal button organization +GO:0072554,blood vessel lumenization +GO:0072560,type B pancreatic cell maturation +GO:0072567,chemokine (C-X-C motif) ligand 2 production +GO:0072573,tolerance induction to lipopolysaccharide +GO:0072574,hepatocyte proliferation +GO:0072575,epithelial cell proliferation involved in liver morphogenesis +GO:0072576,liver morphogenesis +GO:0072577,endothelial cell apoptotic process +GO:0072578,neurotransmitter-gated ion channel clustering +GO:0072583,clathrin-mediated endocytosis +GO:0072584,caveolin-mediated endocytosis +GO:0072592,oxygen metabolic process +GO:0072593,reactive oxygen species metabolic process +GO:0072594,establishment of protein localization to organelle +GO:0072595,maintenance of protein localization in organelle +GO:0072599,establishment of protein localization to endoplasmic reticulum +GO:0072600,establishment of protein localization to Golgi +GO:0072602,interleukin-4 secretion +GO:0072604,interleukin-6 secretion +GO:0072606,interleukin-8 secretion +GO:0072610,interleukin-12 secretion +GO:0072643,interferon-gamma secretion +GO:0072655,establishment of protein localization to mitochondrion +GO:0072656,maintenance of protein location in mitochondrion +GO:0072657,protein localization to membrane +GO:0072659,protein localization to plasma membrane +GO:0072661,protein targeting to plasma membrane +GO:0072662,protein localization to peroxisome +GO:0072663,establishment of protein localization to peroxisome +GO:0072665,protein localization to vacuole +GO:0072666,establishment of protein localization to vacuole +GO:0072672,neutrophil extravasation +GO:0072673,lamellipodium morphogenesis +GO:0072674,multinuclear osteoclast differentiation +GO:0072675,osteoclast fusion +GO:0072676,lymphocyte migration +GO:0072677,eosinophil migration +GO:0072678,T cell migration +GO:0072695,regulation of DNA recombination at telomere +GO:0072697,protein localization to cell cortex +GO:0072698,protein localization to microtubule cytoskeleton +GO:0072702,response to methyl methanesulfonate +GO:0072703,cellular response to methyl methanesulfonate +GO:0072708,response to sorbitol +GO:0072709,cellular response to sorbitol +GO:0072710,response to hydroxyurea +GO:0072711,cellular response to hydroxyurea +GO:0072714,response to selenite ion +GO:0072718,response to cisplatin +GO:0072719,cellular response to cisplatin +GO:0072733,response to staurosporine +GO:0072734,cellular response to staurosporine +GO:0072757,cellular response to camptothecin +GO:0075136,response to host +GO:0075509,endocytosis involved in viral entry into host cell +GO:0075528,modulation by virus of host immune response +GO:0075713,establishment of integrated proviral latency +GO:0075732,viral penetration into host nucleus +GO:0075733,intracellular transport of virus +GO:0080009,mRNA methylation +GO:0080033,response to nitrite +GO:0080111,DNA demethylation +GO:0080120,CAAX-box protein maturation +GO:0080121,AMP transport +GO:0080135,regulation of cellular response to stress +GO:0080154,regulation of fertilization +GO:0080171,lytic vacuole organization +GO:0080182,histone H3-K4 trimethylation +GO:0080184,response to phenylpropanoid +GO:0085020,protein K6-linked ubiquitination +GO:0085029,extracellular matrix assembly +GO:0086001,cardiac muscle cell action potential +GO:0086002,cardiac muscle cell action potential involved in contraction +GO:0086003,cardiac muscle cell contraction +GO:0086004,regulation of cardiac muscle cell contraction +GO:0086005,ventricular cardiac muscle cell action potential +GO:0086009,membrane repolarization +GO:0086010,membrane depolarization during action potential +GO:0086011,membrane repolarization during action potential +GO:0086012,membrane depolarization during cardiac muscle cell action potential +GO:0086013,membrane repolarization during cardiac muscle cell action potential +GO:0086014,atrial cardiac muscle cell action potential +GO:0086015,SA node cell action potential +GO:0086016,AV node cell action potential +GO:0086017,Purkinje myocyte action potential +GO:0086018,SA node cell to atrial cardiac muscle cell signalling +GO:0086019,cell-cell signaling involved in cardiac conduction +GO:0086023,adrenergic receptor signaling pathway involved in heart process +GO:0086026,atrial cardiac muscle cell to AV node cell signaling +GO:0086027,AV node cell to bundle of His cell signaling +GO:0086028,bundle of His cell to Purkinje myocyte signaling +GO:0086029,Purkinje myocyte to ventricular cardiac muscle cell signaling +GO:0086036,regulation of cardiac muscle cell membrane potential +GO:0086042,cardiac muscle cell-cardiac muscle cell adhesion +GO:0086043,bundle of His cell action potential +GO:0086046,membrane depolarization during SA node cell action potential +GO:0086047,membrane depolarization during Purkinje myocyte cell action potential +GO:0086064,cell communication by electrical coupling involved in cardiac conduction +GO:0086065,cell communication involved in cardiac conduction +GO:0086066,atrial cardiac muscle cell to AV node cell communication +GO:0086067,AV node cell to bundle of His cell communication +GO:0086068,Purkinje myocyte to ventricular cardiac muscle cell communication +GO:0086069,bundle of His cell to Purkinje myocyte communication +GO:0086070,SA node cell to atrial cardiac muscle cell communication +GO:0086073,bundle of His cell-Purkinje myocyte adhesion involved in cell communication +GO:0086091,regulation of heart rate by cardiac conduction +GO:0086092,regulation of the force of heart contraction by cardiac conduction +GO:0086097,phospholipase C-activating angiotensin-activated signaling pathway +GO:0086098,angiotensin-activated signaling pathway involved in heart process +GO:0086100,endothelin receptor signaling pathway +GO:0086103,G-protein coupled receptor signaling pathway involved in heart process +GO:0089700,protein kinase D signaling +GO:0089709,L-histidine transmembrane transport +GO:0089711,L-glutamate transmembrane transport +GO:0089712,L-aspartate transmembrane transport +GO:0090002,establishment of protein localization to plasma membrane +GO:0090003,regulation of establishment of protein localization to plasma membrane +GO:0090004,positive regulation of establishment of protein localization to plasma membrane +GO:0090005,negative regulation of establishment of protein localization to plasma membrane +GO:0090009,primitive streak formation +GO:0090022,regulation of neutrophil chemotaxis +GO:0090023,positive regulation of neutrophil chemotaxis +GO:0090024,negative regulation of neutrophil chemotaxis +GO:0090025,regulation of monocyte chemotaxis +GO:0090026,positive regulation of monocyte chemotaxis +GO:0090027,negative regulation of monocyte chemotaxis +GO:0090030,regulation of steroid hormone biosynthetic process +GO:0090031,positive regulation of steroid hormone biosynthetic process +GO:0090032,negative regulation of steroid hormone biosynthetic process +GO:0090034,regulation of chaperone-mediated protein complex assembly +GO:0090035,positive regulation of chaperone-mediated protein complex assembly +GO:0090036,regulation of protein kinase C signaling +GO:0090037,positive regulation of protein kinase C signaling +GO:0090038,negative regulation of protein kinase C signaling +GO:0090042,tubulin deacetylation +GO:0090043,regulation of tubulin deacetylation +GO:0090045,positive regulation of deacetylase activity +GO:0090049,regulation of cell migration involved in sprouting angiogenesis +GO:0090050,positive regulation of cell migration involved in sprouting angiogenesis +GO:0090051,negative regulation of cell migration involved in sprouting angiogenesis +GO:0090063,positive regulation of microtubule nucleation +GO:0090066,regulation of anatomical structure size +GO:0090068,positive regulation of cell cycle process +GO:0090069,regulation of ribosome biogenesis +GO:0090071,negative regulation of ribosome biogenesis +GO:0090073,positive regulation of protein homodimerization activity +GO:0090074,negative regulation of protein homodimerization activity +GO:0090075,relaxation of muscle +GO:0090076,relaxation of skeletal muscle +GO:0090077,foam cell differentiation +GO:0090080,positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway +GO:0090081,regulation of heart induction by regulation of canonical Wnt signaling pathway +GO:0090082,positive regulation of heart induction by negative regulation of canonical Wnt signaling pathway +GO:0090083,regulation of inclusion body assembly +GO:0090084,negative regulation of inclusion body assembly +GO:0090085,regulation of protein deubiquitination +GO:0090086,negative regulation of protein deubiquitination +GO:0090087,regulation of peptide transport +GO:0090088,regulation of oligopeptide transport +GO:0090089,regulation of dipeptide transport +GO:0090090,negative regulation of canonical Wnt signaling pathway +GO:0090091,positive regulation of extracellular matrix disassembly +GO:0090092,regulation of transmembrane receptor protein serine/threonine kinase signaling pathway +GO:0090100,positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway +GO:0090101,negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway +GO:0090102,cochlea development +GO:0090103,cochlea morphogenesis +GO:0090107,regulation of high-density lipoprotein particle assembly +GO:0090109,regulation of cell-substrate junction assembly +GO:0090110,cargo loading into COPII-coated vesicle +GO:0090114,COPII-coated vesicle budding +GO:0090116,C-5 methylation of cytosine +GO:0090118,receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport +GO:0090128,regulation of synapse maturation +GO:0090129,positive regulation of synapse maturation +GO:0090130,tissue migration +GO:0090131,mesenchyme migration +GO:0090132,epithelium migration +GO:0090133,mesendoderm migration +GO:0090134,cell migration involved in mesendoderm migration +GO:0090135,actin filament branching +GO:0090136,epithelial cell-cell adhesion +GO:0090140,regulation of mitochondrial fission +GO:0090141,positive regulation of mitochondrial fission +GO:0090148,membrane fission +GO:0090149,mitochondrial membrane fission +GO:0090150,establishment of protein localization to membrane +GO:0090151,establishment of protein localization to mitochondrial membrane +GO:0090153,regulation of sphingolipid biosynthetic process +GO:0090154,positive regulation of sphingolipid biosynthetic process +GO:0090155,negative regulation of sphingolipid biosynthetic process +GO:0090158,endoplasmic reticulum membrane organization +GO:0090160,Golgi to lysosome transport +GO:0090161,Golgi ribbon formation +GO:0090162,establishment of epithelial cell polarity +GO:0090164,asymmetric Golgi ribbon formation +GO:0090166,Golgi disassembly +GO:0090168,Golgi reassembly +GO:0090169,regulation of spindle assembly +GO:0090170,regulation of Golgi inheritance +GO:0090174,organelle membrane fusion +GO:0090175,regulation of establishment of planar polarity +GO:0090177,establishment of planar polarity involved in neural tube closure +GO:0090178,regulation of establishment of planar polarity involved in neural tube closure +GO:0090179,planar cell polarity pathway involved in neural tube closure +GO:0090181,regulation of cholesterol metabolic process +GO:0090182,regulation of secretion of lysosomal enzymes +GO:0090183,regulation of kidney development +GO:0090184,positive regulation of kidney development +GO:0090185,negative regulation of kidney development +GO:0090186,regulation of pancreatic juice secretion +GO:0090187,positive regulation of pancreatic juice secretion +GO:0090188,negative regulation of pancreatic juice secretion +GO:0090189,regulation of branching involved in ureteric bud morphogenesis +GO:0090190,positive regulation of branching involved in ureteric bud morphogenesis +GO:0090191,negative regulation of branching involved in ureteric bud morphogenesis +GO:0090192,regulation of glomerulus development +GO:0090193,positive regulation of glomerulus development +GO:0090194,negative regulation of glomerulus development +GO:0090195,chemokine secretion +GO:0090196,regulation of chemokine secretion +GO:0090197,positive regulation of chemokine secretion +GO:0090199,regulation of release of cytochrome c from mitochondria +GO:0090200,positive regulation of release of cytochrome c from mitochondria +GO:0090201,negative regulation of release of cytochrome c from mitochondria +GO:0090202,gene looping +GO:0090204,protein localization to nuclear pore +GO:0090205,positive regulation of cholesterol metabolic process +GO:0090206,negative regulation of cholesterol metabolic process +GO:0090207,regulation of triglyceride metabolic process +GO:0090208,positive regulation of triglyceride metabolic process +GO:0090209,negative regulation of triglyceride metabolic process +GO:0090210,regulation of establishment of blood-brain barrier +GO:0090212,negative regulation of establishment of blood-brain barrier +GO:0090218,positive regulation of lipid kinase activity +GO:0090219,negative regulation of lipid kinase activity +GO:0090220,chromosome localization to nuclear envelope involved in homologous chromosome segregation +GO:0090224,regulation of spindle organization +GO:0090230,regulation of centromere complex assembly +GO:0090231,regulation of spindle checkpoint +GO:0090232,positive regulation of spindle checkpoint +GO:0090234,regulation of kinetochore assembly +GO:0090237,regulation of arachidonic acid secretion +GO:0090238,positive regulation of arachidonic acid secretion +GO:0090239,regulation of histone H4 acetylation +GO:0090240,positive regulation of histone H4 acetylation +GO:0090241,negative regulation of histone H4 acetylation +GO:0090244,Wnt signaling pathway involved in somitogenesis +GO:0090245,axis elongation involved in somitogenesis +GO:0090249,regulation of cell motility involved in somitogenic axis elongation +GO:0090257,regulation of muscle system process +GO:0090258,negative regulation of mitochondrial fission +GO:0090259,regulation of retinal ganglion cell axon guidance +GO:0090260,negative regulation of retinal ganglion cell axon guidance +GO:0090261,positive regulation of inclusion body assembly +GO:0090263,positive regulation of canonical Wnt signaling pathway +GO:0090264,regulation of immune complex clearance by monocytes and macrophages +GO:0090265,positive regulation of immune complex clearance by monocytes and macrophages +GO:0090266,regulation of mitotic cell cycle spindle assembly checkpoint +GO:0090267,positive regulation of mitotic cell cycle spindle assembly checkpoint +GO:0090270,regulation of fibroblast growth factor production +GO:0090271,positive regulation of fibroblast growth factor production +GO:0090272,negative regulation of fibroblast growth factor production +GO:0090273,regulation of somatostatin secretion +GO:0090274,positive regulation of somatostatin secretion +GO:0090276,regulation of peptide hormone secretion +GO:0090277,positive regulation of peptide hormone secretion +GO:0090278,negative regulation of peptide hormone secretion +GO:0090279,regulation of calcium ion import +GO:0090280,positive regulation of calcium ion import +GO:0090281,negative regulation of calcium ion import +GO:0090283,regulation of protein glycosylation in Golgi +GO:0090285,negative regulation of protein glycosylation in Golgi +GO:0090286,cytoskeletal anchoring at nuclear membrane +GO:0090287,regulation of cellular response to growth factor stimulus +GO:0090288,negative regulation of cellular response to growth factor stimulus +GO:0090289,regulation of osteoclast proliferation +GO:0090291,negative regulation of osteoclast proliferation +GO:0090292,nuclear matrix anchoring at nuclear membrane +GO:0090296,regulation of mitochondrial DNA replication +GO:0090298,negative regulation of mitochondrial DNA replication +GO:0090303,positive regulation of wound healing +GO:0090305,nucleic acid phosphodiester bond hydrolysis +GO:0090306,spindle assembly involved in meiosis +GO:0090307,mitotic spindle assembly +GO:0090308,regulation of methylation-dependent chromatin silencing +GO:0090310,negative regulation of methylation-dependent chromatin silencing +GO:0090311,regulation of protein deacetylation +GO:0090312,positive regulation of protein deacetylation +GO:0090313,regulation of protein targeting to membrane +GO:0090314,positive regulation of protein targeting to membrane +GO:0090315,negative regulation of protein targeting to membrane +GO:0090316,positive regulation of intracellular protein transport +GO:0090317,negative regulation of intracellular protein transport +GO:0090322,regulation of superoxide metabolic process +GO:0090324,negative regulation of oxidative phosphorylation +GO:0090325,regulation of locomotion involved in locomotory behavior +GO:0090329,regulation of DNA-dependent DNA replication +GO:0090330,regulation of platelet aggregation +GO:0090331,negative regulation of platelet aggregation +GO:0090335,regulation of brown fat cell differentiation +GO:0090336,positive regulation of brown fat cell differentiation +GO:0090342,regulation of cell aging +GO:0090343,positive regulation of cell aging +GO:0090344,negative regulation of cell aging +GO:0090361,regulation of platelet-derived growth factor production +GO:0090362,positive regulation of platelet-derived growth factor production +GO:0090365,regulation of mRNA modification +GO:0090370,negative regulation of cholesterol efflux +GO:0090381,regulation of heart induction +GO:0090382,phagosome maturation +GO:0090383,phagosome acidification +GO:0090385,phagosome-lysosome fusion +GO:0090394,negative regulation of excitatory postsynaptic potential +GO:0090398,cellular senescence +GO:0090399,replicative senescence +GO:0090400,stress-induced premature senescence +GO:0090402,oncogene-induced cell senescence +GO:0090403,oxidative stress-induced premature senescence +GO:0090407,organophosphate biosynthetic process +GO:0090420,naphthalene-containing compound metabolic process +GO:0090427,activation of meiosis +GO:0090435,protein localization to nuclear envelope +GO:0090467,arginine import +GO:0090481,pyrimidine nucleotide-sugar transmembrane transport +GO:0090493,catecholamine uptake +GO:0090494,dopamine uptake +GO:0090500,endocardial cushion to mesenchymal transition +GO:0090501,RNA phosphodiester bond hydrolysis +GO:0090502,"RNA phosphodiester bond hydrolysis, endonucleolytic" +GO:0090503,"RNA phosphodiester bond hydrolysis, exonucleolytic" +GO:0090504,epiboly +GO:0090505,epiboly involved in wound healing +GO:0090520,sphingolipid mediated signaling pathway +GO:0090521,glomerular visceral epithelial cell migration +GO:0090526,regulation of gluconeogenesis involved in cellular glucose homeostasis +GO:0090527,actin filament reorganization +GO:0090529,cell septum assembly +GO:0090557,establishment of endothelial intestinal barrier +GO:0090559,regulation of membrane permeability +GO:0090579,dsDNA loop formation +GO:0090594,inflammatory response to wounding +GO:0090596,sensory organ morphogenesis +GO:0090598,male anatomical structure morphogenesis +GO:0090611,ubiquitin-independent protein catabolic process via the multivesicular body sorting pathway +GO:0090630,activation of GTPase activity +GO:0090646,mitochondrial tRNA processing +GO:0090649,response to oxygen-glucose deprivation +GO:0090650,cellular response to oxygen-glucose deprivation +GO:0090656,t-circle formation +GO:0090659,walking behavior +GO:0090662,ATP hydrolysis coupled transmembrane transport +GO:0090666,scaRNA localization to Cajal body +GO:0090670,RNA localization to Cajal body +GO:0097006,regulation of plasma lipoprotein particle levels +GO:0097009,energy homeostasis +GO:0097011,cellular response to granulocyte macrophage colony-stimulating factor stimulus +GO:0097012,response to granulocyte macrophage colony-stimulating factor +GO:0097021,lymphocyte migration into lymphoid organs +GO:0097028,dendritic cell differentiation +GO:0097029,mature conventional dendritic cell differentiation +GO:0097031,mitochondrial respiratory chain complex I biogenesis +GO:0097033,mitochondrial respiratory chain complex III biogenesis +GO:0097034,mitochondrial respiratory chain complex IV biogenesis +GO:0097035,regulation of membrane lipid distribution +GO:0097039,protein linear polyubiquitination +GO:0097049,motor neuron apoptotic process +GO:0097050,type B pancreatic cell apoptotic process +GO:0097051,establishment of protein localization to endoplasmic reticulum membrane +GO:0097052,L-kynurenine metabolic process +GO:0097053,L-kynurenine catabolic process +GO:0097055,agmatine biosynthetic process +GO:0097056,selenocysteinyl-tRNA(Sec) biosynthetic process +GO:0097061,dendritic spine organization +GO:0097062,dendritic spine maintenance +GO:0097066,response to thyroid hormone +GO:0097067,cellular response to thyroid hormone stimulus +GO:0097070,ductus arteriosus closure +GO:0097084,vascular smooth muscle cell development +GO:0097089,methyl-branched fatty acid metabolic process +GO:0097090,presynaptic membrane organization +GO:0097091,synaptic vesicle clustering +GO:0097094,craniofacial suture morphogenesis +GO:0097101,blood vessel endothelial cell fate specification +GO:0097102,endothelial tip cell fate specification +GO:0097104,postsynaptic membrane assembly +GO:0097105,presynaptic membrane assembly +GO:0097106,postsynaptic density organization +GO:0097107,postsynaptic density assembly +GO:0097111,endoplasmic reticulum-Golgi intermediate compartment organization +GO:0097112,gamma-aminobutyric acid receptor clustering +GO:0097113,AMPA glutamate receptor clustering +GO:0097114,NMDA glutamate receptor clustering +GO:0097116,gephyrin clustering involved in postsynaptic density assembly +GO:0097117,guanylate kinase-associated protein clustering +GO:0097118,neuroligin clustering involved in postsynaptic membrane assembly +GO:0097119,postsynaptic density protein 95 clustering +GO:0097120,receptor localization to synapse +GO:0097150,neuronal stem cell population maintenance +GO:0097151,positive regulation of inhibitory postsynaptic potential +GO:0097154,GABAergic neuron differentiation +GO:0097155,fasciculation of sensory neuron axon +GO:0097156,fasciculation of motor neuron axon +GO:0097164,ammonium ion metabolic process +GO:0097167,circadian regulation of translation +GO:0097178,ruffle assembly +GO:0097186,amelogenesis +GO:0097187,dentinogenesis +GO:0097190,apoptotic signaling pathway +GO:0097191,extrinsic apoptotic signaling pathway +GO:0097192,extrinsic apoptotic signaling pathway in absence of ligand +GO:0097193,intrinsic apoptotic signaling pathway +GO:0097194,execution phase of apoptosis +GO:0097195,pilomotor reflex +GO:0097201,negative regulation of transcription from RNA polymerase II promoter in response to stress +GO:0097202,activation of cysteine-type endopeptidase activity +GO:0097205,renal filtration +GO:0097210,response to gonadotropin-releasing hormone +GO:0097211,cellular response to gonadotropin-releasing hormone +GO:0097212,lysosomal membrane organization +GO:0097237,cellular response to toxic substance +GO:0097240,chromosome attachment to the nuclear envelope +GO:0097241,hematopoietic stem cell migration to bone marrow +GO:0097252,oligodendrocyte apoptotic process +GO:0097264,self proteolysis +GO:0097267,omega-hydroxylase P450 pathway +GO:0097272,ammonia homeostasis +GO:0097274,urea homeostasis +GO:0097284,hepatocyte apoptotic process +GO:0097285,cell-type specific apoptotic process +GO:0097286,iron ion import +GO:0097296,activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway +GO:0097300,programmed necrotic cell death +GO:0097305,response to alcohol +GO:0097306,cellular response to alcohol +GO:0097320,membrane tubulation +GO:0097324,melanocyte migration +GO:0097325,melanocyte proliferation +GO:0097332,response to antipsychotic drug +GO:0097338,response to clozapine +GO:0097340,inhibition of cysteine-type endopeptidase activity +GO:0097341,zymogen inhibition +GO:0097343,ripoptosome assembly +GO:0097345,mitochondrial outer membrane permeabilization +GO:0097350,neutrophil clearance +GO:0097352,autophagosome maturation +GO:0097354,prenylation +GO:0097359,UDP-glucosylation +GO:0097368,establishment of Sertoli cell barrier +GO:0097369,sodium ion import +GO:0097374,sensory neuron axon guidance +GO:0097384,cellular lipid biosynthetic process +GO:0097401,synaptic vesicle lumen acidification +GO:0097411,hypoxia-inducible factor-1alpha signaling pathway +GO:0097421,liver regeneration +GO:0097428,protein maturation by iron-sulfur cluster transfer +GO:0097435,fibril organization +GO:0097459,iron ion import into cell +GO:0097460,ferrous iron import into cell +GO:0097461,ferric iron import into cell +GO:0097466,glycoprotein ERAD pathway +GO:0097468,programmed cell death in response to reactive oxygen species +GO:0097475,motor neuron migration +GO:0097476,spinal cord motor neuron migration +GO:0097477,lateral motor column neuron migration +GO:0097479,synaptic vesicle localization +GO:0097480,establishment of synaptic vesicle localization +GO:0097484,dendrite extension +GO:0097485,neuron projection guidance +GO:0097490,sympathetic neuron projection extension +GO:0097491,sympathetic neuron projection guidance +GO:0097494,regulation of vesicle size +GO:0097498,endothelial tube lumen extension +GO:0097499,protein localization to nonmotile primary cilium +GO:0097500,receptor localization to nonmotile primary cilium +GO:0097501,stress response to metal ion +GO:0097502,mannosylation +GO:0097503,sialylation +GO:0097527,necroptotic signaling pathway +GO:0097529,myeloid leukocyte migration +GO:0097530,granulocyte migration +GO:0097531,mast cell migration +GO:0097553,calcium ion transmembrane import into cytosol +GO:0097576,vacuole fusion +GO:0097577,sequestering of iron ion +GO:0097581,lamellipodium organization +GO:0097588,archaeal or bacterial-type flagellum-dependent cell motility +GO:0097623,potassium ion export across plasma membrane +GO:0097676,histone H3-K36 dimethylation +GO:0097680,double-strand break repair via classical nonhomologous end joining +GO:0097681,double-strand break repair via alternative nonhomologous end joining +GO:0097688,glutamate receptor clustering +GO:0097694,establishment of RNA localization to telomere +GO:0097695,establishment of macromolecular complex localization to telomere +GO:0097696,STAT cascade +GO:0098501,polynucleotide dephosphorylation +GO:0098506,polynucleotide 3' dephosphorylation +GO:0098507,polynucleotide 5' dephosphorylation +GO:0098532,histone H3-K27 trimethylation +GO:0098534,centriole assembly +GO:0098535,de novo centriole assembly +GO:0098542,defense response to other organism +GO:0098543,detection of other organism +GO:0098581,detection of external biotic stimulus +GO:0098586,cellular response to virus +GO:0098596,imitative learning +GO:0098597,observational learning +GO:0098598,learned vocalization behavior or vocal learning +GO:0098602,single organism cell adhesion +GO:0098609,cell-cell adhesion +GO:0098655,cation transmembrane transport +GO:0098656,anion transmembrane transport +GO:0098657,import into cell +GO:0098659,inorganic cation import into cell +GO:0098660,inorganic ion transmembrane transport +GO:0098661,inorganic anion transmembrane transport +GO:0098662,inorganic cation transmembrane transport +GO:0098700,neurotransmitter loading into synaptic vesicle +GO:0098703,calcium ion import across plasma membrane +GO:0098722,asymmetric stem cell division +GO:0098727,maintenance of cell number +GO:0098728,germline stem cell asymmetric division +GO:0098732,macromolecule deacylation +GO:0098734,macromolecule depalmitoylation +GO:0098735,positive regulation of the force of heart contraction +GO:0098739,import across plasma membrane +GO:0098742,cell-cell adhesion via plasma-membrane adhesion molecules +GO:0098743,cell aggregation +GO:0098751,bone cell development +GO:0098754,detoxification +GO:0098758,response to interleukin-8 +GO:0098759,cellular response to interleukin-8 +GO:0098760,response to interleukin-7 +GO:0098761,cellular response to interleukin-7 +GO:0098771,inorganic ion homeostasis +GO:0098773,skin epidermis development +GO:0098779,mitophagy in response to mitochondrial depolarization +GO:0098780,response to mitochondrial depolarisation +GO:0098781,ncRNA transcription +GO:0098787,mRNA cleavage involved in mRNA processing +GO:0098789,pre-mRNA cleavage required for polyadenylation +GO:0098792,xenophagy +GO:0098795,mRNA cleavage involved in gene silencing +GO:0098801,regulation of renal system process +GO:0098810,neurotransmitter reuptake +GO:0098813,nuclear chromosome segregation +GO:0098814,spontaneous synaptic transmission +GO:0098815,modulation of excitatory postsynaptic potential +GO:0098828,modulation of inhibitory postsynaptic potential +GO:0098840,protein transport along microtubule +GO:0098856,intestinal lipid absorption +GO:0098868,bone growth +GO:0098869,cellular oxidant detoxification +GO:0098870,action potential propagation +GO:0098900,regulation of action potential +GO:0098901,regulation of cardiac muscle cell action potential +GO:0098902,regulation of membrane depolarization during action potential +GO:0098903,regulation of membrane repolarization during action potential +GO:0098904,regulation of AV node cell action potential +GO:0098907,regulation of SA node cell action potential +GO:0098908,regulation of neuronal action potential +GO:0098909,regulation of cardiac muscle cell action potential involved in regulation of contraction +GO:0098910,regulation of atrial cardiac muscle cell action potential +GO:0098911,regulation of ventricular cardiac muscle cell action potential +GO:0099500,vesicle fusion to plasma membrane +GO:0099504,synaptic vesicle cycle +GO:0099514,synaptic vesicle cytoskeletal transport +GO:0099515,actin filament-based transport +GO:0099517,synaptic vesicle transport along microtubule +GO:0099518,vesicle cytoskeletal trafficking +GO:0099531,presynaptic process involved in synaptic transmission +GO:0099536,synaptic signaling +GO:0099537,trans-synaptic signaling +GO:0099565,"chemical synaptic transmission, postsynaptic" +GO:0099587,inorganic ion import into cell +GO:0099601,regulation of neurotransmitter receptor activity +GO:1900003,regulation of serine-type endopeptidase activity +GO:1900004,negative regulation of serine-type endopeptidase activity +GO:1900005,positive regulation of serine-type endopeptidase activity +GO:1900006,positive regulation of dendrite development +GO:1900015,regulation of cytokine production involved in inflammatory response +GO:1900016,negative regulation of cytokine production involved in inflammatory response +GO:1900017,positive regulation of cytokine production involved in inflammatory response +GO:1900019,regulation of protein kinase C activity +GO:1900020,positive regulation of protein kinase C activity +GO:1900024,regulation of substrate adhesion-dependent cell spreading +GO:1900025,negative regulation of substrate adhesion-dependent cell spreading +GO:1900026,positive regulation of substrate adhesion-dependent cell spreading +GO:1900027,regulation of ruffle assembly +GO:1900028,negative regulation of ruffle assembly +GO:1900029,positive regulation of ruffle assembly +GO:1900034,regulation of cellular response to heat +GO:1900037,regulation of cellular response to hypoxia +GO:1900038,negative regulation of cellular response to hypoxia +GO:1900039,positive regulation of cellular response to hypoxia +GO:1900040,regulation of interleukin-2 secretion +GO:1900041,negative regulation of interleukin-2 secretion +GO:1900042,positive regulation of interleukin-2 secretion +GO:1900044,regulation of protein K63-linked ubiquitination +GO:1900045,negative regulation of protein K63-linked ubiquitination +GO:1900046,regulation of hemostasis +GO:1900047,negative regulation of hemostasis +GO:1900048,positive regulation of hemostasis +GO:1900063,regulation of peroxisome organization +GO:1900076,regulation of cellular response to insulin stimulus +GO:1900077,negative regulation of cellular response to insulin stimulus +GO:1900078,positive regulation of cellular response to insulin stimulus +GO:1900084,regulation of peptidyl-tyrosine autophosphorylation +GO:1900086,positive regulation of peptidyl-tyrosine autophosphorylation +GO:1900087,positive regulation of G1/S transition of mitotic cell cycle +GO:1900094,regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry +GO:1900101,regulation of endoplasmic reticulum unfolded protein response +GO:1900102,negative regulation of endoplasmic reticulum unfolded protein response +GO:1900103,positive regulation of endoplasmic reticulum unfolded protein response +GO:1900104,regulation of hyaluranon cable assembly +GO:1900106,positive regulation of hyaluranon cable assembly +GO:1900107,regulation of nodal signaling pathway +GO:1900108,negative regulation of nodal signaling pathway +GO:1900109,regulation of histone H3-K9 dimethylation +GO:1900110,negative regulation of histone H3-K9 dimethylation +GO:1900111,positive regulation of histone H3-K9 dimethylation +GO:1900112,regulation of histone H3-K9 trimethylation +GO:1900113,negative regulation of histone H3-K9 trimethylation +GO:1900115,extracellular regulation of signal transduction +GO:1900116,extracellular negative regulation of signal transduction +GO:1900117,regulation of execution phase of apoptosis +GO:1900118,negative regulation of execution phase of apoptosis +GO:1900119,positive regulation of execution phase of apoptosis +GO:1900120,regulation of receptor binding +GO:1900121,negative regulation of receptor binding +GO:1900122,positive regulation of receptor binding +GO:1900125,regulation of hyaluronan biosynthetic process +GO:1900126,negative regulation of hyaluronan biosynthetic process +GO:1900127,positive regulation of hyaluronan biosynthetic process +GO:1900133,regulation of renin secretion into blood stream +GO:1900135,positive regulation of renin secretion into blood stream +GO:1900138,negative regulation of phospholipase A2 activity +GO:1900145,regulation of nodal signaling pathway involved in determination of left/right asymmetry +GO:1900147,regulation of Schwann cell migration +GO:1900149,positive regulation of Schwann cell migration +GO:1900151,"regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" +GO:1900153,"positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" +GO:1900154,regulation of bone trabecula formation +GO:1900155,negative regulation of bone trabecula formation +GO:1900157,regulation of bone mineralization involved in bone maturation +GO:1900158,negative regulation of bone mineralization involved in bone maturation +GO:1900159,positive regulation of bone mineralization involved in bone maturation +GO:1900164,nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry +GO:1900165,negative regulation of interleukin-6 secretion +GO:1900166,regulation of glial cell-derived neurotrophic factor secretion +GO:1900168,positive regulation of glial cell-derived neurotrophic factor secretion +GO:1900169,regulation of glucocorticoid mediated signaling pathway +GO:1900170,negative regulation of glucocorticoid mediated signaling pathway +GO:1900175,regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry +GO:1900180,regulation of protein localization to nucleus +GO:1900181,negative regulation of protein localization to nucleus +GO:1900182,positive regulation of protein localization to nucleus +GO:1900186,negative regulation of clathrin-mediated endocytosis +GO:1900190,regulation of single-species biofilm formation +GO:1900191,negative regulation of single-species biofilm formation +GO:1900193,regulation of oocyte maturation +GO:1900194,negative regulation of oocyte maturation +GO:1900195,positive regulation of oocyte maturation +GO:1900211,regulation of mesenchymal cell apoptotic process involved in metanephros development +GO:1900212,negative regulation of mesenchymal cell apoptotic process involved in metanephros development +GO:1900214,regulation of apoptotic process involved in metanephric collecting duct development +GO:1900215,negative regulation of apoptotic process involved in metanephric collecting duct development +GO:1900217,regulation of apoptotic process involved in metanephric nephron tubule development +GO:1900218,negative regulation of apoptotic process involved in metanephric nephron tubule development +GO:1900220,semaphorin-plexin signaling pathway involved in bone trabecula morphogenesis +GO:1900221,regulation of beta-amyloid clearance +GO:1900222,negative regulation of beta-amyloid clearance +GO:1900224,positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry +GO:1900225,regulation of NLRP3 inflammasome complex assembly +GO:1900226,negative regulation of NLRP3 inflammasome complex assembly +GO:1900227,positive regulation of NLRP3 inflammasome complex assembly +GO:1900228,regulation of single-species biofilm formation in or on host organism +GO:1900229,negative regulation of single-species biofilm formation in or on host organism +GO:1900238,regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway +GO:1900242,regulation of synaptic vesicle endocytosis +GO:1900244,positive regulation of synaptic vesicle endocytosis +GO:1900245,positive regulation of MDA-5 signaling pathway +GO:1900246,positive regulation of RIG-I signaling pathway +GO:1900247,regulation of cytoplasmic translational elongation +GO:1900248,negative regulation of cytoplasmic translational elongation +GO:1900271,regulation of long-term synaptic potentiation +GO:1900272,negative regulation of long-term synaptic potentiation +GO:1900273,positive regulation of long-term synaptic potentiation +GO:1900274,regulation of phospholipase C activity +GO:1900275,negative regulation of phospholipase C activity +GO:1900363,regulation of mRNA polyadenylation +GO:1900364,negative regulation of mRNA polyadenylation +GO:1900368,regulation of RNA interference +GO:1900369,negative regulation of RNA interference +GO:1900371,regulation of purine nucleotide biosynthetic process +GO:1900372,negative regulation of purine nucleotide biosynthetic process +GO:1900373,positive regulation of purine nucleotide biosynthetic process +GO:1900376,regulation of secondary metabolite biosynthetic process +GO:1900377,negative regulation of secondary metabolite biosynthetic process +GO:1900378,positive regulation of secondary metabolite biosynthetic process +GO:1900390,regulation of iron ion import +GO:1900407,regulation of cellular response to oxidative stress +GO:1900408,negative regulation of cellular response to oxidative stress +GO:1900409,positive regulation of cellular response to oxidative stress +GO:1900424,regulation of defense response to bacterium +GO:1900425,negative regulation of defense response to bacterium +GO:1900426,positive regulation of defense response to bacterium +GO:1900449,regulation of glutamate receptor signaling pathway +GO:1900451,positive regulation of glutamate receptor signaling pathway +GO:1900452,regulation of long term synaptic depression +GO:1900454,positive regulation of long term synaptic depression +GO:1900542,regulation of purine nucleotide metabolic process +GO:1900543,negative regulation of purine nucleotide metabolic process +GO:1900544,positive regulation of purine nucleotide metabolic process +GO:1900619,acetate ester metabolic process +GO:1900620,acetate ester biosynthetic process +GO:1900623,regulation of monocyte aggregation +GO:1900625,positive regulation of monocyte aggregation +GO:1900673,olefin metabolic process +GO:1900736,regulation of phospholipase C-activating G-protein coupled receptor signaling pathway +GO:1900738,positive regulation of phospholipase C-activating G-protein coupled receptor signaling pathway +GO:1900739,regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway +GO:1900740,positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway +GO:1900744,regulation of p38MAPK cascade +GO:1900745,positive regulation of p38MAPK cascade +GO:1900746,regulation of vascular endothelial growth factor signaling pathway +GO:1900747,negative regulation of vascular endothelial growth factor signaling pathway +GO:1900748,positive regulation of vascular endothelial growth factor signaling pathway +GO:1900825,regulation of membrane depolarization during cardiac muscle cell action potential +GO:1900864,mitochondrial RNA modification +GO:1900920,regulation of L-glutamate import +GO:1901003,negative regulation of fermentation +GO:1901016,regulation of potassium ion transmembrane transporter activity +GO:1901017,negative regulation of potassium ion transmembrane transporter activity +GO:1901018,positive regulation of potassium ion transmembrane transporter activity +GO:1901019,regulation of calcium ion transmembrane transporter activity +GO:1901020,negative regulation of calcium ion transmembrane transporter activity +GO:1901021,positive regulation of calcium ion transmembrane transporter activity +GO:1901026,ripoptosome assembly involved in necroptotic process +GO:1901028,regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway +GO:1901029,negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway +GO:1901030,positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway +GO:1901031,regulation of response to reactive oxygen species +GO:1901032,negative regulation of response to reactive oxygen species +GO:1901033,positive regulation of response to reactive oxygen species +GO:1901068,guanosine-containing compound metabolic process +GO:1901069,guanosine-containing compound catabolic process +GO:1901070,guanosine-containing compound biosynthetic process +GO:1901071,glucosamine-containing compound metabolic process +GO:1901072,glucosamine-containing compound catabolic process +GO:1901073,glucosamine-containing compound biosynthetic process +GO:1901074,regulation of engulfment of apoptotic cell +GO:1901077,regulation of relaxation of muscle +GO:1901078,negative regulation of relaxation of muscle +GO:1901079,positive regulation of relaxation of muscle +GO:1901090,regulation of protein tetramerization +GO:1901091,negative regulation of protein tetramerization +GO:1901093,regulation of protein homotetramerization +GO:1901094,negative regulation of protein homotetramerization +GO:1901096,regulation of autophagosome maturation +GO:1901097,negative regulation of autophagosome maturation +GO:1901098,positive regulation of autophagosome maturation +GO:1901099,negative regulation of signal transduction in absence of ligand +GO:1901136,carbohydrate derivative catabolic process +GO:1901137,carbohydrate derivative biosynthetic process +GO:1901142,insulin metabolic process +GO:1901159,xylulose 5-phosphate biosynthetic process +GO:1901160,primary amino compound metabolic process +GO:1901162,primary amino compound biosynthetic process +GO:1901163,regulation of trophoblast cell migration +GO:1901164,negative regulation of trophoblast cell migration +GO:1901165,positive regulation of trophoblast cell migration +GO:1901166,neural crest cell migration involved in autonomic nervous system development +GO:1901184,regulation of ERBB signaling pathway +GO:1901185,negative regulation of ERBB signaling pathway +GO:1901186,positive regulation of ERBB signaling pathway +GO:1901201,regulation of extracellular matrix assembly +GO:1901203,positive regulation of extracellular matrix assembly +GO:1901204,regulation of adrenergic receptor signaling pathway involved in heart process +GO:1901205,negative regulation of adrenergic receptor signaling pathway involved in heart process +GO:1901207,regulation of heart looping +GO:1901213,regulation of transcription from RNA polymerase II promoter involved in heart development +GO:1901214,regulation of neuron death +GO:1901215,negative regulation of neuron death +GO:1901216,positive regulation of neuron death +GO:1901222,regulation of NIK/NF-kappaB signaling +GO:1901223,negative regulation of NIK/NF-kappaB signaling +GO:1901224,positive regulation of NIK/NF-kappaB signaling +GO:1901228,positive regulation of transcription from RNA polymerase II promoter involved in heart development +GO:1901246,regulation of lung ciliated cell differentiation +GO:1901252,regulation of intracellular transport of viral material +GO:1901253,negative regulation of intracellular transport of viral material +GO:1901256,regulation of macrophage colony-stimulating factor production +GO:1901258,positive regulation of macrophage colony-stimulating factor production +GO:1901264,carbohydrate derivative transport +GO:1901292,nucleoside phosphate catabolic process +GO:1901293,nucleoside phosphate biosynthetic process +GO:1901295,regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment +GO:1901298,regulation of hydrogen peroxide-mediated programmed cell death +GO:1901299,negative regulation of hydrogen peroxide-mediated programmed cell death +GO:1901300,positive regulation of hydrogen peroxide-mediated programmed cell death +GO:1901301,regulation of cargo loading into COPII-coated vesicle +GO:1901303,negative regulation of cargo loading into COPII-coated vesicle +GO:1901314,regulation of histone H2A K63-linked ubiquitination +GO:1901315,negative regulation of histone H2A K63-linked ubiquitination +GO:1901317,regulation of sperm motility +GO:1901318,negative regulation of sperm motility +GO:1901321,positive regulation of heart induction +GO:1901337,thioester transport +GO:1901339,regulation of store-operated calcium channel activity +GO:1901341,positive regulation of store-operated calcium channel activity +GO:1901342,regulation of vasculature development +GO:1901343,negative regulation of vasculature development +GO:1901355,response to rapamycin +GO:1901361,organic cyclic compound catabolic process +GO:1901374,acetate ester transport +GO:1901379,regulation of potassium ion transmembrane transport +GO:1901380,negative regulation of potassium ion transmembrane transport +GO:1901381,positive regulation of potassium ion transmembrane transport +GO:1901382,regulation of chorionic trophoblast cell proliferation +GO:1901383,negative regulation of chorionic trophoblast cell proliferation +GO:1901385,regulation of voltage-gated calcium channel activity +GO:1901386,negative regulation of voltage-gated calcium channel activity +GO:1901387,positive regulation of voltage-gated calcium channel activity +GO:1901407,regulation of phosphorylation of RNA polymerase II C-terminal domain +GO:1901409,positive regulation of phosphorylation of RNA polymerase II C-terminal domain +GO:1901419,regulation of response to alcohol +GO:1901420,negative regulation of response to alcohol +GO:1901421,positive regulation of response to alcohol +GO:1901475,pyruvate transmembrane transport +GO:1901490,regulation of lymphangiogenesis +GO:1901491,negative regulation of lymphangiogenesis +GO:1901492,positive regulation of lymphangiogenesis +GO:1901503,ether biosynthetic process +GO:1901509,regulation of endothelial tube morphogenesis +GO:1901522,positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus +GO:1901523,icosanoid catabolic process +GO:1901524,regulation of macromitophagy +GO:1901525,negative regulation of macromitophagy +GO:1901529,positive regulation of anion channel activity +GO:1901532,regulation of hematopoietic progenitor cell differentiation +GO:1901533,negative regulation of hematopoietic progenitor cell differentiation +GO:1901534,positive regulation of hematopoietic progenitor cell differentiation +GO:1901535,regulation of DNA demethylation +GO:1901536,negative regulation of DNA demethylation +GO:1901538,changes to DNA methylation involved in embryo development +GO:1901550,regulation of endothelial cell development +GO:1901552,positive regulation of endothelial cell development +GO:1901558,response to metformin +GO:1901563,response to camptothecin +GO:1901565,organonitrogen compound catabolic process +GO:1901568,fatty acid derivative metabolic process +GO:1901569,fatty acid derivative catabolic process +GO:1901570,fatty acid derivative biosynthetic process +GO:1901571,fatty acid derivative transport +GO:1901585,regulation of acid-sensing ion channel activity +GO:1901605,alpha-amino acid metabolic process +GO:1901606,alpha-amino acid catabolic process +GO:1901607,alpha-amino acid biosynthetic process +GO:1901615,organic hydroxy compound metabolic process +GO:1901616,organic hydroxy compound catabolic process +GO:1901617,organic hydroxy compound biosynthetic process +GO:1901620,regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning +GO:1901621,negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning +GO:1901623,regulation of lymphocyte chemotaxis +GO:1901624,negative regulation of lymphocyte chemotaxis +GO:1901626,regulation of postsynaptic membrane organization +GO:1901628,positive regulation of postsynaptic membrane organization +GO:1901629,regulation of presynaptic membrane organization +GO:1901630,negative regulation of presynaptic membrane organization +GO:1901631,positive regulation of presynaptic membrane organization +GO:1901642,nucleoside transmembrane transport +GO:1901652,response to peptide +GO:1901653,cellular response to peptide +GO:1901654,response to ketone +GO:1901655,cellular response to ketone +GO:1901657,glycosyl compound metabolic process +GO:1901658,glycosyl compound catabolic process +GO:1901659,glycosyl compound biosynthetic process +GO:1901660,calcium ion export +GO:1901661,quinone metabolic process +GO:1901662,quinone catabolic process +GO:1901663,quinone biosynthetic process +GO:1901668,regulation of superoxide dismutase activity +GO:1901671,positive regulation of superoxide dismutase activity +GO:1901673,regulation of mitotic spindle assembly +GO:1901674,regulation of histone H3-K27 acetylation +GO:1901678,iron coordination entity transport +GO:1901679,nucleotide transmembrane transport +GO:1901685,glutathione derivative metabolic process +GO:1901687,glutathione derivative biosynthetic process +GO:1901699,cellular response to nitrogen compound +GO:1901701,cellular response to oxygen-containing compound +GO:1901722,regulation of cell proliferation involved in kidney development +GO:1901723,negative regulation of cell proliferation involved in kidney development +GO:1901724,positive regulation of cell proliferation involved in kidney development +GO:1901725,regulation of histone deacetylase activity +GO:1901727,positive regulation of histone deacetylase activity +GO:1901739,regulation of myoblast fusion +GO:1901740,negative regulation of myoblast fusion +GO:1901741,positive regulation of myoblast fusion +GO:1901796,regulation of signal transduction by p53 class mediator +GO:1901797,negative regulation of signal transduction by p53 class mediator +GO:1901798,positive regulation of signal transduction by p53 class mediator +GO:1901799,negative regulation of proteasomal protein catabolic process +GO:1901800,positive regulation of proteasomal protein catabolic process +GO:1901836,regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter +GO:1901837,negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter +GO:1901838,positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter +GO:1901841,regulation of high voltage-gated calcium channel activity +GO:1901844,regulation of cell communication by electrical coupling involved in cardiac conduction +GO:1901856,negative regulation of cellular respiration +GO:1901857,positive regulation of cellular respiration +GO:1901858,regulation of mitochondrial DNA metabolic process +GO:1901859,negative regulation of mitochondrial DNA metabolic process +GO:1901860,positive regulation of mitochondrial DNA metabolic process +GO:1901861,regulation of muscle tissue development +GO:1901862,negative regulation of muscle tissue development +GO:1901863,positive regulation of muscle tissue development +GO:1901873,regulation of post-translational protein modification +GO:1901874,negative regulation of post-translational protein modification +GO:1901876,regulation of calcium ion binding +GO:1901877,negative regulation of calcium ion binding +GO:1901879,regulation of protein depolymerization +GO:1901880,negative regulation of protein depolymerization +GO:1901881,positive regulation of protein depolymerization +GO:1901888,regulation of cell junction assembly +GO:1901889,negative regulation of cell junction assembly +GO:1901890,positive regulation of cell junction assembly +GO:1901894,regulation of calcium-transporting ATPase activity +GO:1901895,negative regulation of calcium-transporting ATPase activity +GO:1901896,positive regulation of calcium-transporting ATPase activity +GO:1901897,regulation of relaxation of cardiac muscle +GO:1901898,negative regulation of relaxation of cardiac muscle +GO:1901970,positive regulation of mitotic sister chromatid separation +GO:1901976,regulation of cell cycle checkpoint +GO:1901977,negative regulation of cell cycle checkpoint +GO:1901978,positive regulation of cell cycle checkpoint +GO:1901979,regulation of inward rectifier potassium channel activity +GO:1901983,regulation of protein acetylation +GO:1901984,negative regulation of protein acetylation +GO:1901985,positive regulation of protein acetylation +GO:1901987,regulation of cell cycle phase transition +GO:1901988,negative regulation of cell cycle phase transition +GO:1901989,positive regulation of cell cycle phase transition +GO:1901990,regulation of mitotic cell cycle phase transition +GO:1901991,negative regulation of mitotic cell cycle phase transition +GO:1901992,positive regulation of mitotic cell cycle phase transition +GO:1901993,regulation of meiotic cell cycle phase transition +GO:1901994,negative regulation of meiotic cell cycle phase transition +GO:1901998,toxin transport +GO:1902001,fatty acid transmembrane transport +GO:1902003,regulation of beta-amyloid formation +GO:1902004,positive regulation of beta-amyloid formation +GO:1902017,regulation of cilium assembly +GO:1902018,negative regulation of cilium assembly +GO:1902019,regulation of cilium-dependent cell motility +GO:1902022,L-lysine transport +GO:1902023,L-arginine transport +GO:1902024,L-histidine transport +GO:1902031,regulation of NADP metabolic process +GO:1902033,regulation of hematopoietic stem cell proliferation +GO:1902035,positive regulation of hematopoietic stem cell proliferation +GO:1902036,regulation of hematopoietic stem cell differentiation +GO:1902037,negative regulation of hematopoietic stem cell differentiation +GO:1902041,regulation of extrinsic apoptotic signaling pathway via death domain receptors +GO:1902042,negative regulation of extrinsic apoptotic signaling pathway via death domain receptors +GO:1902043,positive regulation of extrinsic apoptotic signaling pathway via death domain receptors +GO:1902044,regulation of Fas signaling pathway +GO:1902065,response to L-glutamate +GO:1902071,regulation of hypoxia-inducible factor-1alpha signaling pathway +GO:1902074,response to salt +GO:1902075,cellular response to salt +GO:1902080,regulation of calcium ion import into sarcoplasmic reticulum +GO:1902081,negative regulation of calcium ion import into sarcoplasmic reticulum +GO:1902083,negative regulation of peptidyl-cysteine S-nitrosylation +GO:1902093,positive regulation of sperm motility +GO:1902099,regulation of metaphase/anaphase transition of cell cycle +GO:1902100,negative regulation of metaphase/anaphase transition of cell cycle +GO:1902101,positive regulation of metaphase/anaphase transition of cell cycle +GO:1902105,regulation of leukocyte differentiation +GO:1902106,negative regulation of leukocyte differentiation +GO:1902107,positive regulation of leukocyte differentiation +GO:1902108,regulation of mitochondrial membrane permeability involved in apoptotic process +GO:1902109,negative regulation of mitochondrial membrane permeability involved in apoptotic process +GO:1902110,positive regulation of mitochondrial membrane permeability involved in apoptotic process +GO:1902115,regulation of organelle assembly +GO:1902116,negative regulation of organelle assembly +GO:1902117,positive regulation of organelle assembly +GO:1902159,regulation of cyclic nucleotide-gated ion channel activity +GO:1902165,regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator +GO:1902166,negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator +GO:1902170,cellular response to reactive nitrogen species +GO:1902172,regulation of keratinocyte apoptotic process +GO:1902174,positive regulation of keratinocyte apoptotic process +GO:1902175,regulation of oxidative stress-induced intrinsic apoptotic signaling pathway +GO:1902176,negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway +GO:1902177,positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway +GO:1902186,regulation of viral release from host cell +GO:1902187,negative regulation of viral release from host cell +GO:1902188,positive regulation of viral release from host cell +GO:1902202,regulation of hepatocyte growth factor receptor signaling pathway +GO:1902211,regulation of prolactin signaling pathway +GO:1902218,regulation of intrinsic apoptotic signaling pathway in response to osmotic stress +GO:1902219,negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress +GO:1902221,erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process +GO:1902222,erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process +GO:1902224,ketone body metabolic process +GO:1902226,regulation of macrophage colony-stimulating factor signaling pathway +GO:1902227,negative regulation of macrophage colony-stimulating factor signaling pathway +GO:1902229,regulation of intrinsic apoptotic signaling pathway in response to DNA damage +GO:1902230,negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage +GO:1902231,positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage +GO:1902232,regulation of positive thymic T cell selection +GO:1902235,regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway +GO:1902236,negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway +GO:1902237,positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway +GO:1902253,regulation of intrinsic apoptotic signaling pathway by p53 class mediator +GO:1902254,negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator +GO:1902255,positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator +GO:1902256,regulation of apoptotic process involved in outflow tract morphogenesis +GO:1902257,negative regulation of apoptotic process involved in outflow tract morphogenesis +GO:1902259,regulation of delayed rectifier potassium channel activity +GO:1902260,negative regulation of delayed rectifier potassium channel activity +GO:1902261,positive regulation of delayed rectifier potassium channel activity +GO:1902262,apoptotic process involved in patterning of blood vessels +GO:1902263,apoptotic process involved in embryonic digit morphogenesis +GO:1902267,regulation of polyamine transmembrane transport +GO:1902268,negative regulation of polyamine transmembrane transport +GO:1902269,positive regulation of polyamine transmembrane transport +GO:1902275,regulation of chromatin organization +GO:1902284,neuron projection extension involved in neuron projection guidance +GO:1902285,semaphorin-plexin signaling pathway involved in neuron projection guidance +GO:1902287,semaphorin-plexin signaling pathway involved in axon guidance +GO:1902302,regulation of potassium ion export +GO:1902305,regulation of sodium ion transmembrane transport +GO:1902306,negative regulation of sodium ion transmembrane transport +GO:1902307,positive regulation of sodium ion transmembrane transport +GO:1902308,regulation of peptidyl-serine dephosphorylation +GO:1902309,negative regulation of peptidyl-serine dephosphorylation +GO:1902310,positive regulation of peptidyl-serine dephosphorylation +GO:1902336,positive regulation of retinal ganglion cell axon guidance +GO:1902337,regulation of apoptotic process involved in morphogenesis +GO:1902338,negative regulation of apoptotic process involved in morphogenesis +GO:1902339,positive regulation of apoptotic process involved in morphogenesis +GO:1902358,sulfate transmembrane transport +GO:1902361,mitochondrial pyruvate transmembrane transport +GO:1902366,regulation of Notch signaling pathway involved in somitogenesis +GO:1902367,negative regulation of Notch signaling pathway involved in somitogenesis +GO:1902369,negative regulation of RNA catabolic process +GO:1902373,negative regulation of mRNA catabolic process +GO:1902400,intracellular signal transduction involved in G1 DNA damage checkpoint +GO:1902402,signal transduction involved in mitotic DNA damage checkpoint +GO:1902403,signal transduction involved in mitotic DNA integrity checkpoint +GO:1902410,mitotic cytokinetic process +GO:1902414,protein localization to cell junction +GO:1902415,regulation of mRNA binding +GO:1902430,negative regulation of beta-amyloid formation +GO:1902442,regulation of ripoptosome assembly involved in necroptotic process +GO:1902443,negative regulation of ripoptosome assembly involved in necroptotic process +GO:1902445,regulation of mitochondrial membrane permeability involved in programmed necrotic cell death +GO:1902455,negative regulation of stem cell population maintenance +GO:1902459,positive regulation of stem cell population maintenance +GO:1902460,regulation of mesenchymal stem cell proliferation +GO:1902462,positive regulation of mesenchymal stem cell proliferation +GO:1902463,protein localization to cell leading edge +GO:1902473,regulation of protein localization to synapse +GO:1902474,positive regulation of protein localization to synapse +GO:1902475,L-alpha-amino acid transmembrane transport +GO:1902476,chloride transmembrane transport +GO:1902498,regulation of protein autoubiquitination +GO:1902499,positive regulation of protein autoubiquitination +GO:1902510,regulation of apoptotic DNA fragmentation +GO:1902512,positive regulation of apoptotic DNA fragmentation +GO:1902513,regulation of organelle transport along microtubule +GO:1902514,regulation of generation of L-type calcium current +GO:1902523,positive regulation of protein K63-linked ubiquitination +GO:1902524,positive regulation of protein K48-linked ubiquitination +GO:1902525,regulation of protein monoubiquitination +GO:1902527,positive regulation of protein monoubiquitination +GO:1902528,regulation of protein linear polyubiquitination +GO:1902530,positive regulation of protein linear polyubiquitination +GO:1902532,negative regulation of intracellular signal transduction +GO:1902533,positive regulation of intracellular signal transduction +GO:1902534,single-organism membrane invagination +GO:1902547,regulation of cellular response to vascular endothelial growth factor stimulus +GO:1902548,negative regulation of cellular response to vascular endothelial growth factor stimulus +GO:1902563,regulation of neutrophil activation +GO:1902564,negative regulation of neutrophil activation +GO:1902566,regulation of eosinophil activation +GO:1902567,negative regulation of eosinophil activation +GO:1902568,positive regulation of eosinophil activation +GO:1902569,negative regulation of activation of JAK2 kinase activity +GO:1902570,protein localization to nucleolus +GO:1902571,regulation of serine-type peptidase activity +GO:1902572,negative regulation of serine-type peptidase activity +GO:1902573,positive regulation of serine-type peptidase activity +GO:1902576,negative regulation of nuclear cell cycle DNA replication +GO:1902579,multi-organism localization +GO:1902580,single-organism cellular localization +GO:1902583,multi-organism intracellular transport +GO:1902590,multi-organism organelle organization +GO:1902591,single-organism membrane budding +GO:1902592,multi-organism membrane budding +GO:1902593,single-organism nuclear import +GO:1902594,multi-organism nuclear import +GO:1902598,creatine transmembrane transport +GO:1902600,hydrogen ion transmembrane transport +GO:1902603,carnitine transmembrane transport +GO:1902606,regulation of large conductance calcium-activated potassium channel activity +GO:1902608,positive regulation of large conductance calcium-activated potassium channel activity +GO:1902612,regulation of anti-Mullerian hormone signaling pathway +GO:1902613,negative regulation of anti-Mullerian hormone signaling pathway +GO:1902617,response to fluoride +GO:1902622,regulation of neutrophil migration +GO:1902623,negative regulation of neutrophil migration +GO:1902624,positive regulation of neutrophil migration +GO:1902626,assembly of large subunit precursor of preribosome +GO:1902652,secondary alcohol metabolic process +GO:1902653,secondary alcohol biosynthetic process +GO:1902656,calcium ion import into cytosol +GO:1902659,regulation of glucose mediated signaling pathway +GO:1902661,positive regulation of glucose mediated signaling pathway +GO:1902667,regulation of axon guidance +GO:1902668,negative regulation of axon guidance +GO:1902669,positive regulation of axon guidance +GO:1902683,regulation of receptor localization to synapse +GO:1902686,mitochondrial outer membrane permeabilization involved in programmed cell death +GO:1902688,regulation of NAD metabolic process +GO:1902689,negative regulation of NAD metabolic process +GO:1902692,regulation of neuroblast proliferation +GO:1902713,regulation of interferon-gamma secretion +GO:1902714,negative regulation of interferon-gamma secretion +GO:1902715,positive regulation of interferon-gamma secretion +GO:1902723,negative regulation of skeletal muscle satellite cell proliferation +GO:1902725,negative regulation of satellite cell differentiation +GO:1902730,positive regulation of proteoglycan biosynthetic process +GO:1902731,negative regulation of chondrocyte proliferation +GO:1902732,positive regulation of chondrocyte proliferation +GO:1902742,apoptotic process involved in development +GO:1902743,regulation of lamellipodium organization +GO:1902744,negative regulation of lamellipodium organization +GO:1902745,positive regulation of lamellipodium organization +GO:1902746,regulation of lens fiber cell differentiation +GO:1902749,regulation of cell cycle G2/M phase transition +GO:1902750,negative regulation of cell cycle G2/M phase transition +GO:1902751,positive regulation of cell cycle G2/M phase transition +GO:1902766,skeletal muscle satellite cell migration +GO:1902774,late endosome to lysosome transport +GO:1902775,mitochondrial large ribosomal subunit assembly +GO:1902803,regulation of synaptic vesicle transport +GO:1902804,negative regulation of synaptic vesicle transport +GO:1902805,positive regulation of synaptic vesicle transport +GO:1902806,regulation of cell cycle G1/S phase transition +GO:1902807,negative regulation of cell cycle G1/S phase transition +GO:1902808,positive regulation of cell cycle G1/S phase transition +GO:1902809,regulation of skeletal muscle fiber differentiation +GO:1902822,regulation of late endosome to lysosome transport +GO:1902823,negative regulation of late endosome to lysosome transport +GO:1902824,positive regulation of late endosome to lysosome transport +GO:1902837,amino acid import into cell +GO:1902850,microtubule cytoskeleton organization involved in mitosis +GO:1902855,regulation of nonmotile primary cilium assembly +GO:1902857,positive regulation of nonmotile primary cilium assembly +GO:1902866,regulation of retina development in camera-type eye +GO:1902882,regulation of response to oxidative stress +GO:1902883,negative regulation of response to oxidative stress +GO:1902884,positive regulation of response to oxidative stress +GO:1902893,regulation of pri-miRNA transcription from RNA polymerase II promoter +GO:1902894,negative regulation of pri-miRNA transcription from RNA polymerase II promoter +GO:1902895,positive regulation of pri-miRNA transcription from RNA polymerase II promoter +GO:1902896,terminal web assembly +GO:1902897,regulation of postsynaptic density protein 95 clustering +GO:1902902,negative regulation of autophagosome assembly +GO:1902903,regulation of fibril organization +GO:1902908,regulation of melanosome transport +GO:1902913,positive regulation of neuroepithelial cell differentiation +GO:1902914,regulation of protein polyubiquitination +GO:1902915,negative regulation of protein polyubiquitination +GO:1902916,positive regulation of protein polyubiquitination +GO:1902930,regulation of alcohol biosynthetic process +GO:1902931,negative regulation of alcohol biosynthetic process +GO:1902932,positive regulation of alcohol biosynthetic process +GO:1902941,regulation of voltage-gated chloride channel activity +GO:1902943,positive regulation of voltage-gated chloride channel activity +GO:1902947,regulation of tau-protein kinase activity +GO:1902950,regulation of dendritic spine maintenance +GO:1902952,positive regulation of dendritic spine maintenance +GO:1902953,positive regulation of ER to Golgi vesicle-mediated transport +GO:1902954,regulation of early endosome to recycling endosome transport +GO:1902956,"regulation of mitochondrial electron transport, NADH to ubiquinone" +GO:1902957,"negative regulation of mitochondrial electron transport, NADH to ubiquinone" +GO:1902958,"positive regulation of mitochondrial electron transport, NADH to ubiquinone" +GO:1902959,regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process +GO:1902962,regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process +GO:1902963,negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process +GO:1902965,regulation of protein localization to early endosome +GO:1902966,positive regulation of protein localization to early endosome +GO:1902969,mitotic DNA replication +GO:1902990,mitotic telomere maintenance via semi-conservative replication +GO:1902991,regulation of amyloid precursor protein catabolic process +GO:1902992,negative regulation of amyloid precursor protein catabolic process +GO:1902993,positive regulation of amyloid precursor protein catabolic process +GO:1902994,regulation of phospholipid efflux +GO:1902995,positive regulation of phospholipid efflux +GO:1902996,regulation of neurofibrillary tangle assembly +GO:1902998,positive regulation of neurofibrillary tangle assembly +GO:1903003,positive regulation of protein deubiquitination +GO:1903008,organelle disassembly +GO:1903010,regulation of bone development +GO:1903011,negative regulation of bone development +GO:1903012,positive regulation of bone development +GO:1903015,regulation of exo-alpha-sialidase activity +GO:1903016,negative regulation of exo-alpha-sialidase activity +GO:1903018,regulation of glycoprotein metabolic process +GO:1903019,negative regulation of glycoprotein metabolic process +GO:1903020,positive regulation of glycoprotein metabolic process +GO:1903025,regulation of RNA polymerase II regulatory region sequence-specific DNA binding +GO:1903026,negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding +GO:1903027,regulation of opsonization +GO:1903031,regulation of microtubule plus-end binding +GO:1903033,positive regulation of microtubule plus-end binding +GO:1903034,regulation of response to wounding +GO:1903035,negative regulation of response to wounding +GO:1903036,positive regulation of response to wounding +GO:1903037,regulation of leukocyte cell-cell adhesion +GO:1903038,negative regulation of leukocyte cell-cell adhesion +GO:1903039,positive regulation of leukocyte cell-cell adhesion +GO:1903044,protein localization to membrane raft +GO:1903046,meiotic cell cycle process +GO:1903047,mitotic cell cycle process +GO:1903050,regulation of proteolysis involved in cellular protein catabolic process +GO:1903051,negative regulation of proteolysis involved in cellular protein catabolic process +GO:1903052,positive regulation of proteolysis involved in cellular protein catabolic process +GO:1903053,regulation of extracellular matrix organization +GO:1903054,negative regulation of extracellular matrix organization +GO:1903055,positive regulation of extracellular matrix organization +GO:1903056,regulation of melanosome organization +GO:1903059,regulation of protein lipidation +GO:1903061,positive regulation of protein lipidation +GO:1903069,regulation of ER-associated ubiquitin-dependent protein catabolic process +GO:1903070,negative regulation of ER-associated ubiquitin-dependent protein catabolic process +GO:1903071,positive regulation of ER-associated ubiquitin-dependent protein catabolic process +GO:1903076,regulation of protein localization to plasma membrane +GO:1903077,negative regulation of protein localization to plasma membrane +GO:1903078,positive regulation of protein localization to plasma membrane +GO:1903093,regulation of protein K48-linked deubiquitination +GO:1903094,negative regulation of protein K48-linked deubiquitination +GO:1903115,regulation of actin filament-based movement +GO:1903116,positive regulation of actin filament-based movement +GO:1903121,regulation of TRAIL-activated apoptotic signaling pathway +GO:1903140,regulation of establishment of endothelial barrier +GO:1903142,positive regulation of establishment of endothelial barrier +GO:1903146,regulation of mitophagy +GO:1903147,negative regulation of mitophagy +GO:1903169,regulation of calcium ion transmembrane transport +GO:1903170,negative regulation of calcium ion transmembrane transport +GO:1903173,fatty alcohol metabolic process +GO:1903201,regulation of oxidative stress-induced cell death +GO:1903202,negative regulation of oxidative stress-induced cell death +GO:1903203,regulation of oxidative stress-induced neuron death +GO:1903204,negative regulation of oxidative stress-induced neuron death +GO:1903205,regulation of hydrogen peroxide-induced cell death +GO:1903206,negative regulation of hydrogen peroxide-induced cell death +GO:1903207,regulation of hydrogen peroxide-induced neuron death +GO:1903208,negative regulation of hydrogen peroxide-induced neuron death +GO:1903209,positive regulation of oxidative stress-induced cell death +GO:1903214,regulation of protein targeting to mitochondrion +GO:1903215,negative regulation of protein targeting to mitochondrion +GO:1903216,regulation of protein processing involved in protein targeting to mitochondrion +GO:1903217,negative regulation of protein processing involved in protein targeting to mitochondrion +GO:1903223,positive regulation of oxidative stress-induced neuron death +GO:1903224,regulation of endodermal cell differentiation +GO:1903225,negative regulation of endodermal cell differentiation +GO:1903232,melanosome assembly +GO:1903233,regulation of calcium ion-dependent exocytosis of neurotransmitter +GO:1903236,regulation of leukocyte tethering or rolling +GO:1903237,negative regulation of leukocyte tethering or rolling +GO:1903238,positive regulation of leukocyte tethering or rolling +GO:1903242,regulation of cardiac muscle hypertrophy in response to stress +GO:1903243,negative regulation of cardiac muscle hypertrophy in response to stress +GO:1903244,positive regulation of cardiac muscle hypertrophy in response to stress +GO:1903251,multi-ciliated epithelial cell differentiation +GO:1903261,regulation of serine phosphorylation of STAT3 protein +GO:1903263,positive regulation of serine phosphorylation of STAT3 protein +GO:1903265,positive regulation of tumor necrosis factor-mediated signaling pathway +GO:1903273,regulation of sodium ion export +GO:1903275,positive regulation of sodium ion export +GO:1903276,regulation of sodium ion export from cell +GO:1903278,positive regulation of sodium ion export from cell +GO:1903279,regulation of calcium:sodium antiporter activity +GO:1903281,positive regulation of calcium:sodium antiporter activity +GO:1903286,regulation of potassium ion import +GO:1903288,positive regulation of potassium ion import +GO:1903297,regulation of hypoxia-induced intrinsic apoptotic signaling pathway +GO:1903298,negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway +GO:1903299,regulation of hexokinase activity +GO:1903300,negative regulation of hexokinase activity +GO:1903301,positive regulation of hexokinase activity +GO:1903305,regulation of regulated secretory pathway +GO:1903306,negative regulation of regulated secretory pathway +GO:1903307,positive regulation of regulated secretory pathway +GO:1903308,regulation of chromatin modification +GO:1903309,negative regulation of chromatin modification +GO:1903310,positive regulation of chromatin modification +GO:1903311,regulation of mRNA metabolic process +GO:1903312,negative regulation of mRNA metabolic process +GO:1903313,positive regulation of mRNA metabolic process +GO:1903317,regulation of protein maturation +GO:1903318,negative regulation of protein maturation +GO:1903319,positive regulation of protein maturation +GO:1903320,regulation of protein modification by small protein conjugation or removal +GO:1903321,negative regulation of protein modification by small protein conjugation or removal +GO:1903322,positive regulation of protein modification by small protein conjugation or removal +GO:1903332,regulation of protein folding +GO:1903333,negative regulation of protein folding +GO:1903335,regulation of vacuolar transport +GO:1903336,negative regulation of vacuolar transport +GO:1903337,positive regulation of vacuolar transport +GO:1903347,negative regulation of bicellular tight junction assembly +GO:1903350,response to dopamine +GO:1903351,cellular response to dopamine +GO:1903352,L-ornithine transmembrane transport +GO:1903358,regulation of Golgi organization +GO:1903361,protein localization to basolateral plasma membrane +GO:1903362,regulation of cellular protein catabolic process +GO:1903363,negative regulation of cellular protein catabolic process +GO:1903364,positive regulation of cellular protein catabolic process +GO:1903365,regulation of fear response +GO:1903367,positive regulation of fear response +GO:1903371,regulation of endoplasmic reticulum tubular network organization +GO:1903373,positive regulation of endoplasmic reticulum tubular network organization +GO:1903375,facioacoustic ganglion development +GO:1903376,regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway +GO:1903377,negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway +GO:1903378,positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway +GO:1903381,regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway +GO:1903382,negative regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway +GO:1903383,regulation of hydrogen peroxide-induced neuron intrinsic apoptotic signaling pathway +GO:1903384,negative regulation of hydrogen peroxide-induced neuron intrinsic apoptotic signaling pathway +GO:1903391,regulation of adherens junction organization +GO:1903392,negative regulation of adherens junction organization +GO:1903393,positive regulation of adherens junction organization +GO:1903401,L-lysine transmembrane transport +GO:1903409,reactive oxygen species biosynthetic process +GO:1903412,response to bile acid +GO:1903413,cellular response to bile acid +GO:1903416,response to glycoside +GO:1903421,regulation of synaptic vesicle recycling +GO:1903423,positive regulation of synaptic vesicle recycling +GO:1903426,regulation of reactive oxygen species biosynthetic process +GO:1903427,negative regulation of reactive oxygen species biosynthetic process +GO:1903428,positive regulation of reactive oxygen species biosynthetic process +GO:1903429,regulation of cell maturation +GO:1903430,negative regulation of cell maturation +GO:1903431,positive regulation of cell maturation +GO:1903432,regulation of TORC1 signaling +GO:1903433,regulation of constitutive secretory pathway +GO:1903441,protein localization to ciliary membrane +GO:1903445,protein transport from ciliary membrane to plasma membrane +GO:1903487,regulation of lactation +GO:1903504,regulation of mitotic spindle checkpoint +GO:1903509,liposaccharide metabolic process +GO:1903510,mucopolysaccharide metabolic process +GO:1903513,endoplasmic reticulum to cytosol transport +GO:1903514,calcium ion transport from endoplasmic reticulum to cytosol +GO:1903516,regulation of single strand break repair +GO:1903519,regulation of mammary gland involution +GO:1903521,positive regulation of mammary gland involution +GO:1903522,regulation of blood circulation +GO:1903523,negative regulation of blood circulation +GO:1903524,positive regulation of blood circulation +GO:1903525,regulation of membrane tubulation +GO:1903526,negative regulation of membrane tubulation +GO:1903527,positive regulation of membrane tubulation +GO:1903530,regulation of secretion by cell +GO:1903531,negative regulation of secretion by cell +GO:1903532,positive regulation of secretion by cell +GO:1903533,regulation of protein targeting +GO:1903541,regulation of exosomal secretion +GO:1903543,positive regulation of exosomal secretion +GO:1903546,protein localization to photoreceptor outer segment +GO:1903551,regulation of extracellular exosome assembly +GO:1903553,positive regulation of extracellular exosome assembly +GO:1903555,regulation of tumor necrosis factor superfamily cytokine production +GO:1903556,negative regulation of tumor necrosis factor superfamily cytokine production +GO:1903557,positive regulation of tumor necrosis factor superfamily cytokine production +GO:1903573,negative regulation of response to endoplasmic reticulum stress +GO:1903575,cornified envelope assembly +GO:1903578,regulation of ATP metabolic process +GO:1903579,negative regulation of ATP metabolic process +GO:1903580,positive regulation of ATP metabolic process +GO:1903587,regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis +GO:1903588,negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis +GO:1903593,regulation of histamine secretion by mast cell +GO:1903595,positive regulation of histamine secretion by mast cell +GO:1903596,regulation of gap junction assembly +GO:1903598,positive regulation of gap junction assembly +GO:1903599,positive regulation of mitophagy +GO:1903608,protein localization to cytoplasmic stress granule +GO:1903624,regulation of DNA catabolic process +GO:1903625,negative regulation of DNA catabolic process +GO:1903626,positive regulation of DNA catabolic process +GO:1903639,regulation of gastrin-induced gastric acid secretion +GO:1903640,negative regulation of gastrin-induced gastric acid secretion +GO:1903649,regulation of cytoplasmic transport +GO:1903650,negative regulation of cytoplasmic transport +GO:1903651,positive regulation of cytoplasmic transport +GO:1903659,regulation of complement-dependent cytotoxicity +GO:1903660,negative regulation of complement-dependent cytotoxicity +GO:1903670,regulation of sprouting angiogenesis +GO:1903671,negative regulation of sprouting angiogenesis +GO:1903672,positive regulation of sprouting angiogenesis +GO:1903677,regulation of cap-independent translational initiation +GO:1903679,positive regulation of cap-independent translational initiation +GO:1903689,"regulation of wound healing, spreading of epidermal cells" +GO:1903690,"negative regulation of wound healing, spreading of epidermal cells" +GO:1903706,regulation of hemopoiesis +GO:1903707,negative regulation of hemopoiesis +GO:1903708,positive regulation of hemopoiesis +GO:1903715,regulation of aerobic respiration +GO:1903719,regulation of I-kappaB phosphorylation +GO:1903721,positive regulation of I-kappaB phosphorylation +GO:1903722,regulation of centriole elongation +GO:1903725,regulation of phospholipid metabolic process +GO:1903726,negative regulation of phospholipid metabolic process +GO:1903727,positive regulation of phospholipid metabolic process +GO:1903729,regulation of plasma membrane organization +GO:1903747,regulation of establishment of protein localization to mitochondrion +GO:1903748,negative regulation of establishment of protein localization to mitochondrion +GO:1903749,positive regulation of establishment of protein localization to mitochondrion +GO:1903750,regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide +GO:1903751,negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide +GO:1903753,negative regulation of p38MAPK cascade +GO:1903760,regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization +GO:1903762,positive regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization +GO:1903772,regulation of viral budding via host ESCRT complex +GO:1903774,positive regulation of viral budding via host ESCRT complex +GO:1903779,regulation of cardiac conduction +GO:1903792,negative regulation of anion transport +GO:1903793,positive regulation of anion transport +GO:1903795,regulation of inorganic anion transmembrane transport +GO:1903796,negative regulation of inorganic anion transmembrane transport +GO:1903797,positive regulation of inorganic anion transmembrane transport +GO:1903798,regulation of production of miRNAs involved in gene silencing by miRNA +GO:1903799,negative regulation of production of miRNAs involved in gene silencing by miRNA +GO:1903802,L-glutamate(1-) import into cell +GO:1903817,negative regulation of voltage-gated potassium channel activity +GO:1903818,positive regulation of voltage-gated potassium channel activity +GO:1903825,organic acid transmembrane transport +GO:1903826,arginine transmembrane transport +GO:1903827,regulation of cellular protein localization +GO:1903828,negative regulation of cellular protein localization +GO:1903829,positive regulation of cellular protein localization +GO:1903830,magnesium ion transmembrane transport +GO:1903844,regulation of cellular response to transforming growth factor beta stimulus +GO:1903845,negative regulation of cellular response to transforming growth factor beta stimulus +GO:1903846,positive regulation of cellular response to transforming growth factor beta stimulus +GO:1903859,regulation of dendrite extension +GO:1903861,positive regulation of dendrite extension +GO:1903862,positive regulation of oxidative phosphorylation +GO:1903867,extraembryonic membrane development +GO:1903874,ferrous iron transmembrane transport +GO:1903887,motile primary cilium assembly +GO:1903891,regulation of ATF6-mediated unfolded protein response +GO:1903894,regulation of IRE1-mediated unfolded protein response +GO:1903895,negative regulation of IRE1-mediated unfolded protein response +GO:1903896,positive regulation of IRE1-mediated unfolded protein response +GO:1903897,regulation of PERK-mediated unfolded protein response +GO:1903898,negative regulation of PERK-mediated unfolded protein response +GO:1903899,positive regulation of PERK-mediated unfolded protein response +GO:1903900,regulation of viral life cycle +GO:1903901,negative regulation of viral life cycle +GO:1903902,positive regulation of viral life cycle +GO:1903903,regulation of establishment of T cell polarity +GO:1903909,regulation of receptor clustering +GO:1903911,positive regulation of receptor clustering +GO:1903912,negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation +GO:1903918,regulation of actin filament severing +GO:1903919,negative regulation of actin filament severing +GO:1903921,regulation of protein processing in phagocytic vesicle +GO:1903923,positive regulation of protein processing in phagocytic vesicle +GO:1903925,response to bisphenol A +GO:1903935,response to sodium arsenite +GO:1903937,response to acrylamide +GO:1903947,positive regulation of ventricular cardiac muscle cell action potential +GO:1903955,positive regulation of protein targeting to mitochondrion +GO:1903959,regulation of anion transmembrane transport +GO:1903960,negative regulation of anion transmembrane transport +GO:1903961,positive regulation of anion transmembrane transport +GO:1903963,arachidonate transport +GO:1903969,regulation of response to macrophage colony-stimulating factor +GO:1903970,negative regulation of response to macrophage colony-stimulating factor +GO:1903972,regulation of cellular response to macrophage colony-stimulating factor stimulus +GO:1903973,negative regulation of cellular response to macrophage colony-stimulating factor stimulus +GO:1903975,regulation of glial cell migration +GO:1903976,negative regulation of glial cell migration +GO:1903977,positive regulation of glial cell migration +GO:1903989,regulation of ferrous iron import into cell +GO:1903991,positive regulation of ferrous iron import into cell +GO:1904008,response to monosodium glutamate +GO:1904009,cellular response to monosodium glutamate +GO:1904016,response to Thyroglobulin triiodothyronine +GO:1904017,cellular response to Thyroglobulin triiodothyronine +GO:1904018,positive regulation of vasculature development +GO:1904019,epithelial cell apoptotic process +GO:1904023,regulation of glucose catabolic process to lactate via pyruvate +GO:1904024,negative regulation of glucose catabolic process to lactate via pyruvate +GO:1904029,regulation of cyclin-dependent protein kinase activity +GO:1904030,negative regulation of cyclin-dependent protein kinase activity +GO:1904031,positive regulation of cyclin-dependent protein kinase activity +GO:1904035,regulation of epithelial cell apoptotic process +GO:1904036,negative regulation of epithelial cell apoptotic process +GO:1904037,positive regulation of epithelial cell apoptotic process +GO:1904048,regulation of spontaneous neurotransmitter secretion +GO:1904049,negative regulation of spontaneous neurotransmitter secretion +GO:1904058,positive regulation of sensory perception of pain +GO:1904059,regulation of locomotor rhythm +GO:1904062,regulation of cation transmembrane transport +GO:1904063,negative regulation of cation transmembrane transport +GO:1904064,positive regulation of cation transmembrane transport +GO:1904071,presynaptic active zone assembly +GO:1904116,response to vasopressin +GO:1904117,cellular response to vasopressin +GO:1904139,regulation of microglial cell migration +GO:1904152,"regulation of retrograde protein transport, ER to cytosol" +GO:1904153,"negative regulation of retrograde protein transport, ER to cytosol" +GO:1904154,"positive regulation of retrograde protein transport, ER to cytosol" +GO:1904180,negative regulation of membrane depolarization +GO:1904181,positive regulation of membrane depolarization +GO:1904192,regulation of cholangiocyte apoptotic process +GO:1904193,negative regulation of cholangiocyte apoptotic process +GO:1904204,regulation of skeletal muscle hypertrophy +GO:1904211,"membrane protein proteolysis involved in retrograde protein transport, ER to cytosol" +GO:1904217,regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity +GO:1904219,positive regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity +GO:1904220,regulation of serine C-palmitoyltransferase activity +GO:1904222,positive regulation of serine C-palmitoyltransferase activity +GO:1904223,regulation of glucuronosyltransferase activity +GO:1904224,negative regulation of glucuronosyltransferase activity +GO:1904229,regulation of succinate dehydrogenase activity +GO:1904231,positive regulation of succinate dehydrogenase activity +GO:1904232,regulation of aconitate hydratase activity +GO:1904234,positive regulation of aconitate hydratase activity +GO:1904235,"regulation of substrate-dependent cell migration, cell attachment to substrate" +GO:1904237,"positive regulation of substrate-dependent cell migration, cell attachment to substrate" +GO:1904238,pericyte cell differentiation +GO:1904251,regulation of bile acid metabolic process +GO:1904252,negative regulation of bile acid metabolic process +GO:1904259,regulation of basement membrane assembly involved in embryonic body morphogenesis +GO:1904261,positive regulation of basement membrane assembly involved in embryonic body morphogenesis +GO:1904262,negative regulation of TORC1 signaling +GO:1904263,positive regulation of TORC1 signaling +GO:1904292,regulation of ERAD pathway +GO:1904293,negative regulation of ERAD pathway +GO:1904294,positive regulation of ERAD pathway +GO:1904304,regulation of gastro-intestinal system smooth muscle contraction +GO:1904306,positive regulation of gastro-intestinal system smooth muscle contraction +GO:1904321,response to forskolin +GO:1904322,cellular response to forskolin +GO:1904327,protein localization to cytosolic proteasome complex +GO:1904338,regulation of dopaminergic neuron differentiation +GO:1904339,negative regulation of dopaminergic neuron differentiation +GO:1904350,regulation of protein catabolic process in the vacuole +GO:1904352,positive regulation of protein catabolic process in the vacuole +GO:1904353,regulation of telomere capping +GO:1904354,negative regulation of telomere capping +GO:1904355,positive regulation of telomere capping +GO:1904356,regulation of telomere maintenance via telomere lengthening +GO:1904357,negative regulation of telomere maintenance via telomere lengthening +GO:1904358,positive regulation of telomere maintenance via telomere lengthening +GO:1904375,regulation of protein localization to cell periphery +GO:1904376,negative regulation of protein localization to cell periphery +GO:1904377,positive regulation of protein localization to cell periphery +GO:1904378,maintenance of unfolded protein involved in ERAD pathway +GO:1904379,protein localization to cytosolic proteasome complex involved in ERAD pathway +GO:1904380,endoplasmic reticulum mannose trimming +GO:1904381,Golgi apparatus mannose trimming +GO:1904382,mannose trimming involved in glycoprotein ERAD pathway +GO:1904383,response to sodium phosphate +GO:1904393,regulation of skeletal muscle acetylcholine-gated channel clustering +GO:1904395,positive regulation of skeletal muscle acetylcholine-gated channel clustering +GO:1904396,regulation of neuromuscular junction development +GO:1904398,positive regulation of neuromuscular junction development +GO:1904406,negative regulation of nitric oxide metabolic process +GO:1904407,positive regulation of nitric oxide metabolic process +GO:1904415,regulation of xenophagy +GO:1904417,positive regulation of xenophagy +GO:1904424,regulation of GTP binding +GO:1904426,positive regulation of GTP binding +GO:1904427,positive regulation of calcium ion transmembrane transport +GO:1904429,regulation of t-circle formation +GO:1904430,negative regulation of t-circle formation +GO:1904431,positive regulation of t-circle formation +GO:1904432,regulation of ferrous iron binding +GO:1904434,positive regulation of ferrous iron binding +GO:1904435,regulation of transferrin receptor binding +GO:1904437,positive regulation of transferrin receptor binding +GO:1904467,regulation of tumor necrosis factor secretion +GO:1904468,negative regulation of tumor necrosis factor secretion +GO:1904469,positive regulation of tumor necrosis factor secretion +GO:1904478,regulation of intestinal absorption +GO:1904479,negative regulation of intestinal absorption +GO:1904502,regulation of lipophagy +GO:1904504,positive regulation of lipophagy +GO:1904526,regulation of microtubule binding +GO:1904528,positive regulation of microtubule binding +GO:1904562,phosphatidylinositol 5-phosphate metabolic process +GO:1904587,response to glycoprotein +GO:1904589,regulation of protein import +GO:1904590,negative regulation of protein import +GO:1904591,positive regulation of protein import +GO:1904631,response to glucoside +GO:1904636,response to ionomycin +GO:1904637,cellular response to ionomycin +GO:1904659,glucose transmembrane transport +GO:1904666,regulation of ubiquitin protein ligase activity +GO:1904667,negative regulation of ubiquitin protein ligase activity +GO:1904668,positive regulation of ubiquitin protein ligase activity +GO:1904672,regulation of somatic stem cell population maintenance +GO:1904673,negative regulation of somatic stem cell population maintenance +GO:1904683,regulation of metalloendopeptidase activity +GO:1904684,negative regulation of metalloendopeptidase activity +GO:1904688,regulation of cytoplasmic translational initiation +GO:1904690,positive regulation of cytoplasmic translational initiation +GO:1904693,midbrain morphogenesis +GO:1904694,negative regulation of vascular smooth muscle contraction +GO:1904705,regulation of vascular smooth muscle cell proliferation +GO:1904706,negative regulation of vascular smooth muscle cell proliferation +GO:1904714,regulation of chaperone-mediated autophagy +GO:1904715,negative regulation of chaperone-mediated autophagy +GO:1904720,regulation of mRNA endonucleolytic cleavage involved in unfolded protein response +GO:1904729,regulation of intestinal lipid absorption +GO:1904730,negative regulation of intestinal lipid absorption +GO:1904742,regulation of telomeric DNA binding +GO:1904744,positive regulation of telomeric DNA binding +GO:1904746,negative regulation of apoptotic process involved in development +GO:1904747,positive regulation of apoptotic process involved in development +GO:1904748,regulation of apoptotic process involved in development +GO:1904749,regulation of protein localization to nucleolus +GO:1904751,positive regulation of protein localization to nucleolus +GO:1904806,regulation of protein oxidation +GO:1904808,positive regulation of protein oxidation +GO:1904814,"regulation of protein localization to chromosome, telomeric region" +GO:1904815,"negative regulation of protein localization to chromosome, telomeric region" +GO:1904816,"positive regulation of protein localization to chromosome, telomeric region" +GO:1904823,purine nucleobase transmembrane transport +GO:1904833,positive regulation of removal of superoxide radicals +GO:1904847,regulation of cell chemotaxis to fibroblast growth factor +GO:1904849,positive regulation of cell chemotaxis to fibroblast growth factor +GO:1904851,positive regulation of establishment of protein localization to telomere +GO:1904861,excitatory synapse assembly +GO:1904869,regulation of protein localization to Cajal body +GO:1904871,positive regulation of protein localization to Cajal body +GO:1904872,regulation of telomerase RNA localization to Cajal body +GO:1904874,positive regulation of telomerase RNA localization to Cajal body +GO:1904882,regulation of telomerase catalytic core complex assembly +GO:1904884,positive regulation of telomerase catalytic core complex assembly +GO:1904888,cranial skeletal system development +GO:1904892,regulation of STAT cascade +GO:1904893,negative regulation of STAT cascade +GO:1904894,positive regulation of STAT cascade +GO:1904896,ESCRT complex disassembly +GO:1904903,ESCRT III complex disassembly +GO:1904907,"regulation of maintenance of mitotic sister chromatid cohesion, telomeric" +GO:1904908,"negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric" +GO:1904936,interneuron migration +GO:1904948,midbrain dopaminergic neuron differentiation +GO:1904950,negative regulation of establishment of protein localization +GO:1904951,positive regulation of establishment of protein localization +GO:1904953,Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation +GO:1990000,amyloid fibril formation +GO:1990001,inhibition of cysteine-type endopeptidase activity involved in apoptotic process +GO:1990009,retinal cell apoptotic process +GO:1990034,calcium ion export from cell +GO:1990035,calcium ion import into cell +GO:1990051,activation of protein kinase C activity +GO:1990086,lens fiber cell apoptotic process +GO:1990089,response to nerve growth factor +GO:1990090,cellular response to nerve growth factor stimulus +GO:1990123,L-glutamate import into cell +GO:1990126,"retrograde transport, endosome to plasma membrane" +GO:1990138,neuron projection extension +GO:1990144,intrinsic apoptotic signaling pathway in response to hypoxia +GO:1990164,histone H2A phosphorylation +GO:1990166,protein localization to site of double-strand break +GO:1990167,protein K27-linked deubiquitination +GO:1990168,protein K33-linked deubiquitination +GO:1990169,stress response to copper ion +GO:1990172,G-protein coupled receptor catabolic process +GO:1990182,exosomal secretion +GO:1990253,cellular response to leucine starvation +GO:1990266,neutrophil migration +GO:1990267,response to transition metal nanoparticle +GO:1990268,response to gold nanoparticle +GO:1990314,cellular response to insulin-like growth factor stimulus +GO:1990403,embryonic brain development +GO:1990416,cellular response to brain-derived neurotrophic factor stimulus +GO:1990418,response to insulin-like growth factor stimulus +GO:1990426,homologous recombination-dependent replication fork processing +GO:1990440,positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress +GO:1990441,negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress +GO:1990481,mRNA pseudouridine synthesis +GO:1990502,dense core granule maturation +GO:1990523,bone regeneration +GO:1990542,mitochondrial transmembrane transport +GO:1990564,protein polyufmylation +GO:1990569,UDP-N-acetylglucosamine transmembrane transport +GO:1990573,potassium ion import across plasma membrane +GO:1990592,protein K69-linked ufmylation +GO:1990619,histone H3-K9 deacetylation +GO:1990637,response to prolactin +GO:1990705,cholangiocyte proliferation +GO:1990709,presynaptic active zone organization +GO:1990737,response to manganese-induced endoplasmic reticulum stress +GO:1990743,protein sialylation +GO:1990748,cellular detoxification +GO:1990776,response to angiotensin +GO:1990778,protein localization to cell periphery +GO:1990822,basic amino acid transmembrane transport +GO:1990845,adaptive thermogenesis +GO:2000001,regulation of DNA damage checkpoint +GO:2000002,negative regulation of DNA damage checkpoint +GO:2000008,regulation of protein localization to cell surface +GO:2000009,negative regulation of protein localization to cell surface +GO:2000010,positive regulation of protein localization to cell surface +GO:2000015,regulation of determination of dorsal identity +GO:2000017,positive regulation of determination of dorsal identity +GO:2000018,regulation of male gonad development +GO:2000020,positive regulation of male gonad development +GO:2000021,regulation of ion homeostasis +GO:2000027,regulation of organ morphogenesis +GO:2000035,regulation of stem cell division +GO:2000036,regulation of stem cell population maintenance +GO:2000040,regulation of planar cell polarity pathway involved in axis elongation +GO:2000041,negative regulation of planar cell polarity pathway involved in axis elongation +GO:2000042,negative regulation of double-strand break repair via homologous recombination +GO:2000043,regulation of cardiac cell fate specification +GO:2000045,regulation of G1/S transition of mitotic cell cycle +GO:2000047,regulation of cell-cell adhesion mediated by cadherin +GO:2000048,negative regulation of cell-cell adhesion mediated by cadherin +GO:2000049,positive regulation of cell-cell adhesion mediated by cadherin +GO:2000050,regulation of non-canonical Wnt signaling pathway +GO:2000051,negative regulation of non-canonical Wnt signaling pathway +GO:2000052,positive regulation of non-canonical Wnt signaling pathway +GO:2000053,regulation of Wnt signaling pathway involved in dorsal/ventral axis specification +GO:2000054,negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification +GO:2000058,regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process +GO:2000059,negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process +GO:2000060,positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process +GO:2000064,regulation of cortisol biosynthetic process +GO:2000065,negative regulation of cortisol biosynthetic process +GO:2000074,regulation of type B pancreatic cell development +GO:2000077,negative regulation of type B pancreatic cell development +GO:2000078,positive regulation of type B pancreatic cell development +GO:2000079,regulation of canonical Wnt signaling pathway involved in controlling type B pancreatic cell proliferation +GO:2000095,"regulation of Wnt signaling pathway, planar cell polarity pathway" +GO:2000096,"positive regulation of Wnt signaling pathway, planar cell polarity pathway" +GO:2000097,regulation of smooth muscle cell-matrix adhesion +GO:2000098,negative regulation of smooth muscle cell-matrix adhesion +GO:2000104,negative regulation of DNA-dependent DNA replication +GO:2000105,positive regulation of DNA-dependent DNA replication +GO:2000106,regulation of leukocyte apoptotic process +GO:2000107,negative regulation of leukocyte apoptotic process +GO:2000108,positive regulation of leukocyte apoptotic process +GO:2000109,regulation of macrophage apoptotic process +GO:2000110,negative regulation of macrophage apoptotic process +GO:2000111,positive regulation of macrophage apoptotic process +GO:2000114,regulation of establishment of cell polarity +GO:2000116,regulation of cysteine-type endopeptidase activity +GO:2000117,negative regulation of cysteine-type endopeptidase activity +GO:2000118,regulation of sodium-dependent phosphate transport +GO:2000121,regulation of removal of superoxide radicals +GO:2000124,regulation of endocannabinoid signaling pathway +GO:2000134,negative regulation of G1/S transition of mitotic cell cycle +GO:2000136,regulation of cell proliferation involved in heart morphogenesis +GO:2000138,positive regulation of cell proliferation involved in heart morphogenesis +GO:2000142,"regulation of DNA-templated transcription, initiation" +GO:2000143,"negative regulation of DNA-templated transcription, initiation" +GO:2000144,"positive regulation of DNA-templated transcription, initiation" +GO:2000145,regulation of cell motility +GO:2000146,negative regulation of cell motility +GO:2000147,positive regulation of cell motility +GO:2000152,regulation of ubiquitin-specific protease activity +GO:2000156,"regulation of retrograde vesicle-mediated transport, Golgi to ER" +GO:2000157,negative regulation of ubiquitin-specific protease activity +GO:2000169,regulation of peptidyl-cysteine S-nitrosylation +GO:2000170,positive regulation of peptidyl-cysteine S-nitrosylation +GO:2000171,negative regulation of dendrite development +GO:2000172,regulation of branching morphogenesis of a nerve +GO:2000173,negative regulation of branching morphogenesis of a nerve +GO:2000177,regulation of neural precursor cell proliferation +GO:2000178,negative regulation of neural precursor cell proliferation +GO:2000179,positive regulation of neural precursor cell proliferation +GO:2000181,negative regulation of blood vessel morphogenesis +GO:2000188,regulation of cholesterol homeostasis +GO:2000189,positive regulation of cholesterol homeostasis +GO:2000191,regulation of fatty acid transport +GO:2000192,negative regulation of fatty acid transport +GO:2000193,positive regulation of fatty acid transport +GO:2000194,regulation of female gonad development +GO:2000195,negative regulation of female gonad development +GO:2000196,positive regulation of female gonad development +GO:2000197,regulation of ribonucleoprotein complex localization +GO:2000209,regulation of anoikis +GO:2000210,positive regulation of anoikis +GO:2000211,regulation of glutamate metabolic process +GO:2000224,regulation of testosterone biosynthetic process +GO:2000229,regulation of pancreatic stellate cell proliferation +GO:2000232,regulation of rRNA processing +GO:2000233,negative regulation of rRNA processing +GO:2000241,regulation of reproductive process +GO:2000242,negative regulation of reproductive process +GO:2000243,positive regulation of reproductive process +GO:2000249,regulation of actin cytoskeleton reorganization +GO:2000251,positive regulation of actin cytoskeleton reorganization +GO:2000252,negative regulation of feeding behavior +GO:2000253,positive regulation of feeding behavior +GO:2000254,regulation of male germ cell proliferation +GO:2000255,negative regulation of male germ cell proliferation +GO:2000257,regulation of protein activation cascade +GO:2000258,negative regulation of protein activation cascade +GO:2000259,positive regulation of protein activation cascade +GO:2000269,regulation of fibroblast apoptotic process +GO:2000270,negative regulation of fibroblast apoptotic process +GO:2000271,positive regulation of fibroblast apoptotic process +GO:2000272,negative regulation of receptor activity +GO:2000273,positive regulation of receptor activity +GO:2000275,regulation of oxidative phosphorylation uncoupler activity +GO:2000276,negative regulation of oxidative phosphorylation uncoupler activity +GO:2000278,regulation of DNA biosynthetic process +GO:2000279,negative regulation of DNA biosynthetic process +GO:2000282,regulation of cellular amino acid biosynthetic process +GO:2000286,receptor internalization involved in canonical Wnt signaling pathway +GO:2000288,positive regulation of myoblast proliferation +GO:2000291,regulation of myoblast proliferation +GO:2000295,regulation of hydrogen peroxide catabolic process +GO:2000296,negative regulation of hydrogen peroxide catabolic process +GO:2000297,negative regulation of synapse maturation +GO:2000300,regulation of synaptic vesicle exocytosis +GO:2000301,negative regulation of synaptic vesicle exocytosis +GO:2000302,positive regulation of synaptic vesicle exocytosis +GO:2000303,regulation of ceramide biosynthetic process +GO:2000304,positive regulation of ceramide biosynthetic process +GO:2000307,regulation of tumor necrosis factor (ligand) superfamily member 11 production +GO:2000309,positive regulation of tumor necrosis factor (ligand) superfamily member 11 production +GO:2000310,regulation of N-methyl-D-aspartate selective glutamate receptor activity +GO:2000311,regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity +GO:2000312,regulation of kainate selective glutamate receptor activity +GO:2000313,regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation +GO:2000316,regulation of T-helper 17 type immune response +GO:2000317,negative regulation of T-helper 17 type immune response +GO:2000318,positive regulation of T-helper 17 type immune response +GO:2000319,regulation of T-helper 17 cell differentiation +GO:2000320,negative regulation of T-helper 17 cell differentiation +GO:2000321,positive regulation of T-helper 17 cell differentiation +GO:2000322,regulation of glucocorticoid receptor signaling pathway +GO:2000323,negative regulation of glucocorticoid receptor signaling pathway +GO:2000324,positive regulation of glucocorticoid receptor signaling pathway +GO:2000325,regulation of ligand-dependent nuclear receptor transcription coactivator activity +GO:2000327,positive regulation of ligand-dependent nuclear receptor transcription coactivator activity +GO:2000328,regulation of T-helper 17 cell lineage commitment +GO:2000330,positive regulation of T-helper 17 cell lineage commitment +GO:2000341,regulation of chemokine (C-X-C motif) ligand 2 production +GO:2000342,negative regulation of chemokine (C-X-C motif) ligand 2 production +GO:2000343,positive regulation of chemokine (C-X-C motif) ligand 2 production +GO:2000344,positive regulation of acrosome reaction +GO:2000345,regulation of hepatocyte proliferation +GO:2000346,negative regulation of hepatocyte proliferation +GO:2000347,positive regulation of hepatocyte proliferation +GO:2000348,regulation of CD40 signaling pathway +GO:2000349,negative regulation of CD40 signaling pathway +GO:2000351,regulation of endothelial cell apoptotic process +GO:2000352,negative regulation of endothelial cell apoptotic process +GO:2000353,positive regulation of endothelial cell apoptotic process +GO:2000354,regulation of ovarian follicle development +GO:2000359,regulation of binding of sperm to zona pellucida +GO:2000360,negative regulation of binding of sperm to zona pellucida +GO:2000364,regulation of STAT protein import into nucleus +GO:2000366,positive regulation of STAT protein import into nucleus +GO:2000369,regulation of clathrin-mediated endocytosis +GO:2000370,positive regulation of clathrin-mediated endocytosis +GO:2000371,regulation of DNA topoisomerase (ATP-hydrolyzing) activity +GO:2000373,positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity +GO:2000374,regulation of oxygen metabolic process +GO:2000377,regulation of reactive oxygen species metabolic process +GO:2000378,negative regulation of reactive oxygen species metabolic process +GO:2000379,positive regulation of reactive oxygen species metabolic process +GO:2000380,regulation of mesoderm development +GO:2000381,negative regulation of mesoderm development +GO:2000382,positive regulation of mesoderm development +GO:2000386,positive regulation of ovarian follicle development +GO:2000387,regulation of antral ovarian follicle growth +GO:2000388,positive regulation of antral ovarian follicle growth +GO:2000389,regulation of neutrophil extravasation +GO:2000391,positive regulation of neutrophil extravasation +GO:2000392,regulation of lamellipodium morphogenesis +GO:2000393,negative regulation of lamellipodium morphogenesis +GO:2000394,positive regulation of lamellipodium morphogenesis +GO:2000395,regulation of ubiquitin-dependent endocytosis +GO:2000397,positive regulation of ubiquitin-dependent endocytosis +GO:2000398,regulation of thymocyte aggregation +GO:2000399,negative regulation of thymocyte aggregation +GO:2000400,positive regulation of thymocyte aggregation +GO:2000401,regulation of lymphocyte migration +GO:2000402,negative regulation of lymphocyte migration +GO:2000403,positive regulation of lymphocyte migration +GO:2000404,regulation of T cell migration +GO:2000406,positive regulation of T cell migration +GO:2000407,regulation of T cell extravasation +GO:2000409,positive regulation of T cell extravasation +GO:2000410,regulation of thymocyte migration +GO:2000412,positive regulation of thymocyte migration +GO:2000416,regulation of eosinophil migration +GO:2000417,negative regulation of eosinophil migration +GO:2000418,positive regulation of eosinophil migration +GO:2000422,regulation of eosinophil chemotaxis +GO:2000424,positive regulation of eosinophil chemotaxis +GO:2000425,regulation of apoptotic cell clearance +GO:2000427,positive regulation of apoptotic cell clearance +GO:2000437,regulation of monocyte extravasation +GO:2000439,positive regulation of monocyte extravasation +GO:2000449,"regulation of CD8-positive, alpha-beta T cell extravasation" +GO:2000451,"positive regulation of CD8-positive, alpha-beta T cell extravasation" +GO:2000452,"regulation of CD8-positive, alpha-beta cytotoxic T cell extravasation" +GO:2000463,positive regulation of excitatory postsynaptic potential +GO:2000465,regulation of glycogen (starch) synthase activity +GO:2000466,negative regulation of glycogen (starch) synthase activity +GO:2000467,positive regulation of glycogen (starch) synthase activity +GO:2000468,regulation of peroxidase activity +GO:2000471,regulation of hematopoietic stem cell migration +GO:2000473,positive regulation of hematopoietic stem cell migration +GO:2000474,regulation of opioid receptor signaling pathway +GO:2000479,regulation of cAMP-dependent protein kinase activity +GO:2000480,negative regulation of cAMP-dependent protein kinase activity +GO:2000481,positive regulation of cAMP-dependent protein kinase activity +GO:2000482,regulation of interleukin-8 secretion +GO:2000483,negative regulation of interleukin-8 secretion +GO:2000484,positive regulation of interleukin-8 secretion +GO:2000485,regulation of glutamine transport +GO:2000489,regulation of hepatic stellate cell activation +GO:2000491,positive regulation of hepatic stellate cell activation +GO:2000501,regulation of natural killer cell chemotaxis +GO:2000502,negative regulation of natural killer cell chemotaxis +GO:2000503,positive regulation of natural killer cell chemotaxis +GO:2000504,positive regulation of blood vessel remodeling +GO:2000505,regulation of energy homeostasis +GO:2000507,positive regulation of energy homeostasis +GO:2000508,regulation of dendritic cell chemotaxis +GO:2000510,positive regulation of dendritic cell chemotaxis +GO:2000514,"regulation of CD4-positive, alpha-beta T cell activation" +GO:2000515,"negative regulation of CD4-positive, alpha-beta T cell activation" +GO:2000516,"positive regulation of CD4-positive, alpha-beta T cell activation" +GO:2000520,regulation of immunological synapse formation +GO:2000523,regulation of T cell costimulation +GO:2000525,positive regulation of T cell costimulation +GO:2000532,regulation of renal albumin absorption +GO:2000535,regulation of entry of bacterium into host cell +GO:2000537,regulation of B cell chemotaxis +GO:2000538,positive regulation of B cell chemotaxis +GO:2000542,negative regulation of gastrulation +GO:2000543,positive regulation of gastrulation +GO:2000544,regulation of endothelial cell chemotaxis to fibroblast growth factor +GO:2000546,positive regulation of endothelial cell chemotaxis to fibroblast growth factor +GO:2000547,regulation of dendritic cell dendrite assembly +GO:2000551,regulation of T-helper 2 cell cytokine production +GO:2000552,negative regulation of T-helper 2 cell cytokine production +GO:2000553,positive regulation of T-helper 2 cell cytokine production +GO:2000561,"regulation of CD4-positive, alpha-beta T cell proliferation" +GO:2000562,"negative regulation of CD4-positive, alpha-beta T cell proliferation" +GO:2000563,"positive regulation of CD4-positive, alpha-beta T cell proliferation" +GO:2000564,"regulation of CD8-positive, alpha-beta T cell proliferation" +GO:2000566,"positive regulation of CD8-positive, alpha-beta T cell proliferation" +GO:2000567,regulation of memory T cell activation +GO:2000568,positive regulation of memory T cell activation +GO:2000569,regulation of T-helper 2 cell activation +GO:2000570,positive regulation of T-helper 2 cell activation +GO:2000573,positive regulation of DNA biosynthetic process +GO:2000574,regulation of microtubule motor activity +GO:2000583,regulation of platelet-derived growth factor receptor-alpha signaling pathway +GO:2000584,negative regulation of platelet-derived growth factor receptor-alpha signaling pathway +GO:2000586,regulation of platelet-derived growth factor receptor-beta signaling pathway +GO:2000587,negative regulation of platelet-derived growth factor receptor-beta signaling pathway +GO:2000589,regulation of metanephric mesenchymal cell migration +GO:2000591,positive regulation of metanephric mesenchymal cell migration +GO:2000592,regulation of metanephric DCT cell differentiation +GO:2000594,positive regulation of metanephric DCT cell differentiation +GO:2000598,regulation of cyclin catabolic process +GO:2000599,negative regulation of cyclin catabolic process +GO:2000601,positive regulation of Arp2/3 complex-mediated actin nucleation +GO:2000609,regulation of thyroid hormone generation +GO:2000611,positive regulation of thyroid hormone generation +GO:2000615,regulation of histone H3-K9 acetylation +GO:2000617,positive regulation of histone H3-K9 acetylation +GO:2000618,regulation of histone H4-K16 acetylation +GO:2000619,negative regulation of histone H4-K16 acetylation +GO:2000620,positive regulation of histone H4-K16 acetylation +GO:2000622,"regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" +GO:2000623,"negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" +GO:2000625,regulation of miRNA catabolic process +GO:2000627,positive regulation of miRNA catabolic process +GO:2000628,regulation of miRNA metabolic process +GO:2000630,positive regulation of miRNA metabolic process +GO:2000637,positive regulation of gene silencing by miRNA +GO:2000641,regulation of early endosome to late endosome transport +GO:2000642,negative regulation of early endosome to late endosome transport +GO:2000643,positive regulation of early endosome to late endosome transport +GO:2000644,regulation of receptor catabolic process +GO:2000645,negative regulation of receptor catabolic process +GO:2000646,positive regulation of receptor catabolic process +GO:2000647,negative regulation of stem cell proliferation +GO:2000648,positive regulation of stem cell proliferation +GO:2000649,regulation of sodium ion transmembrane transporter activity +GO:2000650,negative regulation of sodium ion transmembrane transporter activity +GO:2000651,positive regulation of sodium ion transmembrane transporter activity +GO:2000653,regulation of genetic imprinting +GO:2000659,regulation of interleukin-1-mediated signaling pathway +GO:2000660,negative regulation of interleukin-1-mediated signaling pathway +GO:2000662,regulation of interleukin-5 secretion +GO:2000663,negative regulation of interleukin-5 secretion +GO:2000664,positive regulation of interleukin-5 secretion +GO:2000665,regulation of interleukin-13 secretion +GO:2000666,negative regulation of interleukin-13 secretion +GO:2000667,positive regulation of interleukin-13 secretion +GO:2000668,regulation of dendritic cell apoptotic process +GO:2000669,negative regulation of dendritic cell apoptotic process +GO:2000670,positive regulation of dendritic cell apoptotic process +GO:2000671,regulation of motor neuron apoptotic process +GO:2000672,negative regulation of motor neuron apoptotic process +GO:2000674,regulation of type B pancreatic cell apoptotic process +GO:2000675,negative regulation of type B pancreatic cell apoptotic process +GO:2000676,positive regulation of type B pancreatic cell apoptotic process +GO:2000677,regulation of transcription regulatory region DNA binding +GO:2000678,negative regulation of transcription regulatory region DNA binding +GO:2000679,positive regulation of transcription regulatory region DNA binding +GO:2000680,regulation of rubidium ion transport +GO:2000681,negative regulation of rubidium ion transport +GO:2000683,regulation of cellular response to X-ray +GO:2000686,regulation of rubidium ion transmembrane transporter activity +GO:2000687,negative regulation of rubidium ion transmembrane transporter activity +GO:2000696,regulation of epithelial cell differentiation involved in kidney development +GO:2000697,negative regulation of epithelial cell differentiation involved in kidney development +GO:2000698,positive regulation of epithelial cell differentiation involved in kidney development +GO:2000705,regulation of dense core granule biogenesis +GO:2000707,positive regulation of dense core granule biogenesis +GO:2000721,positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation +GO:2000722,regulation of cardiac vascular smooth muscle cell differentiation +GO:2000724,positive regulation of cardiac vascular smooth muscle cell differentiation +GO:2000725,regulation of cardiac muscle cell differentiation +GO:2000726,negative regulation of cardiac muscle cell differentiation +GO:2000727,positive regulation of cardiac muscle cell differentiation +GO:2000729,positive regulation of mesenchymal cell proliferation involved in ureter development +GO:2000736,regulation of stem cell differentiation +GO:2000737,negative regulation of stem cell differentiation +GO:2000738,positive regulation of stem cell differentiation +GO:2000739,regulation of mesenchymal stem cell differentiation +GO:2000741,positive regulation of mesenchymal stem cell differentiation +GO:2000742,regulation of anterior head development +GO:2000744,positive regulation of anterior head development +GO:2000756,regulation of peptidyl-lysine acetylation +GO:2000757,negative regulation of peptidyl-lysine acetylation +GO:2000758,positive regulation of peptidyl-lysine acetylation +GO:2000765,regulation of cytoplasmic translation +GO:2000766,negative regulation of cytoplasmic translation +GO:2000767,positive regulation of cytoplasmic translation +GO:2000768,positive regulation of nephron tubule epithelial cell differentiation +GO:2000772,regulation of cellular senescence +GO:2000773,negative regulation of cellular senescence +GO:2000774,positive regulation of cellular senescence +GO:2000777,positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia +GO:2000778,positive regulation of interleukin-6 secretion +GO:2000779,regulation of double-strand break repair +GO:2000780,negative regulation of double-strand break repair +GO:2000781,positive regulation of double-strand break repair +GO:2000785,regulation of autophagosome assembly +GO:2000786,positive regulation of autophagosome assembly +GO:2000790,regulation of mesenchymal cell proliferation involved in lung development +GO:2000791,negative regulation of mesenchymal cell proliferation involved in lung development +GO:2000794,regulation of epithelial cell proliferation involved in lung morphogenesis +GO:2000807,regulation of synaptic vesicle clustering +GO:2000809,positive regulation of synaptic vesicle clustering +GO:2000810,regulation of bicellular tight junction assembly +GO:2000811,negative regulation of anoikis +GO:2000812,regulation of barbed-end actin filament capping +GO:2000813,negative regulation of barbed-end actin filament capping +GO:2000816,negative regulation of mitotic sister chromatid separation +GO:2000818,negative regulation of myoblast proliferation +GO:2000819,regulation of nucleotide-excision repair +GO:2000820,negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation +GO:2000821,regulation of grooming behavior +GO:2000822,regulation of behavioral fear response +GO:2000823,regulation of androgen receptor activity +GO:2000824,negative regulation of androgen receptor activity +GO:2000825,positive regulation of androgen receptor activity +GO:2000826,regulation of heart morphogenesis +GO:2000831,regulation of steroid hormone secretion +GO:2000832,negative regulation of steroid hormone secretion +GO:2000833,positive regulation of steroid hormone secretion +GO:2000834,regulation of androgen secretion +GO:2000836,positive regulation of androgen secretion +GO:2000846,regulation of corticosteroid hormone secretion +GO:2000847,negative regulation of corticosteroid hormone secretion +GO:2000848,positive regulation of corticosteroid hormone secretion +GO:2000849,regulation of glucocorticoid secretion +GO:2000850,negative regulation of glucocorticoid secretion +GO:2000851,positive regulation of glucocorticoid secretion +GO:2000852,regulation of corticosterone secretion +GO:2000854,positive regulation of corticosterone secretion +GO:2000855,regulation of mineralocorticoid secretion +GO:2000857,positive regulation of mineralocorticoid secretion +GO:2000858,regulation of aldosterone secretion +GO:2000860,positive regulation of aldosterone secretion +GO:2000870,regulation of progesterone secretion +GO:2000878,positive regulation of oligopeptide transport +GO:2000880,positive regulation of dipeptide transport +GO:2000909,regulation of sterol import +GO:2000910,negative regulation of sterol import +GO:2000969,positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity +GO:2000973,regulation of pro-B cell differentiation +GO:2000974,negative regulation of pro-B cell differentiation +GO:2000977,regulation of forebrain neuron differentiation +GO:2000978,negative regulation of forebrain neuron differentiation +GO:2000980,regulation of inner ear receptor cell differentiation +GO:2000981,negative regulation of inner ear receptor cell differentiation +GO:2000983,regulation of ATP citrate synthase activity +GO:2000984,negative regulation of ATP citrate synthase activity +GO:2000987,positive regulation of behavioral fear response +GO:2001012,mesenchymal cell differentiation involved in renal system development +GO:2001013,epithelial cell proliferation involved in renal tubule morphogenesis +GO:2001014,regulation of skeletal muscle cell differentiation +GO:2001015,negative regulation of skeletal muscle cell differentiation +GO:2001016,positive regulation of skeletal muscle cell differentiation +GO:2001020,regulation of response to DNA damage stimulus +GO:2001021,negative regulation of response to DNA damage stimulus +GO:2001022,positive regulation of response to DNA damage stimulus +GO:2001023,regulation of response to drug +GO:2001025,positive regulation of response to drug +GO:2001026,regulation of endothelial cell chemotaxis +GO:2001027,negative regulation of endothelial cell chemotaxis +GO:2001028,positive regulation of endothelial cell chemotaxis +GO:2001029,regulation of cellular glucuronidation +GO:2001030,negative regulation of cellular glucuronidation +GO:2001032,regulation of double-strand break repair via nonhomologous end joining +GO:2001033,negative regulation of double-strand break repair via nonhomologous end joining +GO:2001034,positive regulation of double-strand break repair via nonhomologous end joining +GO:2001038,regulation of cellular response to drug +GO:2001044,regulation of integrin-mediated signaling pathway +GO:2001045,negative regulation of integrin-mediated signaling pathway +GO:2001046,positive regulation of integrin-mediated signaling pathway +GO:2001053,regulation of mesenchymal cell apoptotic process +GO:2001054,negative regulation of mesenchymal cell apoptotic process +GO:2001055,positive regulation of mesenchymal cell apoptotic process +GO:2001056,positive regulation of cysteine-type endopeptidase activity +GO:2001057,reactive nitrogen species metabolic process +GO:2001074,regulation of metanephric ureteric bud development +GO:2001076,positive regulation of metanephric ureteric bud development +GO:2001106,regulation of Rho guanyl-nucleotide exchange factor activity +GO:2001109,regulation of lens epithelial cell proliferation +GO:2001111,positive regulation of lens epithelial cell proliferation +GO:2001135,regulation of endocytic recycling +GO:2001137,positive regulation of endocytic recycling +GO:2001138,regulation of phospholipid transport +GO:2001140,positive regulation of phospholipid transport +GO:2001148,regulation of dipeptide transmembrane transport +GO:2001150,positive regulation of dipeptide transmembrane transport +GO:2001160,regulation of histone H3-K79 methylation +GO:2001162,positive regulation of histone H3-K79 methylation +GO:2001166,regulation of histone H2B ubiquitination +GO:2001168,positive regulation of histone H2B ubiquitination +GO:2001169,regulation of ATP biosynthetic process +GO:2001170,negative regulation of ATP biosynthetic process +GO:2001171,positive regulation of ATP biosynthetic process +GO:2001179,regulation of interleukin-10 secretion +GO:2001180,negative regulation of interleukin-10 secretion +GO:2001181,positive regulation of interleukin-10 secretion +GO:2001182,regulation of interleukin-12 secretion +GO:2001183,negative regulation of interleukin-12 secretion +GO:2001184,positive regulation of interleukin-12 secretion +GO:2001185,"regulation of CD8-positive, alpha-beta T cell activation" +GO:2001186,"negative regulation of CD8-positive, alpha-beta T cell activation" +GO:2001187,"positive regulation of CD8-positive, alpha-beta T cell activation" +GO:2001188,regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell +GO:2001189,negative regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell +GO:2001190,positive regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell +GO:2001198,regulation of dendritic cell differentiation +GO:2001199,negative regulation of dendritic cell differentiation +GO:2001200,positive regulation of dendritic cell differentiation +GO:2001201,regulation of transforming growth factor-beta secretion +GO:2001202,negative regulation of transforming growth factor-beta secretion +GO:2001204,regulation of osteoclast development +GO:2001205,negative regulation of osteoclast development +GO:2001206,positive regulation of osteoclast development +GO:2001212,regulation of vasculogenesis +GO:2001214,positive regulation of vasculogenesis +GO:2001222,regulation of neuron migration +GO:2001223,negative regulation of neuron migration +GO:2001224,positive regulation of neuron migration +GO:2001225,regulation of chloride transport +GO:2001233,regulation of apoptotic signaling pathway +GO:2001234,negative regulation of apoptotic signaling pathway +GO:2001235,positive regulation of apoptotic signaling pathway +GO:2001236,regulation of extrinsic apoptotic signaling pathway +GO:2001237,negative regulation of extrinsic apoptotic signaling pathway +GO:2001238,positive regulation of extrinsic apoptotic signaling pathway +GO:2001239,regulation of extrinsic apoptotic signaling pathway in absence of ligand +GO:2001240,negative regulation of extrinsic apoptotic signaling pathway in absence of ligand +GO:2001241,positive regulation of extrinsic apoptotic signaling pathway in absence of ligand +GO:2001242,regulation of intrinsic apoptotic signaling pathway +GO:2001243,negative regulation of intrinsic apoptotic signaling pathway +GO:2001244,positive regulation of intrinsic apoptotic signaling pathway +GO:2001245,regulation of phosphatidylcholine biosynthetic process +GO:2001251,negative regulation of chromosome organization +GO:2001252,positive regulation of chromosome organization +GO:2001256,regulation of store-operated calcium entry +GO:2001257,regulation of cation channel activity +GO:2001258,negative regulation of cation channel activity +GO:2001259,positive regulation of cation channel activity +GO:2001267,regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway +GO:2001268,negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway +GO:2001269,positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway +GO:2001270,regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis +GO:2001271,negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis +GO:2001273,regulation of glucose import in response to insulin stimulus +GO:2001274,negative regulation of glucose import in response to insulin stimulus +GO:2001275,positive regulation of glucose import in response to insulin stimulus +GO:2001279,regulation of unsaturated fatty acid biosynthetic process +GO:2001280,positive regulation of unsaturated fatty acid biosynthetic process +GO:2001286,regulation of caveolin-mediated endocytosis +GO:2001287,negative regulation of caveolin-mediated endocytosis +GO:2001288,positive regulation of caveolin-mediated endocytosis +GO:2001293,malonyl-CoA metabolic process +GO:2001295,malonyl-CoA biosynthetic process +GO:2001300,lipoxin metabolic process +GO:2001301,lipoxin biosynthetic process +GO:2001302,lipoxin A4 metabolic process +GO:2001303,lipoxin A4 biosynthetic process diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/Gene.csv b/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/Gene.csv new file mode 100644 index 0000000..77d1946 --- /dev/null +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/Gene.csv @@ -0,0 +1,20946 @@ +id,name +1,A1BG +10,NAT2 +100,ADA +1000,CDH2 +10000,AKT3 +100008586,GAGE12F +10001,MED6 +10002,NR2E3 +10003,NAALAD2 +100033411,DUXB +100037417,DDTL +10004,NAALADL1 +100049579,OCTN3 +100049587,SIGLEC14 +10005,ACOT8 +10006,ABI1 +10007,GNPDA1 +10008,KCNE3 +10009,ZBTB33 +1001,CDH3 +10010,TANK +100101267,POM121C +100101467,ZSCAN30 +100101629,GAGE8 +10011,SRA1 +100113407,TMEM170B +100125288,ZGLP1 +100127206,KIAA1024L +100127889,C10orf131 +100127971,LOC100127971 +100127983,C8orf88 +100127991,LOC100127991 +100128001,LOC100128001 +100128071,FAM229A +100128088,LOC100128088 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+253190,SERHL2 +2532,ACKR1 +253260,RICTOR +2533,FYB +253314,EIF4E1B +2534,FYN +253430,IPMK +253461,ZBTB38 +2535,FZD2 +253512,SLC25A30 +253558,LCLAT1 +253559,CADM2 +253582,TMEM244 +253635,GPATCH11 +253639,ZNF620 +253650,ANKRD18A +2537,IFI6 +253714,MMS22L +253725,FAM21C +253738,EBF3 +253769,WDR27 +253782,CERS6 +2538,G6PC +253827,MSRB3 +253832,ZDHHC20 +2539,G6PD +253935,ANGPTL5 +253943,YTHDF3 +253959,RALGAPA1 +253970,SFTA3 +253980,KCTD13 +253982,ASPHD1 +254013,METTL20 +254042,METAP1D +254048,UBN2 +254050,LRRC43 +254065,BRWD3 +2541,G6PR +254102,EHBP1L1 +254122,SNX32 +254158,CXorf58 +254170,FBXO33 +254173,TTLL10 +254187,TSGA10IP +2542,SLC37A4 +254225,RNF169 +254228,FAM26E +254240,BPIFC +254251,LCORL +254263,CNIH2 +254268,AKNAD1 +254272,TBC1D28 +254295,PHYHD1 +2543,GAGE1 +254359,ZDHHC24 +254394,MCM9 +254427,PROSER2 +254428,SLC41A1 +254439,C11orf86 +254528,MEIOB +254531,LPCAT4 +254552,NUDT8 +2547,XRCC6 +254773,LYG2 +254778,C8orf46 +254783,OR6C74 +254786,OR6C3 +2548,GAA +254827,NAALADL2 +254863,TMEM256 +254879,OR2T6 +254887,ZDHHC23 +2549,GAB1 +254910,LCE5A +254950,KRTAP15-1 +254956,MORN5 +254973,OR1L4 +2550,GABBR1 +255022,CALHM1 +255027,MPV17L +255042,MGC16723 +255043,TMEM86B +255057,C19orf26 +255061,TAC4 +2551,GABPA +255101,CCDC108 +255104,TMCO4 +255119,C4orf22 +255189,PLA2G4F +255220,TXNDC8 +255231,MCOLN2 +255239,ANKK1 +255252,LRRC57 +255275,MYADML2 +2553,GABPB1 +255313,CT47A11 +255324,EPGN +255349,TMEM211 +255374,MBLAC1 +255394,TCP11L2 +2554,GABRA1 +255403,ZNF718 +255426,RASGEF1C +255488,RNF144B +2555,GABRA2 +255520,ELMOD2 +2556,GABRA3 +255626,HIST1H2BA +255631,COL24A1 +2557,GABRA4 +255725,OR52B2 +255738,PCSK9 +255743,NPNT +255758,TCTEX1D2 +255762,PDZD9 +255783,INAFM1 +255798,SMCO1 +2558,GABRA5 +255809,C19orf38 +255877,BCL6B +2559,GABRA6 +255919,CNEP1R1 +255928,SYT14 +255967,PAN3 +2560,GABRB1 +256006,ANKRD31 +256021,C12orf79 +256051,ZNF549 +256076,COL6A5 +2561,GABRB2 +256126,SYCE2 +256130,TMEM196 +256144,OR4C3 +256148,OR4S1 +256158,HMCN2 +2562,GABRB3 +256223,CDRT15L2 +256227,STEAP1B +256281,NUDT14 +256297,PTF1A +2563,GABRD +256302,NATD1 +256309,CCDC110 +256329,LMNTD2 +256356,GK5 +256364,EML3 +256380,SCML4 +256394,SERPINA11 +2564,GABRE +256435,ST6GALNAC3 +256471,MFSD8 +256472,TMEM151A +2565,GABRG1 +256536,TCERG1L +256586,LYSMD2 +2566,GABRG2 +256643,CXorf23 +256646,NUTM1 +256691,MAMDC2 +2567,GABRG3 +256710,GLIPR1L1 +256714,MAP7D2 +256764,WDR72 +2568,GABRP +256815,C10orf67 +256824,LOC256824 +256892,OR51F1 +2569,GABRR1 +256933,NPB +256949,KANK3 +256957,HEATR9 +256979,SUN3 +256987,SERINC5 +257,ALX3 +2570,GABRR2 +257019,FRMD3 +257044,C1orf101 +257062,CATSPERD +257068,PLCXD2 +2571,GAD1 +257101,ZNF683 +257106,ARHGAP30 +257144,GCSAM +257152,LOC257152 +257160,RNF214 +257169,C9orf43 +257177,CFAP126 +257194,NEGR1 +2572,GAD2 +257202,GPX6 +257218,SHPRH +257236,CCDC96 +257240,KLHL34 +257313,UTS2B +257364,SNX33 +257397,TAB3 +2574,GAGE2C +257407,C2orf72 +257415,FAM133B +2575,GAGE3 +25758,KIAA1549L +25759,SHC2 +2576,GAGE4 +257629,ANKS4B +25763,HYPM +25764,HYPK +25766,PRPF40B +25769,SLC24A2 +2577,GAGE5 +25770,C22orf31 +25771,TBC1D22A +25775,C22orf24 +25776,CBY1 +25777,SUN2 +25778,DSTYK +2578,GAGE6 +25780,RASGRP3 +25782,RAB3GAP2 +25788,RAD54B +25789,TMEM59L +2579,GAGE7 +25790,CFAP45 +25791,NGEF +25792,CIZ1 +25793,FBXO7 +25794,FSCN2 +25796,PGLS +25797,QPCT +25798,BRI3 +25799,ZNF324 +258,AMBN +2580,GAK +25800,SLC39A6 +25801,GCA +258010,SVIP +25802,LMOD1 +25803,SPDEF +25804,LSM4 +25805,BAMBI +25806,VAX2 +25807,RHBDD3 +25809,TTLL1 +2581,GALC +25813,SAMM50 +25814,ATXN10 +25816,TNFAIP8 +25817,FAM19A5 +25818,KLK5 +25819,CCRN4L +2582,GALE +25820,ARIH1 +25821,MTO1 +25822,DNAJB5 +25823,TPSG1 +25824,PRDX5 +25825,BACE2 +25827,FBXL2 +25828,TXN2 +25829,TMEM184B +2583,B4GALNT1 +25830,SULT4A1 +25831,HECTD1 +25832,NBPF14 +25833,POU2F3 +25834,MGAT4C +25836,NIPBL +25837,RAB26 +25839,COG4 +2584,GALK1 +25840,METTL7A +25841,ABTB2 +25842,ASF1A +25843,MOB4 +25844,YIPF3 +25847,ANAPC13 +25849,PARM1 +2585,GALK2 +25850,ZNF345 +25851,TECPR1 +25852,ARMC8 +25853,DCAF12 +25854,FAM149A +25855,BRMS1 +25858,TEX40 +25861,DFNB31 +25862,USP49 +25864,ABHD14A +25865,PRKD2 +2587,GALR1 +25870,SUMF2 +25871,C3orf17 +25873,RPL36 +25874,MPC2 +25875,LETMD1 +25876,SPEF1 +25878,MXRA5 +25879,DCAF13 +2588,GALNS +25880,TMEM186 +25884,CHRDL2 +25885,POLR1A +25886,POC1A +25888,ZNF473 +2589,GALNT1 +25890,ABI3BP +25891,PAMR1 +25893,TRIM58 +25894,PLEKHG4 +25895,METTL21B +25896,INTS7 +25897,RNF19A +25898,RCHY1 +259,AMBP +2590,GALNT2 +25900,IFFO1 +25901,CCDC28A +25902,MTHFD1L +25903,OLFML2B +25904,CNOT10 +25906,ANAPC15 +25907,TMEM158 +25909,AHCTF1 +2591,GALNT3 +25911,DPCD +25912,C1orf43 +25913,POT1 +25914,RTTN +25915,NDUFAF3 +25917,THUMPD3 +259173,ALS2CL +259197,NCR3 +2592,GALT +25920,NELFB +25921,ZDHHC5 +259215,LY6G6F +259217,HSPA12A +25923,ATL3 +259230,SGMS1 +259232,NALCN +259236,TMIE +259239,WFDC11 +25924,MYRIP +259240,WFDC9 +259249,MRGPRX1 +25925,ZNF521 +25926,NOL11 +259266,ASPM +25927,CNRIP1 +25928,SOSTDC1 +259282,BOD1L1 +259285,TAS2R39 +259286,TAS2R40 +259287,TAS2R41 +259289,TAS2R43 +25929,GEMIN5 +259290,TAS2R31 +259291,TAS2R45 +259292,TAS2R46 +259293,TAS2R30 +259294,TAS2R19 +259295,TAS2R20 +259296,TAS2R50 +2593,GAMT +25930,PTPN23 +259307,IL4I1 +259308,FAM205A +25932,CLIC4 +25934,NIPSNAP3A +25936,NSL1 +25937,WWTR1 +25938,HEATR5A +25939,SAMHD1 +25940,FAM98A +25941,TPGS2 +25942,SIN3A +25943,C20orf194 +25945,PVRL3 +25946,ZNF385A +25948,KBTBD2 +25949,SYF2 +2595,GANC +25950,RWDD3 +25953,PNKD +25956,SEC31B +25957,PNISR +25959,KANK2 +2596,GAP43 +25960,ADGRA2 +25961,NUDT13 +25962,KIAA1429 +25963,TMEM87A +25966,C2CD2 +2597,GAPDH +25970,SH2B1 +25972,UNC50 +25973,PARS2 +25974,MMACHC +25975,EGFL6 +25976,TIPARP +25977,NECAP1 +25978,CHMP2B +25979,DHRS7B +25980,AAR2 +25981,DNAH1 +25983,NGDN +25984,KRT23 +25987,TSKU +25988,HINFP +25989,ULK3 +25992,SNED1 +25994,HIGD1A +25996,REXO2 +25998,IBTK +25999,CLIP3 +26,AOC1 +26000,TBC1D10B +26001,RNF167 +26002,MOXD1 +26003,GORASP2 +26005,C2CD3 +26007,TKFC +26009,ZZZ3 +26010,SPATS2L +26011,TENM4 +26012,NSMF +26013,L3MBTL1 +26015,RPAP1 +26017,FAM32A +26018,LRIG1 +26019,UPF2 +26020,LRP10 +26022,TMEM98 +26024,PTCD1 +26025,PCDHGA12 +26027,ACOT11 +260293,CYP4X1 +26030,PLEKHG3 +26031,OSBPL3 +26032,SUSD5 +26033,ATRNL1 +26034,IPCEF1 +26035,GLCE +26036,ZNF451 +26037,SIPA1L1 +26038,CHD5 +26039,SS18L1 +26040,SETBP1 +260404,LOC260404 +260425,MAGI3 +260429,PRSS33 +26043,UBXN7 +260434,PYDC1 +260436,FDCSP +26045,LRRTM2 +26046,LTN1 +26047,CNTNAP2 +26048,ZNF500 +26049,FAM169A +26050,SLITRK5 +26051,PPP1R16B +26052,DNM3 +26053,AUTS2 +26054,SENP6 +26056,RAB11FIP5 +26057,ANKRD17 +26058,GIGYF2 +26059,ERC2 +26060,APPL1 +26061,HACL1 +26063,DECR2 +26064,RAI14 +26065,LSM14A +26069,DKFZP586B0319 +26071,FAM127B +26073,POLDIP2 +26074,CFAP61 +26083,TBC1D29 +26084,ARHGEF26 +26085,KLK13 +26086,GPSM1 +26088,GGA1 +26090,ABHD12 +26091,HERC4 +26092,TOR1AIP1 +26093,CCDC9 +26094,DCAF4 +26095,PTPN20 +26097,CHTOP +26098,EDRF1 +26099,SZRD1 +26100,WIPI2 +26101,DKFZP564M1462 +26103,LRIT1 +26105,DKFZP434C153 +26106,DKFZP586K1520 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+2624,GATA2 +26240,FAM50B +26245,OR2M4 +26246,OR2L2 +26248,OR2K2 +26249,KLHL3 +2625,GATA3 +26251,KCNG2 +26253,CLEC4E +26254,OPTC +26256,CABYR +26257,NKX2-8 +26258,BLOC1S6 +26259,FBXW8 +2626,GATA4 +26260,FBXO25 +26261,FBXO24 +26262,TSPAN17 +26263,FBXO22 +26266,SLC13A4 +26267,FBXO10 +26268,FBXO9 +26269,FBXO8 +2627,GATA6 +26270,FBXO6 +26271,FBXO5 +26272,FBXO4 +26273,FBXO3 +26275,HIBCH +26276,VPS33B +26277,TINF2 +26278,SACS +26279,PLA2G2D +2628,GATM +26280,IL1RAPL2 +26281,FGF20 +26284,ERAL1 +26285,CLDN17 +26286,ARFGAP3 +26287,ANKRD2 +26289,AK5 +2629,GBA +26290,GALNT8 +26291,FGF21 +26292,MYCBP +26297,SERGEF +26298,EHF +26301,GBGT1 +2631,GBAS +2632,GBE1 +2633,GBP1 +26330,GAPDHS +26333,OR7A17 +26338,OR5L2 +26339,OR5K1 +2634,GBP2 +26341,OR5H1 +2635,GBP3 +26353,HSPB8 +26354,GNL3 +26355,FAM162A +2636,GBX1 +2637,GBX2 +2638,GC +2639,GCDH +2641,GCG +2642,GCGR +2643,GCH1 +2644,GCHFR +2645,GCK +2646,GCKR +26468,LHX6 +26469,PTPN18 +2647,BLOC1S1 +26470,SEZ6L2 +26471,NUPR1 +26472,PPP1R14B +26476,OR10J1 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+266740,MAGEA2B +266743,NPAS4 +266747,RGL4 +2668,GDNF +266811,NPSA +266812,NAP1L5 +26682,OR4F4 +26683,OR4F3 +26686,OR4E2 +26689,OR4D1 +2669,GEM +266918,D21S2090E +26692,OR2W1 +26693,OR2V1 +26696,OR2T1 +266977,ADGRF1 +267,AMFR +2670,GFAP +267002,PGBD2 +267004,PGBD3 +267012,DAOA +267020,ATP5L2 +26707,OR2J2 +2671,GFER +26716,OR2H1 +2672,GFI1 +2673,GFPT1 +26735,OR1L3 +26737,OR1L1 +2674,GFRA1 +26740,OR1J2 +26747,NUFIP1 +26748,GAGE12I +26749,GAGE2E +2675,GFRA2 +26750,RPS6KC1 +26751,SH3YL1 +2676,GFRA3 +26762,HAVCR1 +2677,GGCX +2678,GGT1 +268,AMH +2683,B4GALT1 +2686,GGT7 +2687,GGT5 +26872,STEAP1 +26873,OPLAH +2688,GH1 +2689,GH2 +269,AMHR2 +2690,GHR +2691,GHRH +2692,GHRHR +2693,GHSR +2694,GIF +2695,GIP +26952,SMR3A +26953,RANBP6 +26958,COPG2 +26959,HBP1 +2696,GIPR +26960,NBEA +2697,GJA1 +26973,CHORDC1 +26974,ZNF285 +26984,SEC22A +26985,AP3M1 +26986,PABPC1 +26993,AKAP8L +26994,RNF11 +26995,TRUB2 +26996,GPR160 +26998,FETUB +26999,CYFIP2 +27,ABL2 +270,AMPD1 +2700,GJA3 +27000,DNAJC2 +27005,USP21 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+27291,R3HCC1L +27292,DIMT1 +27293,SMPDL3B +27294,DHDH +27295,PDLIM3 +27296,TP53TG5 +27297,CRCP +27299,ADAMDEC1 +273,AMPH +2730,GCLM +27300,ZNF544 +27301,APEX2 +27302,BMP10 +27303,RBMS3 +27304,MOCS3 +27306,HPGDS +27309,ZNF330 +2731,GLDC +27314,RAB30 +27315,PGAP2 +27316,RBMX +27319,BHLHE22 +27324,TOX3 +27327,TNRC6A +27328,PCDH11X +27329,ANGPTL3 +2733,GLE1 +27330,RPS6KA6 +27332,ZNF638 +27333,GOLIM4 +27334,P2RY10 +27335,EIF3K +27336,HTATSF1 +27338,UBE2S +27339,PRPF19 +2734,GLG1 +27340,UTP20 +27341,RRP7A +27342,RABGEF1 +27343,POLL +27344,PCSK1N +27345,KCNMB4 +27346,TMEM97 +27347,STK39 +27348,TOR1B +27349,MCAT +2735,GLI1 +27350,APOBEC3C +27351,DESI1 +27352,SGSM3 +2736,GLI2 +2737,GLI3 +2738,GLI4 +2739,GLO1 +274,BIN1 +2740,GLP1R +2741,GLRA1 +2742,GLRA2 +27429,HTRA2 +2743,GLRB +27430,MAT2B +27433,TOR2A +27434,POLM +27436,EML4 +27439,CECR6 +2744,GLS +27440,CECR5 +27443,CECR2 +27445,PCLO +2745,GLRX +2746,GLUD1 +2747,GLUD2 +275,AMT +2752,GLUL +276,AMY1A +2760,GM2A +2762,GMDS +2763,GMFA +2764,GMFB 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+282974,STK32C +282991,BLOC1S2 +282996,RBM20 +283,ANG +2830,GPR6 +283075,LOC283075 +283078,MKX +283080,C10orf126 +283092,OR4C13 +283093,OR4C12 +2831,NPBWR1 +283106,CSNK2A3 +283111,OR51V1 +283112,LOC283112 +283116,TRIM49B +283129,C11orf85 +283130,SLC25A45 +283149,BCL9L +283150,FOXR1 +283152,CCDC153 +283159,OR8D1 +28316,CDH20 +283160,OR8D2 +283162,OR8B4 +283171,C11orf44 +283189,OR9G4 +2832,NPBWR2 +283208,P4HA3 +283209,PGM2L1 +283212,KLHL35 +283219,KCTD21 +283229,CRACR2B +283232,TMEM80 +283234,CCDC88B +283237,TTC9C +283238,SLC22A24 +283248,RCOR2 +283254,HARBI1 +283270,LOC283270 +283278,LOC283278 +283284,IGSF22 +283297,OR10A4 +283298,OLFML1 +2833,CXCR3 +283310,OTOGL +283316,CD163L1 +283337,ZNF740 +283349,RASSF3 +283357,LOC283357 +283358,B4GALNT3 +283365,OR6C6 +283372,FLJ25613 +283373,ANKRD52 +283375,SLC39A5 +283377,SPRYD4 +283383,ADGRD1 +283385,MORN3 +2834,PRLHR +283403,C12orf80 +283417,DPY19L2 +283420,CLEC9A +283431,GAS2L3 +283446,MYO1H +283450,HECTD4 +283454,LOC283454 +283455,KSR2 +283459,GATC +283461,C12orf40 +283463,MUC19 +283464,GXYLT1 +283471,TMPRSS12 +283475,LOC283475 +283484,LOC283484 +283485,LOC283485 +283489,CHAMP1 +2835,GPR12 +283514,SIAH3 +283516,LOC283516 +283518,KCNRG +283537,SLC46A3 +283554,GPR137C +283571,PROX2 +283576,ZDHHC22 +283578,TMED8 +283579,C14orf178 +283598,C14orf177 +283600,SLC25A47 +283629,TSSK4 +283635,FAM177A1 +283638,CEP170B +283643,C14orf80 +283652,SLC24A5 +283659,PRTG +283665,LOC283665 +283674,LOC283674 +283677,REC114 +283685,GOLGA6L2 +283694,OR4N4 +2837,UTS2R +283710,LOC283710 +283713,LOC283713 +283726,SAXO2 +283728,LOC283728 +283737,LOC283737 +283742,FAM98B +283745,LOC283745 +283748,PLA2G4D +283767,GOLGA6L1 +283777,FAM169B +2838,GPR15 +283807,FBXL22 +283820,NOMO2 +283847,CCDC79 +283848,CES4A +283849,EXOC3L1 +283869,NPW +283870,BRICD5 +283871,PGP +283897,C16orf54 +283899,INO80E +283911,LOC283911 +283927,NUDT7 +283933,ZNF843 +283948,NHLRC4 +283951,C16orf91 +283953,TMEM114 +283971,CLEC18C +283985,FADS6 +283987,HID1 +283989,TSEN54 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+284369,SIGLECL1 +284370,ZNF615 +284371,ZNF841 +284382,ACTL9 +284383,OR2Z1 +284390,ZNF763 +284391,ZNF844 +2844,GPR21 +284402,SCGB2B2 +284403,WDR62 +284406,ZFP82 +284415,VSTM1 +284417,TMEM150B +284418,FAM71E2 +284422,SMIM24 +284427,SLC25A41 +284428,MBD3L5 +284433,OR10H5 +284434,NWD1 +284439,SLC25A42 +284443,ZNF493 +284451,ODF3L2 +284459,HKR1 +284467,FAM19A3 +284485,RIIAD1 +284486,THEM5 +284498,C1orf167 +2845,GPR22 +284513,LOC284513 +284521,OR2L13 +284525,SLC9C2 +284532,OR14A16 +284541,CYP4A22 +284546,C1orf185 +284565,NBPF15 +284570,LOC284570 +2846,LPAR4 +284611,FAM102B +284612,SYPL2 +284613,CYB561D1 +284615,ANKRD34A +284618,RUSC1-AS1 +284630,LOC284630 +284654,RSPO1 +284656,EPHA10 +284669,LOC284669 +284677,C1orf204 +284680,C1orf111 +284695,ZNF326 +284697,BTBD8 +2847,MCHR1 +284716,RIMKLA +284723,SLC25A34 +284756,C20orf197 +284759,SIRPB2 +2848,GPR25 +284805,C20orf203 +284827,KRTAP13-4 +2849,GPR26 +284904,SEC14L4 +284948,SH2D6 +284958,NT5DC4 +284967,bA395L14.13 +284992,CCDC150 +284996,RNF149 +285,ANGPT2 +2850,GPR27 +285016,FAM150B +285025,CCDC141 +285051,C2orf61 +285093,RTP5 +285095,LOC285095 +28511,NKIRAS2 +28512,NKIRAS1 +285126,DNAJC5G +28513,CDH19 +28514,DLL1 +285141,ERICH2 +285148,IAH1 +285172,FAM126B +285173,LOC285173 +285175,UNC80 +285178,LOC285178 +285180,RUFY4 +285181,LOC285181 +285190,RGPD4 +285193,DUSP28 +285195,SLC9A9 +2852,GPER1 +285203,EOGT +285220,EPHA6 +285231,FBXW12 +285237,C3orf38 +285242,HTR3E +285267,ZNF619 +285268,ZNF621 +285282,RABL3 +285299,LOC285299 +2853,GPR31 +285311,C3orf56 +285313,IGSF10 +285315,C3orf33 +285331,CCDC66 +285335,SLC9C1 +285343,TCAIM +285346,ZNF852 +285349,ZNF660 +285362,SUMF1 +285367,RPUSD3 +285368,PRRT3 +285378,LOC285378 +285381,DPH3 +285382,C3orf70 +285386,TPRG1 +2854,GPR32 +285423,LOC285423 +285429,DCAF4L1 +285440,CYP4V2 +285464,CRIPAK +285489,DOK7 +285498,RNF212 +285500,LOC285500 +285513,GPRIN3 +285521,COX18 +285525,YIPF7 +285527,FRYL +285533,RNF175 +285550,FAM200B +285555,STPG2 +285556,LOC285556 +285588,EFCAB9 +285590,SH3PXD2B +285596,FAM153A +285598,ARL10 +2856,GPR33 +285600,KIAA0825 +285601,GPR150 +285605,DTWD2 +285613,RELL2 +285628,LOC285628 +285636,C5orf51 +285641,SLC36A3 +285643,KIF4B +285659,OR2V2 +285668,C5orf64 +285671,RNF180 +285672,SREK1IP1 +285676,ZNF454 +285679,C5orf60 +285690,LOC285690 +2857,GPR34 +285704,RGMB +285736,FLJ35700 +285753,CEP57L1 +285755,PPIL6 +285761,DCBLD1 +285782,CAGE1 +285800,PRR18 +285812,LOC285812 +285835,LOC285835 +285848,PNPLA1 +285852,TREML4 +285855,RPL7L1 +285877,POM121L12 +285888,CNPY1 +2859,GPR35 +285941,C7orf71 +285955,SPDYE1 +285957,LOC285957 +285966,TCAF2 +285971,ZNF775 +285973,ATG9B +285989,ZNF789 +286,ANK1 +2860,GPR36 +286006,LSMEM1 +286046,XKR6 +286052,LOC286052 +286053,NSMCE2 +286058,LOC286058 +286063,LOC286063 +286068,LOC286068 +286071,LOC286071 +286075,ZNF707 +286077,FAM83H +286087,LOC286087 +286097,MICU3 +2861,GPR37 +286109,CASC7 +286121,LOC286121 +286122,C8orf31 +286128,ZFP41 +286133,SCARA5 +286144,TRIQK +286148,DPY19L4 +286151,FBXO43 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+317,APAF1 +3170,FOXA2 +3171,FOXA3 +3172,HNF4A +3174,HNF4G +3175,ONECUT1 +3176,HNMT +317647,FLJ11857 +317649,EIF4E3 +317662,FAM149B1 +317671,RFESD +3177,SLC29A2 +317701,VN1R2 +317703,VN1R4 +317705,VN1R5 +317719,KLHL10 +317749,DHRS4L2 +317754,POTED +317761,C14orf39 +317762,CCDC85C +317772,HIST2H2AB +317781,DDX51 +3178,HNRNPA1 +318,NUDT2 +3181,HNRNPA2B1 +3182,HNRNPAB +3183,HNRNPC +3184,HNRNPD +3185,HNRNPF +3187,HNRNPH1 +3188,HNRNPH2 +3189,HNRNPH3 +319,APOF +3190,HNRNPK +319089,TTC6 +3191,HNRNPL +319100,TAAR6 +319101,KRT73 +3192,HNRNPU +3195,TLX1 +3196,TLX2 +3198,HOXA1 +3199,HOXA2 +32,ACACB +320,APBA1 +3200,HOXA3 +3201,HOXA4 +3202,HOXA5 +3203,HOXA6 +3204,HOXA7 +3205,HOXA9 +3206,HOXA10 +3207,HOXA11 +3208,HPCA +3209,HOXA13 +321,APBA2 +3211,HOXB1 +3212,HOXB2 +3213,HOXB3 +3214,HOXB4 +3215,HOXB5 +3216,HOXB6 +3217,HOXB7 +3218,HOXB8 +3219,HOXB9 +322,APBB1 +3221,HOXC4 +3222,HOXC5 +3223,HOXC6 +3224,HOXC8 +3225,HOXC9 +3226,HOXC10 +3227,HOXC11 +3228,HOXC12 +3229,HOXC13 +323,APBB2 +3231,HOXD1 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+345193,LRIT3 +3452,IFNA21 +345222,MSANTD1 +345274,SLC10A6 +345275,HSD17B13 +3454,IFNAR1 +345456,PFN3 +345462,ZNF879 +3455,IFNAR2 +345557,PLCXD3 +3456,IFNB1 +345611,IRGM +345643,MCIDAS +345651,ACTBL2 +345757,FAM174A +345778,MTX3 +3458,IFNG +345895,RSPH4A +3459,IFNGR1 +345930,ECT2L +346,APOC4 +3460,IFNGR2 +346007,EYS +346157,ZNF391 +346171,ZFP57 +346288,SEPT14 +346389,MACC1 +346517,OR6V1 +346525,OR2A12 +346528,OR2A1 +346562,GNAT3 +346606,MOGAT3 +346653,FAM71F2 +346673,STRA8 +346689,KLRG2 +3467,IFNW1 +346702,PRSS51 +347,APOD +347051,SLC10A5 +347088,ADGRD2 +347148,QRFP +347168,OR1J1 +347169,OR1B1 +347240,KIF24 +347252,IGFBPL1 +347273,MURC +347344,ZNF81 +347365,ITIH6 +347404,LANCL3 +347411,MPC1L +347442,DCAF8L2 +347454,SOWAHD +347468,OR13H1 +347475,CCDC160 +347487,CXorf66 +3475,IFRD1 +347516,DGAT2L6 +347517,RAB41 +347527,ARSH +347541,MAGEB5 +3476,IGBP1 +347688,TUBB8 +347715,LOC347715 +347730,LRRTM1 +347731,LRRTM3 +347732,CATSPER3 +347733,TUBB2B +347734,SLC35B2 +347735,SERINC2 +347736,NME9 +347741,OTOP3 +347744,C6orf52 +347853,TBX10 +347862,PDDC1 +3479,IGF1 +347902,AMIGO2 +348,APOE +3480,IGF1R +348013,TMEM255B +348040,LOC348040 +348093,RBPMS2 +348094,ANKDD1A +3481,IGF2 +348110,ARPIN +348158,ACSM2B +348162,LOC348162 +348174,CLEC18A +348180,CTU2 +3482,IGF2R +348235,SKA2 +348262,FAM195B +3483,IGFALS +348303,SELV +348327,ZNF530 +348378,FAM159A +3484,IGFBP1 +348487,FAM131C +3485,IGFBP2 +3486,IGFBP3 +348645,C22orf34 +348654,GEN1 +3487,IGFBP4 +348738,C2orf48 +348793,WDR53 +3488,IGFBP5 +348801,LNP1 +348807,CCDC37 +3489,IGFBP6 +348932,SLC6A18 +348938,NIPAL4 +348980,HCN1 +348995,NUP43 +3490,IGFBP7 +349075,ZNF713 +3491,CYR61 +349136,WDR86 +349149,GJC3 +3492,IGH +349334,FOXD4L4 +349565,NMNAT3 +349633,PLET1 +349667,RTN4RL2 +35,ACADS +350,APOH +350383,GPR142 +3508,IGHMBP2 +351,APP +3512,JCHAIN +3516,RBPJ +352909,DNAAF3 +352954,GATS +352999,C6orf58 +353,APRT +353088,ZNF429 +353091,RAET1G +353116,RILPL1 +353131,LCE1A +353132,LCE1B +353133,LCE1C +353134,LCE1D +353135,LCE1E +353137,LCE1F +353138,LEP7 +353139,LCE2A +353140,LCE2C +353141,LCE2D +353142,LCE3A +353143,LCE3B +353144,LCE3C +353145,LCE3E +353149,TBC1D26 +353164,TAS2R42 +353174,ZACN +353189,SLCO4C1 +353219,KAAG1 +353238,PADI6 +353274,ZNF445 +353288,KRT26 +353299,RGSL1 +353322,ANKRD37 +353323,KRTAP12-2 +353324,SPATA12 +353332,KRTAP12-1 +353333,KRTAP10-10 +353345,GPR141 +353355,ZNF233 +353376,TICAM2 +353497,POLN +3535,IGL +353500,BMP8A +353513,VCY1B +353514,LILRA5 +353515,XKRY2 +354,KLK3 +3543,IGLL1 +3547,IGSF1 +3549,IHH +355,FAS +3550,IK +3551,IKBKB +3552,IL1A +3553,IL1B +3554,IL1R1 +3556,IL1RAP +3557,IL1RN +3558,IL2 +3559,IL2RA +356,FASLG +3560,IL2RB +3561,IL2RG +3562,IL3 +3563,IL3RA +3565,IL4 +3566,IL4R +3567,IL5 +3568,IL5RA +3569,IL6 +357,SHROOM2 +3570,IL6R +3572,IL6ST +3574,IL7 +3575,IL7R +3576,CXCL8 +3577,CXCR1 +3578,IL9 +3579,CXCR2 +358,AQP1 +3581,IL9R +3586,IL10 +3587,IL10RA +3588,IL10RB +3589,IL11 +359,AQP2 +3590,IL11RA +3592,IL12A +3593,IL12B +3594,IL12RB1 +3595,IL12RB2 +3596,IL13 +3597,IL13RA1 +359710,BPIFB3 +359787,DPPA3 +3598,IL13RA2 +359845,FAM101B +359948,IRF2BP2 +36,ACADSB +360,AQP3 +3600,IL15 +360023,ZBTB41 +360030,NANOGNB +3601,IL15RA +360200,TMPRSS9 +360203,GLT6D1 +360205,PRAC2 +360226,PRSS41 +3603,IL16 +3604,TNFRSF9 +3605,IL17A +3606,IL18 +3607,FOXK2 +3608,ILF2 +3609,ILF3 +361,AQP4 +3611,ILK +3612,IMPA1 +3613,IMPA2 +3614,IMPDH1 +3615,IMPDH2 +3617,IMPG1 +3619,INCENP +362,AQP5 +3620,IDO1 +3621,ING1 +3622,ING2 +3623,INHA +3624,INHBA +3625,INHBB +3626,INHBC +3627,CXCL10 +3628,INPP1 +363,AQP6 +3630,INS +3631,INPP4A +3632,INPP5A +3633,INPP5B +3635,INPP5D +3636,INPPL1 +3638,INSIG1 +364,AQP7 +3640,INSL3 +3641,INSL4 +3642,INSM1 +3643,INSR +3645,INSRR +3646,EIF3E +3651,PDX1 +3652,IPP +3654,IRAK1 +3655,ITGA6 +3656,IRAK2 +3658,IREB2 +3659,IRF1 +366,AQP9 +3660,IRF2 +3661,IRF3 +3662,IRF4 +3663,IRF5 +3664,IRF6 +3665,IRF7 +3667,IRS1 +3669,ISG20 +367,AR +3670,ISL1 +3671,ISLR +3672,ITGA1 +3673,ITGA2 +3674,ITGA2B +3675,ITGA3 +3676,ITGA4 +3678,ITGA5 +3679,ITGA7 +368,ABCC6 +3680,ITGA9 +3681,ITGAD +3682,ITGAE +3683,ITGAL +3684,ITGAM +3685,ITGAV +3687,ITGAX +3688,ITGB1 +3689,ITGB2 +369,ARAF +3690,ITGB3 +3691,ITGB4 +3692,EIF6 +3693,ITGB5 +3694,ITGB6 +3695,ITGB7 +3696,ITGB8 +3697,ITIH1 +3698,ITIH2 +3699,ITIH3 +37,ACADVL +3700,ITIH4 +3702,ITK +3703,STT3A +3704,ITPA +3705,ITPK1 +3706,ITPKA +3707,ITPKB +3708,ITPR1 +3709,ITPR2 +3710,ITPR3 +3712,IVD +3713,IVL +3714,JAG2 +3716,JAK1 +3717,JAK2 +3718,JAK3 +372,ARCN1 +3720,JARID2 +3725,JUN +3726,JUNB +3727,JUND +3728,JUP +373,TRIM23 +3730,ANOS1 +373156,GSTK1 +3732,CD82 +3735,KARS +373509,USP50 +3736,KCNA1 +3737,KCNA2 +3738,KCNA3 +373856,USP41 +373863,DND1 +3739,KCNA4 +374,AREG +3741,KCNA5 +3742,KCNA6 +374286,CDRT1 +374291,NDUFS7 +3743,KCNA7 +374308,PTCHD3 +374354,NHLRC2 +374355,CCDC172 +374378,GALNT18 +374383,NCR3LG1 +374393,FAM111B +374395,TMEM179B +3744,KCNA10 +374403,TBC1D10C +374407,DNAJB13 +374454,KRT77 +374462,PTPRQ +374470,C12orf42 +3745,KCNB1 +374569,ASPG +3746,KCNC1 +374618,TEX9 +374654,KIF7 +374655,ZNF710 +374659,HDDC3 +3747,KCNC2 +374739,TEPP +374768,SPEM1 +374786,EFCAB5 +3748,KCNC3 +374819,LRRC37A3 +374860,ANKRD30B +374864,CCDC178 +374868,ATP9B +374872,C19orf35 +374875,HSD11B1L +374877,C19orf45 +374879,ZNF699 +374882,TMEM205 +374887,YJEFN3 +374897,SBSN +374899,ZNF829 +3749,KCNC4 +374900,ZNF568 +374907,B3GNT8 +374918,IGFL1 +374920,C19orf68 +374928,ZNF773 +374946,DRAXIN +374955,SPATA21 +374969,CCDC23 +374973,TEX38 +374977,MROH7 +374986,FAM73A +375,ARF1 +3750,KCND1 +375033,PEAR1 +375035,SFT2D2 +375056,MIA3 +375057,C1orf95 +375061,FAM89A +3751,KCND2 +375189,PFN4 +375190,FAM228B +3752,KCND3 +375248,ANKRD36 +375287,RBM43 +375298,CERKL +3753,KCNE1 +375307,CATIP +375316,RBM44 +375318,AQP12A +375323,LHFPL4 +375337,TOPAZ1 +375341,C3orf62 +375346,TMEM110 +375387,NRROS +3754,KCNF1 +375444,C5orf34 +375449,MAST4 +375484,SIMC1 +3755,KCNG1 +375519,GJB7 +375567,VWC2 +375593,TRIM73 +3756,KCNH1 +375607,NAT16 +375611,SLC26A5 +375612,LHFPL3 +375616,KCP +375686,SPATC1 +3757,KCNH2 +375704,ENHO +375743,PTAR1 +375748,ERCC6L2 +375757,SWI5 +375759,C9orf50 +375775,PNPLA7 +375790,AGRN +375791,CYSRT1 +3758,KCNJ1 +3759,KCNJ2 +3760,KCNJ3 +3761,KCNJ4 +376132,LRRC10 +3762,KCNJ5 +376267,RAB15 +3763,KCNJ6 +3764,KCNJ8 +376497,SLC27A1 +3765,KCNJ9 +3766,KCNJ10 +3767,KCNJ11 +3768,KCNJ12 +3769,KCNJ13 +376940,ZC3H6 +377,ARF3 +3770,KCNJ14 +377007,KLHL30 +377047,PRSS45 +3772,KCNJ15 +3773,KCNJ16 +3775,KCNK1 +3776,KCNK2 +377630,USP17L2 +377677,CA13 +3777,KCNK3 +3778,KCNMA1 +377841,ENTPD8 +3779,KCNMB1 +378,ARF4 +3780,KCNN1 +3781,KCNN2 +378108,TRIM74 +3782,KCNN3 +3783,KCNN4 +3784,KCNQ1 +3785,KCNQ2 +3786,KCNQ3 +3787,KCNS1 +378708,APITD1 +3788,KCNS2 +378807,CATSPER4 +378884,NHLRC1 +378925,RNF148 +378948,RBMY1B +378949,RBMY1D +378950,RBMY1E +378951,RBMY1J +379,ARL4D +3790,KCNS3 +3791,KDR +3792,KEL +3795,KHK +3796,KIF2A +3797,KIF3C +3798,KIF5A +3799,KIF5B +38,ACAT1 +3800,KIF5C +3801,KIFC3 +3802,KIR2DL1 +3803,KIR2DL2 +3804,KIR2DL3 +3805,KIR2DL4 +3806,KIR2DS1 +3808,KIR2DS3 +3809,KIR2DS4 +381,ARF5 +3810,KIR2DS5 +3811,KIR3DL1 +3812,KIR3DL2 +3813,KIR3DS1 +3814,KISS1 +3815,KIT +3816,KLK1 +3817,KLK2 +3818,KLKB1 +382,ARF6 +3820,KLRB1 +3821,KLRC1 +3822,KLRC2 +3823,KLRC3 +3824,KLRD1 +3827,KNG1 +383,ARG1 +3831,KLC1 +3832,KIF11 +3833,KIFC1 +3834,KIF25 +3835,KIF22 +3836,KPNA1 +3837,KPNB1 +3838,KPNA2 +3839,KPNA3 +384,ARG2 +3840,KPNA4 +3841,KPNA5 +3842,TNPO1 +3843,IPO5 +3845,KRAS +3846,KRTAP5-9 +3848,KRT1 +3849,KRT2 +3850,KRT3 +3851,KRT4 +3852,KRT5 +3853,KRT6A +3854,KRT6B +3855,KRT7 +3856,KRT8 +3857,KRT9 +3858,KRT10 +3859,KRT12 +3860,KRT13 +3861,KRT14 +3866,KRT15 +386617,KCTD8 +386618,KCTD4 +386653,IL31 +386672,KRTAP10-4 +386674,KRTAP10-6 +386675,KRTAP10-7 +386676,KRTAP10-9 +386677,KRTAP10-1 +386678,KRTAP10-11 +386679,KRTAP10-2 +386680,KRTAP10-5 +386681,KRTAP10-8 +386682,KRTAP10-3 +386683,KRTAP12-3 +386684,KRTAP12-4 +386685,KRTAP10-12 +386724,AMIGO3 +386746,MRGPRG +3868,KRT16 +387,RHOA +387032,ZKSCAN4 +387082,SUMO4 +387103,CENPW +387104,SOGA3 +387119,CEP85L +387129,NPSR1 +3872,KRT17 +387263,C6orf120 +387264,KRTAP5-1 +387266,KRTAP5-3 +387267,KRTAP5-4 +387273,KRTAP5-10 +387332,TBPL2 +387338,NSUN4 +387357,THEMIS +387496,RASL11A +3875,KRT18 +387509,GPR153 +387521,TMEM189 +387522,TMEM189-UBE2V1 +387597,ILDR2 +387601,SLC22A25 +387638,C10orf113 +387640,SKIDA1 +387680,FAM21A +387694,SH2D4B +387695,C10orf99 +387700,SLC16A12 +387707,CC2D2B +387712,ENO4 +387715,ARMS2 +387718,TEX36 +387733,IFITM5 +387748,OR56B1 +387755,INSC +387758,FIBIN +387763,C11orf96 +387775,SLC22A10 +387778,SPDYC +387787,LIPT2 +387804,VSTM5 +387836,CLEC2A +387837,CLEC12B +387849,REP15 +387856,CCDC184 +387882,C12orf75 +387885,CCDC42B +387890,TMEM233 +387893,SETD8 +387911,C1QTNF9B +387914,SHISA2 +387921,NHLRC3 +387923,SERP2 +387990,TOMM20L +388,RHOB +3880,KRT19 +388015,RTL1 +388021,TMEM179 +3881,KRT31 +388115,C15orf52 +388121,TNFAIP8L3 +388125,C2CD4B +388135,C15orf59 +388199,PRR25 +3882,KRT32 +388228,SBK1 +388272,C16orf87 +388276,C16orf97 +388282,LOC388282 +388284,C16orf86 +388289,C16orf47 +3883,KRT33A +388323,GLTPD2 +388324,INCA1 +388325,SCIMP +388327,C17orf100 +388333,SPDYE4 +388335,TMEM220 +388336,SHISA6 +388341,LRRC75A +388364,TMIGD1 +388372,CCL4L1 +388381,C17orf98 +388389,CCDC103 +388394,RPRML +3884,KRT33B +388403,YPEL2 +388407,C17orf82 +388419,BTBD17 +388436,LOC388436 +388439,FLJ12120 +388468,POTEC +3885,KRT34 +388512,CLEC17A +388523,ZNF728 +388531,RGS9BP +388533,KRTDAP +388536,ZNF790 +388551,CEACAM16 +388552,BLOC1S3 +388553,BHMG1 +388555,IGFL3 +388558,ZNF808 +388559,ZNF888 +388561,ZNF761 +388564,TMEM238 +388566,ZNF470 +388567,ZNF749 +388569,ZNF324B +388581,FAM132A +388585,HES5 +388588,SMIM1 +388591,RNF207 +388595,TMEM82 +3886,KRT35 +388610,TRNP1 +388611,CD164L2 +388630,TRABD2B +388633,LDLRAD1 +388646,GBP7 +388649,C1orf146 +388650,FAM69A +388662,SLC6A17 +388667,C1orf137 +388677,NOTCH2NL +388695,LYSMD1 +388697,HRNR +388698,FLG2 +3887,KRT81 +388701,C1orf189 +388722,C1orf53 +388730,TMEM81 +388743,CAPN8 +388753,COA6 +388759,C1orf229 +388780,LOC388780 +388795,EFCAB8 +388799,FAM209B +3888,KRT82 +388813,LOC388813 +388818,KRTAP26-1 +388820,LOC388820 +388849,LOC388849 +388886,LRRC75B +3889,KRT83 +388931,MFSD2B +388939,C2orf71 +388946,TMEM247 +388951,TSPYL6 +388960,C2orf78 +388962,BOLA3 +388963,C2orf81 +388969,C2orf68 +389,RHOC +3890,KRT84 +389015,SLC9A4 +389036,ACT +389058,SP5 +389072,PLEKHM3 +389073,C2orf80 +389075,RESP18 +389084,C2orf82 +389090,OR6B2 +3891,KRT85 +389114,ZNF662 +389118,CDHR4 +389119,FAM212A +389123,IQCF2 +389124,IQCF5 +389125,MUSTN1 +389136,VGLL3 +389151,PRR23B +389152,PRR23C +389158,PLSCR5 +389161,ANKUB1 +389170,LEKR1 +389177,TMEM212 +389197,C4orf50 +389199,LOC389199 +3892,KRT86 +389203,SMIM20 +389206,BEND4 +389207,GRXCR1 +389208,TMPRSS11F +389257,LRRC14B +389289,ANXA2R +389320,TEX43 +389333,PROB1 +389336,C5orf46 +389337,ARHGEF37 +389362,PSMG4 +389376,SFTA2 +389383,CLPSL2 +389384,C6orf222 +389396,GLYATL3 +389400,GFRAL +389405,LOC389405 +389421,LIN28B +389422,C6orf183 +389432,SAMD5 +389434,IYD +389493,NUPR1L +3895,KTN1 +389524,GTF2IRD2B +389541,LAMTOR4 +389549,FEZF1 +389558,FAM180A +389602,LOC389602 +389610,XKR5 +389643,NUGGC +389649,C8orf86 +389658,FAM150A +389668,XKR9 +389676,C8orf87 +389677,RBM12B +389690,MROH5 +389692,MAFA +3897,L1CAM +389730,SPATA31A6 +389761,SPATA31D4 +389762,SPATA31D3 +389763,SPATA31D1 +389766,C9orf153 +389792,IER5L +389799,C9orf171 +3898,LAD1 +389812,LCN15 +389813,C9orf172 +389816,LRRC26 +389827,TMEM8C +389831,LOC389831 +389840,MAP3K15 +389852,SPACA5 +389856,USP27X +389860,PAGE2B +389874,ZCCHC13 +389895,LOC389895 +389898,UBE2NL +3899,AFF3 +389903,CSAG3 +389908,LOC389908 +389941,C1QL3 +39,ACAT2 +390,RND3 +390010,NKX1-2 +390036,OR52K1 +390037,OR52I1 +390038,OR51D1 +390054,OR52A5 +390058,OR51B6 +390059,OR51M1 +390061,OR51Q1 +390063,OR51I1 +390064,OR51I2 +390066,OR52D1 +390067,OR52H1 +390072,OR52N4 +390075,OR52N5 +390077,OR52N2 +390078,OR52E6 +390079,OR52E8 +390081,OR52E4 +390083,OR56A3 +390084,OR56A5 +390093,OR10A6 +390110,ACCSL +390113,OR4X1 +390142,OR5D13 +390144,OR5D16 +390148,OR5W2 +390151,OR8H2 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+390937,LOC390937 +390940,PINLYP +390980,ZNF805 +390992,HES3 +390999,PRAMEF12 +391,RHOG +3910,LAMA4 +391002,PRAMEF8 +391003,LOC391003 +391004,PRAMEF17 +391013,PLA2G2C +391059,FRRS1 +3911,LAMA5 +391104,VHLL +391107,OR10K2 +391109,OR10K1 +391112,OR6Y1 +391114,OR6K3 +391123,VSIG8 +391189,OR11L1 +391190,OR2L8 +391191,OR2AK2 +391192,OR2L3 +391194,OR2M2 +391195,OR2T33 +391196,OR2M7 +3912,LAMB1 +391211,OR2G6 +391230,LOC391230 +391253,SPINT4 +3913,LAMB2 +391322,LOC391322 +391356,PTRHD1 +391365,SULT6B1 +3914,LAMB3 +391475,DYTN +3915,LAMC1 +3916,LAMP1 +391712,TRIM61 +391723,HELT +3918,LAMC2 +392,ARHGAP1 +3920,LAMP2 +3921,RPSA +392138,OR2A25 +392188,USP17L8 +392197,USP17L7 +392255,GDF6 +392275,SMPD5 +392307,FAM221B +392309,OR13J1 +392376,OR13C2 +392390,OR1L6 +392391,OR5C1 +392392,OR1K1 +392399,LCN9 +392465,GLOD5 +392490,FLJ44635 +3925,STMN1 +392509,ARL13A +392617,ELFN1 +392636,AGMO +3927,LASP1 +392843,IQCA1L +392862,GRID2IP +3929,LBP +393,ARHGAP4 +3930,LBR +393046,OR2A5 +3931,LCAT +3932,LCK +3933,LCN1 +3934,LCN2 +3936,LCP1 +3937,LCP2 +3938,LCT +3939,LDHA +394,ARHGAP5 +394263,MUC21 +3945,LDHB +3948,LDHC +3949,LDLR +395,ARHGAP6 +3950,LECT2 +3952,LEP +3953,LEPR +3954,LETM1 +3955,LFNG +3956,LGALS1 +3957,LGALS2 +3958,LGALS3 +3959,LGALS3BP +396,ARHGDIA +3960,LGALS4 +3963,LGALS7 +3964,LGALS8 +3965,LGALS9 +397,ARHGDIB +3972,LHB +3973,LHCGR +3975,LHX1 +3976,LIF +3977,LIFR +3978,LIG1 +398,ARHGDIG +3980,LIG3 +3981,LIG4 +3982,LIM2 +3983,ABLIM1 +3984,LIMK1 +3985,LIMK2 +3987,LIMS1 +3988,LIPA +399,RHOH +3990,LIPC +3991,LIPE +3992,FADS1 +3993,LLGL2 +399473,SPRED3 +399474,TMEM200B +3995,FADS3 +399512,SLC25A35 +3996,LLGL1 +399664,MEX3D +399665,FAM102A +399671,HEATR4 +399687,MYO18A +399693,MGC50722 +399694,SHC4 +399697,CTXN2 +399726,CASC10 +3998,LMAN1 +399814,C10orf120 +399818,METTL10 +399823,FOXI2 +399832,DKFZp686M1136 +399884,LOC399884 +399888,FAM180B +399909,PCNXL3 +399939,TRIM49D1 +399947,C11orf87 +399948,COLCA1 +399949,C11orf88 +399967,PATE2 +399968,PATE4 +399979,SNX19 +40,ASIC2 +400,ARL1 +4000,LMNA +400073,C12orf76 +4001,LMNB1 +400120,SERTM1 +400165,ATP11AUN +400224,PLEKHD1 +400258,C14orf180 +400359,C15orf53 +400360,C15orf54 +4004,LMO1 +400410,ST20 +400451,FAM174B +400499,LOC400499 +4005,LMO2 +400506,KNOP1 +400566,C17orf97 +400569,MED11 +400581,GRAPL +400591,C17orf102 +400629,TEX19 +400658,C18orf65 +400668,PRSS57 +400673,VMAC +400682,LOC400682 +4007,PRICKLE3 +400713,ZNF880 +400720,ZNF772 +400735,PRAMEF4 +400736,LOC400736 +400745,SH2D5 +400746,NCMAP +400757,C1orf141 +400793,C1orf226 +400797,LINC00083 +4008,LMO7 +400818,NBPF9 +400823,FAM177B +400830,DEFB132 +400831,C20orf202 +400863,LINC00649 +400891,LRRC74B +4009,LMX1A +400916,CHCHD10 +400930,DKFZp547B139 +400935,IL17REL +400950,C2orf91 +400954,EML6 +400961,PAIP2B +400966,RGPD1 +400986,ANKRD36C +401,PHOX2A +4010,LMX1B +401024,FSIP2 +401027,C2orf66 +401036,ASB18 +401040,LOC401040 +401052,LOC401052 +401067,IQCF3 +401089,FOXL2NB +401097,C3orf80 +401115,C4orf48 +401124,DTHD1 +401137,PRR27 +401138,AMTN +401145,CCSER1 +401152,C4orf3 +401190,RGS7BP +4012,LNPEP +401207,C5orf63 +401236,STMND1 +401250,MCCD1 +401251,SAPCD1 +401258,RAB44 +401262,CRIP3 +401265,KLHL31 +401285,TCP10L2 +4013,VWA5A +401335,C7orf65 +401387,LRRD1 +401388,C7orf76 +401399,PRRT4 +4014,LOR +401400,LOC401400 +401409,RAB19 +401427,OR2A7 +401447,USP17L1 +401466,C8orf59 +401474,SAMD12 +401494,HACD4 +401498,TMEM215 +4015,LOX +401505,TOMM5 +401535,C9orf170 +401541,CENPP +401546,C9orf152 +401548,SNX30 +401551,WDR38 +401562,LCNL1 +401563,C9orf139 +401565,FAM166A +4016,LOXL1 +401612,SLC25A53 +401647,GOLGA7B +401665,OR51T1 +401666,OR51A4 +401667,OR51A2 +4017,LOXL2 +401720,FIGNL2 +4018,LPA +4019,LPAL1 +401934,RNF223 +401944,LDLRAD2 +401992,OR2T2 +401993,OR2T5 +401994,OR14I1 +402,ARL2 +402036,LOC402036 +402055,SRRD +402096,LOC402096 +402117,VWC2L +402135,OR5K2 +402160,CFAP99 +402269,LOC402269 +4023,LPL +402317,OR2A42 +402381,SOHLH1 +402415,XKRX +4025,LPO +402569,KPNA7 +402573,C7orf61 +4026,LPP +402635,GRIFIN +402665,IGLON5 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+414318,C9orf106 +414325,DEFB103A +414328,IDNK +414332,LCN10 +4144,MAT2A +4145,MATK +4146,MATN1 +4147,MATN2 +4148,MATN3 +414899,BLID +4149,MAX +414918,DENND6B +414919,C8orf82 +415,ARSE +4150,MAZ +4151,MB +415116,PIM3 +415117,STX19 +4152,MBD1 +4153,MBL2 +4154,MBNL1 +4155,MBP +4157,MC1R +4158,MC2R +4159,MC3R +416,ARSF +4160,MC4R +4161,MC5R +4162,MCAM +4163,MCC +4166,CHST6 +4168,MCF2 +417,ART1 +4170,MCL1 +4171,MCM2 +4172,MCM3 +4173,MCM4 +4174,MCM5 +4175,MCM6 +4176,MCM7 +4179,CD46 +4184,SMCP +4185,ADAM11 +4188,MDFI +4189,DNAJB9 +419,ART3 +4190,MDH1 +4191,MDH2 +4192,MDK +4193,MDM2 +4194,MDM4 +4199,ME1 +420,ART4 +4200,ME2 +4201,MEA1 +4204,MECP2 +4205,MEF2A +4207,MEF2BNB-MEF2B +4208,MEF2C +4209,MEF2D +421,ARVCF +4210,MEFV +4211,MEIS1 +4212,MEIS2 +4214,MAP3K1 +4215,MAP3K3 +4216,MAP3K4 +4217,MAP3K5 +4218,RAB8A +4221,MEN1 +4222,MEOX1 +4223,MEOX2 +4224,MEP1A +4225,MEP1B +4228,MER5 +4232,MEST +4233,MET +4234,METTL1 +4236,MFAP1 +4237,MFAP2 +4238,MFAP3 +4239,MFAP4 +4240,MFGE8 +4241,MFI2 +4242,MFNG +4245,MGAT1 +4246,SCGB2A1 +4247,MGAT2 +4248,MGAT3 +4249,MGAT5 +4250,SCGB2A2 +425054,VCX3B +4253,CTAGE5 +4254,KITLG +4255,MGMT +4256,MGP +4257,MGST1 +4258,MGST2 +4259,MGST3 +4261,CIITA +4267,CD99 +427,ASAH1 +4277,MICB +4281,MID1 +4282,MIF +4283,CXCL9 +4284,MIP +4285,MIPEP +4286,MITF +4287,ATXN3 +4288,MKI67 +4289,MKLN1 +429,ASCL1 +4291,MLF1 +4292,MLH1 +4293,MAP3K9 +4294,MAP3K10 +4295,MLN +4296,MAP3K11 +4297,KMT2A +4298,MLLT1 +4299,AFF1 +43,ACHE +430,ASCL2 +4300,MLLT3 +4301,MLLT4 +4302,MLLT6 +4303,FOXO4 +4306,NR3C2 +4308,TRPM1 +4311,MME +4312,MMP1 +4313,MMP2 +4314,MMP3 +4316,MMP7 +4317,MMP8 +431704,RGS21 +431705,ASTL +431707,LHX8 +4318,MMP9 +4319,MMP10 +432,ASGR1 +4320,MMP11 +4321,MMP12 +4322,MMP13 +4323,MMP14 +4324,MMP15 +4325,MMP16 +4326,MMP17 +4327,MMP19 +4329,ALDH6A1 +433,ASGR2 +4330,MN1 +4331,MNAT1 +4332,MNDA +4335,MNT +4336,MOBP +4337,MOCS1 +4338,MOCS2 +434,ASIP +4340,MOG +4342,MOS +4343,MOV10 +4345,CD200 +435,ASL +4350,MPG +4351,MPI +4352,MPL +4353,MPO +4354,MPP1 +4355,MPP2 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+51621,KLF13 +51622,CCZ1 +51626,DYNC2LI1 +51629,SLC25A39 +5163,PDK1 +51631,LUC7L2 +51633,OTUD6B +51634,RBMX2 +51635,DHRS7 +51637,C14orf166 +51639,SF3B6 +5164,PDK2 +51642,MRPL48 +51643,TMBIM4 +51645,PPIL1 +51646,YPEL5 +51647,FAM96B +51649,MRPS23 +5165,PDK3 +51650,MRPS33 +51651,PTRH2 +51652,CHMP3 +51654,CDK5RAP1 +51655,RASD1 +51657,STYXL1 +51659,GINS2 +5166,PDK4 +51660,MPC1 +51661,FKBP7 +51663,ZFR +51665,ASB1 +51666,ASB4 +51667,NUB1 +51668,HSPB11 +51669,SARAF +5167,ENPP1 +51673,TPPP3 +51676,ASB2 +51678,MPP6 +5168,ENPP2 +51684,SUFU +51686,OAZ3 +5169,ENPP3 +51690,LSM7 +51691,LSM8 +51692,CPSF3 +51693,TRAPPC2L +51696,HECA +51699,VPS29 +517,ATP5G2 +5170,PDPK1 +51700,CYB5R2 +51701,NLK +51702,PADI3 +51703,ACSL5 +51704,GPRC5B +51705,EMCN +51706,CYB5R1 +51710,ZNF44 +51714,SELT +51715,RAB23 +51719,CAB39 +5172,SLC26A4 +51720,UIMC1 +51725,FBXO40 +51726,DNAJB11 +51727,CMPK1 +51728,POLR3K +51729,WBP11 +5173,PDYN +51733,UPB1 +51734,MSRB1 +51735,RAPGEF6 +51738,GHRL +5174,PDZK1 +51741,WWOX +51742,ARID4B +51744,CD244 +51747,LUC7L3 +5175,PECAM1 +51750,RTEL1 +51751,HIGD1B +51752,ERAP1 +51754,TMEM8B +51755,CDK12 +51759,C9orf78 +5176,SERPINF1 +51760,SYT17 +51761,ATP8A2 +51762,RAB8B +51763,INPP5K +51764,GNG13 +51765,STK26 +51768,TM7SF3 +51773,RSF1 +51776,ZAK +51778,MYOZ2 +5178,PEG3 +51780,KDM3B +5179,PENK +518,ATP5G3 +51802,ASIC5 +51804,SIX4 +51805,COQ3 +51806,CALML5 +51807,TUBA8 +51808,PHAX +51809,GALNT7 +51816,CECR1 +5182,PEPB +5183,PEPC +5184,PEPD +5185,PEPE +5187,PER1 +5188,GATB +5189,PEX1 +5190,PEX6 +5191,PEX7 +5192,PEX10 +5193,PEX12 +5194,PEX13 +5195,PEX14 +5196,PF4 +5197,PF4V1 +5198,PFAS +5199,CFP +52,ACP1 +5201,PFDN1 +5202,PFDN2 +5203,PFDN4 +5204,PFDN5 +5205,ATP8B1 +5207,PFKFB1 +5208,PFKFB2 +5209,PFKFB3 +521,ATP5I +5210,PFKFB4 +5211,PFKL +5212,VIT +5213,PFKM +5214,PFKP +5216,PFN1 +5217,PFN2 +5218,CDK14 +522,ATP5J +5222,PGA5 +5223,PGAM1 +5224,PGAM2 +5225,PGC +5226,PGD +5228,PGF +5229,PGGT1B +523,ATP6V1A +5230,PGK1 +5232,PGK2 +5236,PGM1 +5238,PGM3 +5239,PGM5 +5241,PGR +5243,ABCB1 +5244,ABCB4 +5245,PHB +525,ATP6V1B1 +5250,SLC25A3 +5251,PHEX +5252,PHF1 +5253,PHF2 +5255,PHKA1 +5256,PHKA2 +5257,PHKB +526,ATP6V1B2 +5260,PHKG1 +5261,PHKG2 +5264,PHYH +5265,SERPINA1 +5266,PI3 +5267,SERPINA4 +5268,SERPINB5 +5269,SERPINB6 +527,ATP6V0C +5270,SERPINE2 +5271,SERPINB8 +5272,SERPINB9 +5273,SERPINB10 +5274,SERPINI1 +5275,SERPINB13 +5276,SERPINI2 +5277,PIGA +5279,PIGC +528,ATP6V1C1 +5281,PIGF +5283,PIGH +5284,PIGR +5286,PIK3C2A +5287,PIK3C2B +5288,PIK3C2G +5289,PIK3C3 +529,ATP6V1E1 +5290,PIK3CA +5291,PIK3CB +5292,PIM1 +5293,PIK3CD +5294,PIK3CG +5295,PIK3R1 +5296,PIK3R2 +5297,PI4KA +5298,PI4KB +53,ACP2 +5300,PIN1 +5303,PIN4 +5304,PIP +5305,PIP4K2A +5306,PITPNA +5307,PITX1 +5308,PITX2 +5309,PITX3 +5310,PKD1 +5311,PKD2 +5313,PKLR +5314,PKHD1 +5315,PKM +5316,PKNOX1 +5317,PKP1 +5318,PKP2 +5319,PLA2G1B +5320,PLA2G2A +5321,PLA2G4A +5322,PLA2G5 +5324,PLAG1 +5325,PLAGL1 +5326,PLAGL2 +5327,PLAT +5328,PLAU +5329,PLAUR +533,ATP6V0B +5330,PLCB2 +5331,PLCB3 +5332,PLCB4 +5333,PLCD1 +53335,BCL11A +53336,CPXCR1 +53339,BTBD1 +5334,PLCL1 +53340,SPA17 +53342,IL17D +53343,NUDT9 +53344,CHIC1 +53345,TM6SF2 +53346,TM6SF1 +53347,UBASH3A +53349,ZFYVE1 +5335,PLCG1 +53353,LRP1B +53354,PANK1 +53358,SHC3 +5336,PLCG2 +5337,PLD1 +53371,NUP54 +53373,TPCN1 +5338,PLD2 +5339,PLEC +534,ATP6V1G2 +5340,PLG +53405,CLIC5 +53407,STX18 +5341,PLEK +5342,PLGLB2 +5343,PLGLB1 +5345,SERPINF2 +5346,PLIN1 +5347,PLK1 +5348,FXYD1 +5349,FXYD3 +535,ATP6V0A1 +5350,PLN +5351,PLOD1 +5352,PLOD2 +5354,PLP1 +5355,PLP2 +5356,PLRG1 +5357,PLS1 +5358,PLS3 +5359,PLSCR1 +5360,PLTP +5361,PLXNA1 +53615,MBD3 +53616,ADAM22 +5362,PLXNA2 +53630,BCO1 +53632,PRKAG3 +53635,PTOV1 +53637,S1PR5 +5364,PLXNB1 +5365,PLXNB3 +5366,PMAIP1 +5367,PMCH +5368,PNOC +537,ATP6AP1 +5371,PML +5372,PMM1 +5373,PMM2 +5375,PMP2 +5376,PMP22 +5378,PMS1 +538,ATP7A +53820,RIPPLY3 +53822,FXYD7 +53826,FXYD6 +53827,FXYD5 +53828,FXYD4 +53829,P2RY13 +53831,GPR84 +53832,IL20RA +53833,IL20RB +53834,FGFRL1 +53836,GPR87 +53838,C11orf24 +53840,TRIM34 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+54788,DNAJB12 +5479,PPIB +54790,TET2 +54793,KCTD9 +54795,TRPM4 +54796,BNC2 +54797,MED18 +54798,DCHS2 +54799,MBTD1 +5480,PPIC +54800,KLHL24 +54801,HAUS6 +54802,TRIT1 +54805,CNNM2 +54806,AHI1 +54807,ZNF586 +54808,DYM +54809,SAMD9 +5481,PPID +54810,GIPC2 +54811,ZNF562 +54812,AFTPH +54813,KLHL28 +54814,QPCTL +54815,GATAD2A +54816,ZNF280D +54819,ZCCHC10 +54820,NDE1 +54821,ERCC6L +54822,TRPM7 +54823,SWT1 +54825,CDHR2 +54826,GIN1 +54827,NXPE4 +54828,BCAS3 +54829,ASPN +54830,NUP62CL +54831,BEST2 +548313,SSX4B +54832,VPS13C +54834,GDAP2 +54836,BSPRY +54838,WBP1L +54839,LRRC49 +54840,APTX +54841,BIVM +54842,MFSD6 +54843,SYTL2 +54845,ESRP1 +54847,SIDT1 +54848,ARHGEF38 +54849,DEF8 +54850,FBXL12 +54851,ANKRD49 +54852,PAQR5 +54853,WDR55 +54854,FAM83E +54855,FAM46C +54856,GON4L +54857,GDPD2 +54858,PGPEP1 +54859,ELP6 +548593,SLX1A +548596,CKMT1A +54860,MS4A12 +54861,SNRK +54862,CC2D1A +54863,TOR4A +548644,POLR2J3 +548645,DNAJC25 +54865,GPATCH4 +54866,PPP1R14D +54867,TMEM214 +54868,TMEM104 +54869,EPS8L1 +54870,QRICH1 +54872,PIGG +54873,PALMD +54874,FNBP1L +54875,CNTLN +54876,DCAF16 +54877,ZCCHC2 +54878,DPP8 +54879,ST7L +54880,BCOR +54881,TEX10 +54882,ANKHD1 +54883,CWC25 +54884,RETSAT +54885,TBC1D8B +54886,LPPR1 +54887,UHRF1BP1 +54888,NSUN2 +54890,ALKBH5 +54891,INO80D +54892,NCAPG2 +54893,MTMR10 +54894,RNF43 +54896,PQLC2 +54897,CASZ1 +54898,ELOVL2 +54899,PXK +549,AUH +54900,LAX1 +54901,CDKAL1 +54902,TTC19 +54903,MKS1 +54904,WHSC1L1 +54905,CYP2W1 +54906,FAM208B +54908,SPDL1 +54910,SEMA4C +54913,RPP25 +54914,FOCAD +54915,YTHDF1 +54916,TMEM260 +54918,CMTM6 +54919,DNAAF5 +54920,DUS2 +54921,CHTF8 +54922,RASIP1 +54923,LIME1 +54925,ZSCAN32 +54926,UBE2R2 +54927,CHCHD3 +54928,IMPAD1 +54929,TMEM161A +5493,PPL +54930,HAUS4 +54931,TRMT10C +54932,EXD3 +54933,RHBDL2 +54934,KANSL2 +54935,DUSP23 +54936,ADPRHL2 +54937,SOHLH2 +54938,SARS2 +54939,COMMD4 +5494,PPM1A +54940,OCIAD1 +54941,RNF125 +54942,FAM206A +54943,DNAJC28 +54946,SLC41A3 +54947,LPCAT2 +54948,MRPL16 +54949,SDHAF2 +5495,PPM1B +54951,COMMD8 +54952,TRNAU1AP +54953,C1orf27 +54954,FAM120C +54955,C1orf109 +54956,PARP16 +54957,TXNL4B +54958,TMEM160 +54959,ODAM +5496,PPM1G +54960,GEMIN8 +54961,SSH3 +54962,TIPIN +54963,UCKL1 +54964,C1orf56 +54965,PIGX +54967,CT55 +54968,TMEM70 +54969,C4orf27 +54970,TTC12 +54971,BANP +54972,TMEM132A +54973,CPSF3L +54974,THG1L +54976,C20orf27 +54977,SLC25A38 +54978,SLC35F6 +54979,HRASLS2 +5498,PPOX +54980,C2orf42 +54981,NMRK1 +54982,CLN6 +54984,PINX1 +54985,HCFC1R1 +54986,ULK4 +54987,C1orf123 +54988,ACSM5 +54989,ZNF770 +5499,PPP1CA +54991,C1orf159 +54993,ZSCAN2 +54994,GID8 +54995,OXSM +54996,MARC2 +54997,TESC +54998,AURKAIP1 +55,ACPP +550,AUP1 +5500,PPP1CB +55001,TTC22 +55002,TMCO3 +55003,PAK1IP1 +55004,LAMTOR1 +55005,RMND1 +55006,TRMT61B +55007,FAM118A +55008,HERC6 +55009,C19orf24 +5501,PPP1CC +55010,PARPBP +55011,PIH1D1 +55012,PPP2R3C +55013,CCDC109B +55014,STX17 +55015,PRPF39 +55016,MARCH1 +55017,C14orf119 +5502,PPP1R1A +55020,TTC38 +55022,PID1 +55023,PHIP +55024,BANK1 +55025,FLJ20712 +55026,TMEM255A +55027,HEATR3 +55028,C17orf80 +55030,FBXO34 +55031,USP47 +55032,SLC35A5 +55033,FKBP14 +55034,MOCOS +55035,NOL8 +55036,CCDC40 +55037,PTCD3 +55038,CDCA4 +55039,TRMT12 +5504,PPP1R2 +55040,EPN3 +55041,PLEKHB2 +55048,VPS37C +55049,C19orf60 +55051,NRDE2 +55052,MRPL20 +55054,ATG16L1 +55055,ZWILCH +55057,AIM1L +5506,PPP1R3A +55061,SUSD4 +55062,WIPI1 +55063,ZCWPW1 +550631,CCDC157 +55064,SPATA6L +55065,SLC52A1 +55066,PDPR +55068,ENOX1 +55069,TMEM248 +5507,PPP1R3C +55070,DET1 +55071,C9orf40 +55072,RNF31 +55074,OXR1 +55075,UACA +55076,TMEM45A +55079,FEZF2 +55080,TAPBPL +55081,IFT57 +55082,ARGLU1 +55083,KIF26B +55084,SOBP +55086,CXorf57 +55088,CCDC186 +55089,SLC38A4 +5509,PPP1R3D +55090,MED9 +55092,TMEM51 +55093,WDYHV1 +55094,GPATCH1 +55095,SAMD4B +55096,EBLN2 +551,AVP +5510,PPP1R7 +55100,WDR70 +55101,ATP5SL +55102,ATG2B +55103,RALGPS2 +55105,GPATCH2 +55106,SLFN12 +55107,ANO1 +55108,BSDC1 +55109,AGGF1 +5511,PPP1R8 +55110,MAGOHB +55111,PLEKHJ1 +55112,WDR60 +55113,XKR8 +55114,ARHGAP17 +55116,TMEM39B +55117,SLC6A15 +55118,CRTAC1 +55119,PRPF38B +55120,FANCL +55122,AKIRIN2 +55124,PIWIL2 +55125,CEP192 +55127,HEATR1 +55128,TRIM68 +55129,ANO10 +55130,ARMC4 +55131,RBM28 +55132,LARP1B +55133,SRBD1 +55135,WRAP53 +55137,FIGN +55138,FAM90A1 +55139,ANKZF1 +5514,PPP1R10 +55140,ELP3 +55142,HAUS2 +55143,CDCA8 +55144,LRRC8D +55145,THAP1 +55146,ZDHHC4 +55147,RBM23 +55148,UBR7 +55149,MTPAP +5515,PPP2CA +55150,C19orf73 +55151,TMEM38B +55152,DALRD3 +55153,SDAD1 +55154,MSTO1 +55156,ARMC1 +55157,DARS2 +55159,RFWD3 +5516,PPP2CB +55160,ARHGEF10L +55161,TMEM33 +55163,PNPO +55164,SHQ1 +55165,CEP55 +55166,CENPQ +55167,MSL2 +55168,MRPS18A +55170,PRMT6 +55171,TBCCD1 +55172,DNAAF2 +55173,MRPS10 +55174,INTS10 +55175,KLHL11 +55176,SEC61A2 +55177,RMDN3 +55178,RNMTL1 +55179,FAIM +5518,PPP2R1A +55180,LINS +55181,SMG8 +55182,RNF220 +55183,RIF1 +55184,DZANK1 +55186,SLC25A36 +55187,VPS13D +55188,RIC8B +5519,PPP2R1B +55190,NUDT11 +55191,NADSYN1 +55192,DNAJC17 +55193,PBRM1 +55194,EVA1B +55195,C14orf105 +55196,KIAA1551 +55197,RPRD1A +55198,APPL2 +55199,FAM86C1 +552,AVPR1A +5520,PPP2R2A +55200,PLEKHG6 +55201,MAP1S +55203,LGI2 +55204,GOLPH3L +55205,ZNF532 +55206,SBNO1 +55207,ARL8B +55208,DCUN1D2 +55209,SETD5 +5521,PPP2R2B +55210,ATAD3A +55211,DPPA4 +55212,BBS7 +55213,RCBTB1 +55214,P3H2 +55215,FANCI +55216,C11orf57 +55217,TMLHE +55218,EXD2 +55219,TMEM57 +5522,PPP2R2C +55220,KLHDC8A +55222,LRRC20 +55223,TRIM62 +55224,ETNK2 +55225,RAVER2 +55226,NAT10 +55227,LRRC1 +55228,PNMAL1 +55229,PANK4 +5523,PPP2R3A +55230,USP40 +55231,CCDC87 +55233,MOB1A +55234,SMU1 +55236,UBA6 +55237,VRTN +55238,SLC38A7 +55239,OGFOD1 +5524,PPP2R4 +55240,STEAP3 +55243,KIRREL +55244,SLC47A1 +55245,UQCC1 +55246,CCDC25 +55247,NEIL3 +55248,TMEM206 +55249,YY1AP1 +5525,PPP2R5A +55250,ELP2 +55251,PCMTD2 +55252,ASXL2 +55253,TYW1 +55254,TMEM39A +55255,WDR41 +55256,ADI1 +55257,MRGBP +55258,THNSL2 +55259,CASC1 +5526,PPP2R5B +55260,TMEM143 +55262,C7orf43 +55266,TMEM19 +55267,PRR34 +55268,ECHDC2 +55269,PSPC1 +5527,PPP2R5C +55270,NUDT15 +55272,IMP3 +55273,TMEM100 +55274,PHF10 +55275,VPS53 +55276,PGM2 +55277,FGGY +55278,QRSL1 +55279,ZNF654 +5528,PPP2R5D +55280,CWF19L1 +55281,TMEM140 +55282,LRRC36 +55283,MCOLN3 +55284,UBE2W +55285,RBM41 +55286,C4orf19 +55287,TMEM40 +55288,RHOT1 +552889,ATXN7L3B +55289,ACOXL +552891,DNAJC25-GNG10 +5529,PPP2R5E +55290,BRF2 +552900,BOLA2 +55291,PPP6R3 +55293,UEVLD +55294,FBXW7 +55295,KLHL26 +55296,TBC1D19 +55297,CCDC91 +55298,RNF121 +55299,BRIX1 +553,AVPR1B +5530,PPP3CA +55300,PI4K2B +55301,OLAH +55303,GIMAP4 +55304,SPTLC3 +55308,DDX19A +5531,PPP4C +55311,ZNF444 +553115,PEF1 +55312,RFK +553128,KIR2DL5B +55313,CPPED1 +55314,TMEM144 +55315,SLC29A3 +553158,PRR5-ARHGAP8 +55316,RSAD1 +55317,AP5S1 +55319,TMA16 +5532,PPP3CB +55320,MIS18BP1 +55321,TMEM74B +55322,C5orf22 +55323,LARP6 +55324,ABCF3 +55325,UFSP2 +55326,AGPAT5 +55327,LIN7C +55328,RNLS +55329,MNS1 +5533,PPP3CC +55330,BLOC1S4 +55331,ACER3 +55332,DRAM1 +55333,SYNJ2BP +55334,SLC39A9 +55335,NIPSNAP3B +55336,FBXL8 +55337,C19orf66 +55339,WDR33 +5534,PPP3R1 +55340,GIMAP5 +55341,LSG1 +55342,STRBP +55343,SLC35C1 +55344,PLCXD1 +55345,ZGRF1 +55346,TCP11L1 +55347,ABHD10 +55349,CHDH +5535,PPP3R2 +55350,VNN3 +55351,STK32B +55352,COPRS +55353,LAPTM4B +55355,HJURP +55356,SLC22A15 +55357,TBC1D2 +55359,STYK1 +5536,PPP5C +55361,PI4K2A +55362,TMEM63B +55363,HEMGN +55364,IMPACT +55365,TMEM176A +55366,LGR4 +55367,PIDD1 +5537,PPP6C +55374,TMCO6 +55379,LRRC59 +5538,PPT1 +55388,MCM10 +5539,PPY +55390,PRO2268 +554,AVPR2 +5540,NPY4R +5542,PRB1 +55421,C17orf85 +55422,ZNF331 +554223,LOC554223 +55423,SIRPG +554235,ASPDH +55425,GPALPP1 +554251,FBXO48 +554282,FAM72C +554313,HIST2H4B +55432,YOD1 +55435,AP1AR +55437,STRADB +5544,PRB3 +5545,PRB4 +55450,CAMK2N1 +55454,CSGALNACT2 +5546,PRCC +55466,DNAJA4 +5547,PRCP +55471,NDUFAF7 +55486,PARL +5549,PRELP +5550,PREP +55500,ETNK1 +55501,CHST12 +55502,HES6 +55503,TRPV6 +55504,TNFRSF19 +55505,NOP10 +55506,H2AFY2 +55507,GPRC5D +55508,SLC35E3 +55509,BATF3 +5551,PRF1 +55510,DDX43 +55511,SAGE1 +55512,SMPD3 +55515,ASIC4 +5552,SRGN +55520,ELAC1 +55521,TRIM36 +55526,DHTKD1 +55527,FEM1A +55529,TMEM55A +5553,PRG2 +55530,SVOP +55531,ELMOD1 +55532,SLC30A10 +55534,MAML3 +55536,CDCA7L +5554,PRH1 +55540,IL17RB +55544,RBM38 +55547,HAB1 +5555,PRH2 +55552,ZNF823 +55553,SOX6 +55554,KLK15 +55556,ENOSF1 +55558,PLXNA3 +55559,HAUS7 +55561,CDC42BPG +55565,ZNF821 +55567,DNAH3 +55568,GALNT10 +5557,PRIM1 +55571,CNOT11 +55572,FOXRED1 +55573,CDV3 +55576,STAB2 +55577,NAGK +55578,SUPT20H +5558,PRIM2 +55582,KIF27 +55584,CHRNA9 +55585,UBE2Q1 +55586,MIOX +55588,MED29 +55589,BMP2K +55591,VEZT +55593,OTUD5 +55596,ZCCHC8 +55599,RNPC3 +55600,ITLN1 +55601,DDX60 +55602,CDKN2AIP +55603,FAM46A +55604,LRRC16A +55605,KIF21A +55607,PPP1R9A +55608,ANKRD10 +55609,ZNF280C +55610,CCDC132 +55611,OTUB1 +55612,FERMT1 +55613,MTMR8 +55614,KIF16B +55615,PRR5 +55616,ASAP3 +55617,TASP1 +55619,DOCK10 +5562,PRKAA1 +55620,STAP2 +55621,TRMT1 +55622,TTC27 +55623,THUMPD1 +55624,POMGNT1 +55625,ZDHHC7 +55626,AMBRA1 +55627,SMPD4 +55628,ZNF407 +55629,PNRC2 +5563,PRKAA2 +55630,SLC39A4 +55631,LRRC40 +55632,G2E3 +55633,TBC1D22B +55634,KRBOX4 +55635,DEPDC1 +55636,CHD7 +55638,SYBU +5564,PRKAB1 +55640,FLVCR2 +55643,BTBD2 +55644,OSGEP +55646,LYAR +55647,RAB20 +5565,PRKAB2 +55650,PIGV +55651,NHP2 +55652,SLC48A1 +55653,BCAS4 +55654,TMEM127 +55655,NLRP2 +55656,INTS8 +55657,ZNF692 +55658,RNF126 +55659,ZNF416 +5566,PRKACA +55660,PRPF40A +55661,DDX27 +55662,HIF1AN +55663,ZNF446 +55664,CDC37L1 +55665,URGCP +55666,NPLOC4 +55667,DENND4C +55668,GPATCH2L +55669,MFN1 +5567,PRKACB +55670,PEX26 +55671,SMEK1 +55672,NBPF1 +55676,SLC30A6 +55677,IWS1 +55679,LIMS2 +5568,PRKACG +55680,RUFY2 +55681,SCYL2 +55683,KANSL3 +55684,RABL6 +55686,MREG +55687,TRMU +55689,YEATS2 +5569,PKIA +55690,PACS1 +55691,FRMD4A +55692,LUC7L +55693,KDM4D +55695,NSUN5 +55696,RBM22 +55697,VAC14 +55698,RADIL +55699,IARS2 +5570,PKIB +55700,MAP7D1 +55701,ARHGEF40 +55702,CCDC94 +55703,POLR3B +55704,CCDC88A +55705,IPO9 +55706,NDC1 +55707,NECAP2 +55709,KBTBD4 +5571,PRKAG1 +55711,FAR2 +55713,ZNF334 +55714,TENM3 +55715,DOK4 +55716,LMBR1L +55717,WDR11 +55718,POLR3E +55719,FAM178A +55720,TSR1 +55721,IQCC +55722,CEP72 +55723,ASF1B +55726,ASUN +55727,BTBD7 +55728,N4BP2 +55729,ATF7IP +5573,PRKAR1A +55731,FAM222B +55732,C1orf112 +55733,HHAT +55734,ZFP64 +55735,DNAJC11 +55737,VPS35 +55738,ARFGAP1 +55739,CARKD +55740,ENAH +55741,EDEM2 +55742,PARVA +55743,CHFR +55744,COA1 +55745,AP5M1 +55746,NUP133 +55748,CNDP2 +55749,CCAR1 +5575,PRKAR1B +55750,AGK +55751,TMEM184C +55752,SEPT11 +55753,OGDHL +55754,TMEM30A +55755,CDK5RAP2 +55756,INTS9 +55757,UGGT2 +55758,RCOR3 +55759,WDR12 +5576,PRKAR2A +55760,DHX32 +55761,TTC17 +55762,ZNF701 +55763,EXOC1 +55764,IFT122 +55765,C1orf106 +55766,H2AFJ +55768,NGLY1 +55769,ZNF83 +5577,PRKAR2B +55770,EXOC2 +55771,PRR11 +55773,TBC1D23 +55775,TDP1 +55776,SAYSD1 +55777,MBD5 +55778,ZNF839 +55779,CFAP44 +5578,PRKCA +55780,ERMARD +55781,RIOK2 +55783,CMTR2 +55784,MCTP2 +55785,FGD6 +55786,ZNF415 +55787,TXLNG +55788,LMBRD1 +55789,DEPDC1B +5579,PRKCB +55790,CSGALNACT1 +55791,LRIF1 +55793,FAM63A +55794,DDX28 +55795,PCID2 +55796,MBNL3 +55798,METTL2B +55799,CACNA2D3 +558,AXL +5580,PRKCD +55800,SCN3B +55801,IL26 +55802,DCP1A +55803,ADAP2 +55805,LRP2BP +55806,HR +55808,ST6GALNAC1 +55809,TRERF1 +5581,PRKCE +55810,FOXJ2 +55811,ADCY10 +55812,SPATA7 +55813,UTP6 +55814,BDP1 +55815,TSNAXIP1 +55816,DOK5 +55818,KDM3A +55819,RNF130 +5582,PRKCG +55821,ALLC +55823,VPS11 +55824,PAG1 +55825,PECR +55827,DCAF6 +55829,VIMP +5583,PRKCH +55830,GLT8D1 +55831,EMC3 +55832,CAND1 +55833,UBAP2 +55835,CENPJ +55837,EAPP +55839,CENPN +5584,PRKCI +55840,EAF2 +55841,WWC3 +55843,ARHGAP15 +55844,PPP2R2D +55845,BRK1 +55846,ITFG2 +55847,CISD1 +55848,PLGRKT +5585,PKN1 +55850,USE1 +55851,PSENEN +55852,TEX2 +55854,ZC3H15 +55856,ACOT13 +55857,KIZ +55858,TMEM165 +55859,BEX1 +5586,PKN2 +55860,ACTR10 +55861,DBNDD2 +55862,ECHDC1 +55863,TMEM126B +55867,SLC22A11 +55869,HDAC8 +5587,PRKD1 +55870,ASH1L +55871,CBWD1 +55872,PBK +55876,GSDMB +55879,GABRQ +5588,PRKCQ +55884,WSB2 +55885,LMO3 +55888,ZKSCAN7 +55889,GOLGA6B +5589,PRKCSH +55890,GPRC5C +55891,LENEP +55892,MYNN +55893,ZNF395 +55894,DEFB103B +55897,MESP1 +55898,UNC45A +5590,PRKCZ +55900,ZNF302 +55901,THSD1 +55902,ACSS2 +55904,KMT2E +55905,RNF114 +55906,ZC4H2 +55907,CMAS +55908,C19orf80 +55909,BIN3 +5591,PRKDC +55911,APOBR +55914,ERBB2IP +55915,LANCL2 +55916,NXT2 +55917,CTTNBP2NL +5592,PRKG1 +55920,RCC2 +55922,NKRF +55924,FAM212B +55929,DMAP1 +5593,PRKG2 +55930,MYO5C +55937,APOM +5594,MAPK1 +5595,MAPK3 +55954,ZMAT5 +55957,LIN37 +55958,KLHL9 +55959,SULF2 +5596,MAPK4 +55964,SEPT3 +55966,AJAP1 +55967,NDUFA12 +55968,NSFL1C +55969,C20orf24 +5597,MAPK6 +55970,GNG12 +55971,BAIAP2L1 +55972,SLC25A40 +55973,BCAP29 +55974,SLC50A1 +55975,KLHL7 +5598,MAPK7 +5599,MAPK8 +55997,CFC1 +55998,NXF5 +56,ACRV1 +5600,MAPK11 +56000,NXF3 +56001,NXF2 +56005,MYDGF +56006,SMG9 +5601,MAPK9 +5602,MAPK10 +5603,MAPK13 +56033,BARX1 +56034,PDGFC +5604,MAP2K1 +5605,MAP2K2 +56052,ALG1 +5606,MAP2K3 +56061,UBFD1 +56062,KLHL4 +56063,TMEM234 +5607,MAP2K5 +5608,MAP2K6 +5609,MAP2K7 +56097,PCDHGC5 +56098,PCDHGC4 +56099,PCDHGB7 +5610,EIF2AK2 +56100,PCDHGB6 +56101,PCDHGB5 +56102,PCDHGB3 +56103,PCDHGB2 +56104,PCDHGB1 +56105,PCDHGA11 +56106,PCDHGA10 +56107,PCDHGA9 +56108,PCDHGA7 +56109,PCDHGA6 +5611,DNAJC3 +56110,PCDHGA5 +56111,PCDHGA4 +56112,PCDHGA3 +56113,PCDHGA2 +56114,PCDHGA1 +5612,PRKRIR +56121,PCDHB15 +56122,PCDHB14 +56123,PCDHB13 +56124,PCDHB12 +56125,PCDHB11 +56126,PCDHB10 +56127,PCDHB9 +56128,PCDHB8 +56129,PCDHB7 +5613,PRKX +56130,PCDHB6 +56131,PCDHB4 +56132,PCDHB3 +56133,PCDHB2 +56134,PCDHAC2 +56135,PCDHAC1 +56136,PCDHA13 +56137,PCDHA12 +56138,PCDHA11 +56139,PCDHA10 +56140,PCDHA8 +56141,PCDHA7 +56142,PCDHA6 +56143,PCDHA5 +56144,PCDHA4 +56145,PCDHA3 +56146,PCDHA2 +56147,PCDHA1 +56154,TEX15 +56155,TEX14 +56156,TEX13B +56157,TEX13A +56158,TEX12 +56159,TEX11 +56160,NDNL2 +56163,RNF17 +56164,STK31 +56165,TDRD1 +56169,GSDMC +5617,PRL +56171,DNAH7 +56172,ANKH +5618,PRLR +56180,MOSPD1 +56181,MTFR1L +5619,PRM1 +5620,PRM2 +56203,LMOD3 +56204,FAM214A +5621,PRNP +5623,PSPN +5624,PROC +56241,SUSD2 +56242,ZNF253 +56243,KIAA1217 +56244,BTNL2 +56245,C21orf62 +56246,MRAP +5625,PRODH +56252,YLPM1 +56253,CRTAM +56254,RNF20 +56255,TMX4 +56256,SERTAD4 +56257,MEPCE +56259,CTNNBL1 +5626,PROP1 +56260,C8orf44 +56261,GPCPD1 +56262,LRRC8A +56265,CPXM1 +56267,CCBL2 +56269,IRGC +5627,PROS1 +56270,WDR45B +56271,BEX4 +56287,GKN1 +56288,PARD3 +5629,PROX1 +563,AZGP1 +5630,PRPH +56300,IL36G +56301,SLC7A10 +56302,TRPV5 +5631,PRPS1 +56311,ANKRD7 +56339,METTL3 +5634,PRPS2 +56341,PRMT8 +56342,PPAN +56344,CABP5 +5635,PRPSAP1 +5636,PRPSAP2 +5638,PRRG1 +5639,PRRG2 +5641,LGMN +56413,LTB4R2 +5643,PRSM2 +5644,PRSS1 +5645,PRSS2 +5646,PRSS3 +56474,CTPS2 +56475,RPRM +56477,CCL28 +56478,EIF4ENIF1 +56479,KCNQ5 +5648,MASP1 +5649,RELN +5650,KLK7 +5651,TMPRSS15 +5652,PRSS8 +56521,DNAJC12 +5653,KLK6 +5654,HTRA1 +56547,MMP26 +56548,CHST7 +5655,KLK10 +5657,PRTN3 +566,AZU1 +5660,PSAP +56603,CYP26B1 +56605,ERO1LB +56606,SLC2A9 +5661,PSBP1 +56616,DIABLO +5662,PSD +56623,INPP5E +56624,ASAH2 +5663,PSEN1 +5664,PSEN2 +56647,BCCIP +56648,EIF5A2 +56649,TMPRSS4 +56650,CLDND1 +56652,C10orf2 +56654,NPDC1 +56655,POLE4 +56656,OR2S2 +56658,TRIM39 +56659,KCNK13 +56660,KCNK12 +56666,PANX2 +56667,MUC13 +56670,SUCNR1 +56672,AKIP1 +56673,C11orf16 +56674,TMEM9B +56675,NRIP3 +56676,ASCL3 +56681,SAR1A +56683,C21orf59 +5669,PSG1 +567,B2M +5670,PSG2 +56704,JPH1 +5671,PSG3 +5672,PSG4 +56729,RETN +5673,PSG5 +56731,SLC2A4RG +5675,PSG6 +56751,BARHL1 +5676,PSG7 +56776,FMN2 +5678,PSG9 +5680,PSG11 +5681,PSKH1 +5682,PSMA1 +56829,ZC3HAV1 +5683,PSMA2 +56832,IFNK +56833,SLAMF8 +56834,GPR137 +5684,PSMA3 +56848,SPHK2 +56849,TCEAL7 +5685,PSMA4 +56850,GRIPAP1 +56851,EMC7 +56852,RAD18 +56853,CELF4 +5686,PSMA5 +5687,PSMA6 +5688,PSMA7 +56882,CDC42SE1 +56884,FSTL5 +56886,UGGT1 +56888,KCMF1 +56889,TM9SF3 +5689,PSMB1 +56890,MDM1 +56891,LGALS14 +56892,C8orf4 +56893,UBQLN4 +56894,AGPAT3 +56895,AGPAT4 +56896,DPYSL5 +56897,WRNIP1 +56898,BDH2 +56899,ANKS1B +5690,PSMB2 +56900,TMEM167B +56901,NDUFA4L2 +56902,PNO1 +56903,PAPOLB +56904,SH3GLB2 +56905,C15orf39 +56906,THAP10 +56907,SPIRE1 +5691,PSMB3 +56910,STARD7 +56911,MAP3K7CL +56912,IFT46 +56913,C1GALT1 +56914,OTOR +56915,EXOSC5 +56916,SMARCAD1 +56917,MEIS3 +56918,C2orf83 +56919,DHX33 +5692,PSMB4 +56920,SEMA3G +56922,MCCC1 +56923,NMUR2 +56924,PAK6 +56925,LXN +56926,NCLN +56927,GPR108 +56928,SPPL2B +56929,FEM1C +5693,PSMB5 +56931,DUS3L +56934,CA10 +56935,SMCO4 +56936,CCDC177 +56937,PMEPA1 +56938,ARNTL2 +5694,PSMB6 +56940,DUSP22 +56941,HMCES +56942,CMC2 +56943,ENY2 +56944,OLFML3 +56945,MRPS22 +56946,C11orf30 +56947,MFF +56948,SDR39U1 +56949,XAB2 +5695,PSMB7 +56950,SMYD2 +56951,C5orf15 +56952,PRTFDC1 +56953,NT5M +56954,NIT2 +56955,MEPE +56956,LHX9 +56957,OTUD7B +5696,PSMB8 +56961,SHD +56963,RGMA +56964,WDR93 +56965,PARP6 +56967,C14orf132 +5697,PYY +56970,ATXN7L3 +56971,CEACAM19 +56975,FAM20C +56977,STOX2 +56978,PRDM8 +56979,PRDM9 +5698,PSMB9 +56980,PRDM10 +56981,PRDM11 +56983,POGLUT1 +56984,PSMG2 +56985,ADPRM +56986,DTWD1 +56987,BBX +5699,PSMB10 +56990,CDC42SE2 +56992,KIF15 +56993,TOMM22 +56994,CHPT1 +56995,TULP4 +56996,SLC12A9 +56997,ADCK3 +56998,CTNNBIP1 +56999,ADAMTS9 +570,BAAT +5700,PSMC1 +57001,SDHAF3 +57002,YAE1D1 +57003,CCDC47 +57007,ACKR3 +5701,PSMC2 +57010,CABP4 +57016,AKR1B10 +57017,COQ9 +57018,CCNL1 +57019,CIAPIN1 +5702,PSMC3 +57020,C16orf62 +57026,PDXP +57030,SLC17A7 +57035,RSRP1 +57037,ANKMY2 +57038,RARS2 +5704,PSMC4 +57045,TWSG1 +57046,HRES2 +57047,PLSCR2 +57048,PLSCR3 +5705,PSMC5 +57050,UTP3 +57053,CHRNA10 +57054,DAZ3 +57055,DAZ2 +57057,TBX20 +5706,PSMC6 +57060,PCBP4 +57062,DDX24 +5707,PSMD1 +5708,PSMD2 +57082,CASC5 +57084,SLC17A6 +57085,AGTRAP +57088,PLSCR4 +57089,ENTPD7 +5709,PSMD3 +57091,CASS4 +57092,PCNP +57093,TRIM49 +57094,CPA6 +57095,PITHD1 +57096,RPGRIP1 +57097,PARP11 +57099,AVEN +571,BACH1 +5710,PSMD4 +57101,ANO2 +57102,C12orf4 +57103,TIGAR +57104,PNPLA2 +57105,CYSLTR2 +57106,NAT14 +57107,PDSS2 +57109,REXO4 +5711,PSMD5 +57110,HRASLS +57111,RAB25 +57113,TRPC7 +57115,PGLYRP4 +57116,ZNF695 +57117,INTS12 +57118,CAMK1D +57119,EPPIN +57120,GOPC +57121,LPAR5 +57122,NUP107 +57124,CD248 +57125,PLXDC1 +57126,CD177 +57127,RHBG +57128,LYRM4 +57129,MRPL47 +5713,PSMD7 +57130,ATP13A1 +57132,CHMP1B +57134,MAN1C1 +57135,DAZ4 +57136,APMAP +57139,RGL3 +5714,PSMD8 +57140,RNPEPL1 +57142,RTN4 +57143,ADCK1 +57144,PAK7 +57146,TMEM159 +57147,SCYL3 +57148,RALGAPB +57149,LYRM1 +5715,PSMD9 +57150,SMIM8 +57151,LYZL6 +57152,SLURP1 +57153,SLC44A2 +57154,SMURF1 +57156,TMEM63C +57157,PHTF2 +57158,JPH2 +57159,TRIM54 +5716,PSMD10 +57161,PELI2 +57162,PELI1 +57165,GJC2 +57167,SALL4 +57168,ASPHD2 +57169,ZNFX1 +5717,PSMD11 +57171,DOLPP1 +57172,CAMK1G +57175,CORO1B +57176,VARS2 +57178,ZMIZ1 +57179,KIAA1191 +5718,PSMD12 +57180,ACTR3B +57181,SLC39A10 +57182,ANKRD50 +57184,FAM219B +57185,NIPAL3 +57186,RALGAPA2 +57187,THOC2 +57188,ADAMTSL3 +57189,KIAA1147 +5719,PSMD13 +57190,SEPN1 +57191,VN1R1 +57192,MCOLN1 +57194,ATP10A +57198,ATP8B2 +572,BAD +5720,PSME1 +57205,ATP10D +57209,ZNF248 +5721,PSME2 +57210,SLC45A4 +57211,ADGRG6 +57213,SPRYD7 +57214,CEMIP +57215,THAP11 +57216,VANGL2 +57217,TTC7A +57221,ARFGEF3 +57222,ERGIC1 +57223,SMEK2 +57224,NHSL1 +57226,LYRM2 +57228,SMAGP +5723,PSPH +57231,SNX14 +57232,ZNF630 +5724,PTAFR +5725,PTBP1 +5726,TAS2R38 +5727,PTCH1 +5728,PTEN +57282,SLC4A10 +5729,PTGDR +57292,KIR2DL5A +573,BAG1 +5730,PTGDS +5731,PTGER1 +5732,PTGER2 +57325,CSRP2BP +57326,PBXIP1 +5733,PTGER3 +57332,CBX8 +57333,RCN3 +57335,ZNF286A +57336,ZNF287 +57337,SENP7 +57338,JPH3 +5734,PTGER4 +57343,ZNF304 +57348,TTYH1 +57369,GJD2 +5737,PTGFR +57379,AICDA +5738,PTGFRN +57380,MRS2 +57381,RHOJ +5739,PTGIR +57393,TMEM27 +57396,CLK4 +574,BAGE +5740,PTGIS +574016,CLLU1OS +57402,S100A14 +574028,CLLU1 +57403,RAB22A +574037,C1orf134 +57404,CYP20A1 +57405,SPC25 +57406,ABHD6 +57407,NMRAL1 +57408,LRTM1 +57409,MIF4GD +5741,PTH +57410,SCYL1 +57412,AS3MT +57413,TMIGD3 +57414,RHBDD2 +57415,C3orf14 +57418,WDR18 +57419,SLC24A3 +5742,PTGS1 +5743,PTGS2 +5744,PTHLH +574414,PRR9 +574431,C1orf147 +57446,NDRG3 +57447,NDRG2 +57448,BIRC6 +57449,PLEKHG5 +5745,PTH1R +57451,TENM2 +57452,GALNT16 +57453,DSCAML1 +574537,UGT2A2 +57455,REXO1 +57456,KIAA1143 +57458,TMCC3 +57459,GATAD2B +5746,PTH2R +57460,PPM1H +57461,ISY1 +57462,KIAA1161 +57463,AMIGO1 +57464,STRIP2 +57465,TBC1D24 +57466,SCAF4 +57467,HHATL +57468,SLC12A5 +57469,PNMAL2 +5747,PTK2 +57470,LRRC47 +57471,ERMN +57472,CNOT6 +57473,ZNF512B +57474,ZNF490 +57475,PLEKHH1 +57476,GRAMD1B +57477,SHROOM4 +57478,USP31 +57479,PRR12 +57480,PLEKHG1 +57481,KIAA1210 +57482,KIAA1211 +57484,RNF150 +57486,NLN +57488,ESYT2 +57489,ODF2L +57491,AHRR +57492,ARID1B +57493,HEG1 +57494,RIMKLB +57495,NWD2 +57496,MKL2 +57497,LRFN2 +57498,KIDINS220 +575,ADGRB1 +57501,KIAA1257 +57502,NLGN4X +57504,MTA3 +57505,AARS2 +57506,MAVS +57507,ZNF608 +57508,INTS2 +57509,MTUS1 +57510,XPO5 +57511,COG6 +57512,GPR158 +57513,CASKIN2 +57514,ARHGAP31 +57515,SERINC1 +57519,STARD9 +57520,HECW2 +57521,RPTOR +57522,SRGAP1 +57523,NYNRIN +57524,CASKIN1 +57526,PCDH19 +57528,KCTD16 +57529,RGAG1 +5753,PTK6 +57530,CGN +57531,HACE1 +57532,NUFIP2 +57533,TBC1D14 +57534,MIB1 +57535,KIAA1324 +57536,KIAA1328 +57537,SORCS2 +57538,ALPK3 +57539,WDR35 +5754,PTK7 +57540,PTCHD2 +57541,ZNF398 +57542,KLHL42 +57544,TXNDC16 +57545,CC2D2A +57546,PDP2 +57547,ZNF624 +57549,IGSF9 +57551,TAOK1 +57552,NCEH1 +57553,MICAL3 +57554,LRRC7 +57555,NLGN2 +57556,SEMA6A +57558,USP35 +57559,STAMBPL1 +5756,TWF1 +57560,IFT80 +57561,ARRDC3 +57562,CEP126 +57563,KLHL8 +57565,KLHL14 +57567,ZNF319 +57568,SIPA1L2 +57569,ARHGAP20 +5757,PTMA +57570,TRMT5 +57571,CARNS1 +57572,DOCK6 +57573,ZNF471 +57574,MARCH4 +57575,PCDH10 +57576,KIF17 +57577,KIAA1407 +57578,UNC79 +57579,FAM135A +57580,PREX1 +57582,KCNT1 +57583,TMEM181 +57584,ARHGAP21 +57585,CRAMP1L +57586,SYT13 +57587,CFAP97 +57589,RIC1 +57590,WDFY1 +57591,MKL1 +57592,ZNF687 +57593,EBF4 +57594,HOMEZ +57595,PDZD4 +57596,BEGAIN +57597,BAHCC1 +57599,WDR48 +576,ADGRB2 +57600,FNIP2 +57602,USP36 +57604,KIAA1456 +57605,PITPNM2 +57606,SLAIN2 +57608,KIAA1462 +57609,DIP2B +57610,RANBP10 +57611,ISLR2 +57613,KIAA1467 +57614,KIAA1468 +57615,ZNF492 +57616,TSHZ3 +57617,VPS18 +57619,SHROOM3 +57620,STIM2 +57621,ZBTB2 +57622,LRFN1 +57623,ZFAT +57624,NYAP2 +57626,KLHL1 +57628,DPP10 +5763,PTMS +57630,SH3RF1 +57631,LRCH2 +57633,LRRN1 +57634,EP400 +57636,ARHGAP23 +57639,CCDC146 +5764,PTN +57642,COL20A1 +57643,ZSWIM5 +57644,MYH7B +57645,POGK +57646,USP28 +57647,DHX37 +57648,KIAA1522 +57649,PHF12 +57650,KIAA1524 +57654,UVSSA +57655,GRAMD1A +57657,HCN3 +57658,CALCOCO1 +57659,ZBTB4 +57661,PHRF1 +57662,CAMSAP3 +57663,USP29 +57664,PLEKHA4 +57665,RDH14 +57666,FBRSL1 +57669,EPB41L5 +57670,KIAA1549 +57673,BEND3 +57674,RNF213 +57677,ZFP14 +57678,GPAM +57679,ALS2 +5768,QSOX1 +57680,CHD8 +57683,ZDBF2 +57684,ZBTB26 +57685,CACHD1 +57687,VAT1L +57688,ZSWIM6 +57689,LRRC4C +57690,TNRC6C +57691,KIAA1586 +57692,MAGEE1 +57693,ZNF317 +57695,USP37 +57696,DDX55 +57697,FANCM +57698,SHTN1 +57699,CPNE5 +577,ADGRB3 +5770,PTPN1 +57700,FAM160B1 +57701,NCKAP5L +57703,CWC22 +57704,GBA2 +57705,WDFY4 +57706,DENND1A +57707,TLDC1 +57708,MIER1 +57709,SLC7A14 +5771,PTPN2 +57710,KIAA1614 +57711,ZNF529 +57713,SFMBT2 +57715,SEMA4G +57716,PRX +57717,PCDHB16 +57718,PPP4R4 +57719,ANO8 +57720,GPR107 +57721,METTL14 +57722,IGDCC4 +57724,EPG5 +57727,NCOA5 +57728,WDR19 +57730,ANKRD36B +57731,SPTBN4 +57732,ZFYVE28 +57733,GBA3 +5774,PTPN3 +5775,PTPN4 +57758,SCUBE2 +57761,TRIB3 +57763,ANKRA2 +5777,PTPN6 +5778,PTPN7 +57786,RBAK +57787,MARK4 +57794,SUGP1 +57795,BRINP2 +57796,DKFZP761C1711 +57798,GATAD1 +57799,RAB40C +578,BAK1 +5780,PTPN9 +57801,HES4 +57804,POLD4 +57805,CCAR2 +5781,PTPN11 +57817,HAMP +57818,G6PC2 +57819,LSM2 +5782,PTPN12 +57820,CCNB1IP1 +57821,CCDC181 +57822,GRHL3 +57823,SLAMF7 +57824,HMHB1 +57826,RAP2C +57827,C6orf47 +57828,CATSPERG +57829,ZP4 +5783,PTPN13 +57830,KRTAP5-8 +57834,CYP4F11 +57835,SLC4A5 +5784,PTPN14 +5786,PTPRA +57862,ZNF410 +57863,CADM3 +57864,SLC46A2 +5787,PTPRB +57876,MUC3B +5788,PTPRC +5789,PTPRD +579,NKX3-2 +5790,PTPRCAP +5791,PTPRE +5792,PTPRF +5793,PTPRG +5794,PTPRH +5795,PTPRJ +5796,PTPRK +5797,PTPRM +5798,PTPRN +5799,PTPRN2 +58,ACTA1 +580,BARD1 +5800,PTPRO +5801,PTPRR +5802,PTPRS +5803,PTPRZ1 +5804,PTPRZ2 +5805,PTS +5806,PTX3 +581,BAX +5810,RAD1 +5813,PURA +5814,PURB +58155,PTBP2 +58157,NGB +58158,NEUROD4 +5816,PVALB +58160,NFE4 +5817,PVR +5818,PVRL1 +58189,WFDC1 +5819,PVRL2 +58190,CTDSP1 +58191,CXCL16 +582,BBS1 +5822,PWP2 +5824,PEX19 +5825,ABCD3 +5826,ABCD4 +5827,PXMP2 +5828,PEX2 +5829,PXN +583,BBS2 +5830,PEX5 +5831,PYCR1 +5832,ALDH18A1 +5833,PCYT2 +5834,PYGB +5836,PYGL +5837,PYGM +58472,SQRDL +58473,PLEKHB1 +58475,MS4A7 +58476,TP53INP2 +58477,SRPRB +58478,ENOPH1 +58480,RHOU +58484,NLRC4 +58485,TRAPPC1 +58486,ZBED5 +58487,CREBZF +58488,PCTP +58489,ABHD17C +58490,RPRD1B +58491,ZNF71 +58492,ZNF77 +58493,INIP +58494,JAM2 +58495,OVOL2 +58496,LY6G5B +58497,PRUNE +58498,MYL7 +58499,ZNF462 +585,BBS4 +58500,ZNF250 +58503,PROL1 +58504,ARHGAP22 +58505,OSTC +58506,SCAF1 +58508,KMT2C +58509,CACTIN +58510,PRODH2 +58511,DNASE2B +58512,DLGAP3 +58513,EPS15L1 +58515,SELK +58516,FAM60A +58517,RBM25 +58524,DMRT3 +58525,WIZ +58526,MID1IP1 +58527,ABRACL +58528,RRAGD +58529,MYOZ1 +58530,LY6G6D +58531,PRM3 +58533,SNX6 +58538,MPP4 +5858,PZP +5859,QARS +586,BCAT1 +5860,QDPR +5861,RAB1A +5862,RAB2A +5863,RGL2 +5864,RAB3A +5865,RAB3B +5866,RAB3IL1 +5867,RAB4A +5868,RAB5A +5869,RAB5B +587,BCAT2 +5870,RAB6A +5871,MAP4K2 +5872,RAB13 +5873,RAB27A +5874,RAB27B +5875,RABGGTA +5876,RABGGTB +5877,RABIF +5878,RAB5C +5879,RAC1 +5880,RAC2 +5881,RAC3 +5883,RAD9A +5884,RAD17 +5885,RAD21 +5886,RAD23A +5887,RAD23B +5888,RAD51 +5889,RAD51C +5890,RAD51B +5891,MOK +5892,RAD51D +5893,RAD52 +5894,RAF1 +5896,RAG1 +5897,RAG2 +5898,RALA +58985,IL22RA1 +58986,TMEM8A +5899,RALB +59,ACTA2 +590,BCHE +5900,RALGDS +5901,RAN +5902,RANBP1 +5903,RANBP2 +5905,RANGAP1 +5906,RAP1A +59067,IL21 +5908,RAP1B +59082,CARD18 +59084,ENPP5 +5909,RAP1GAP +5910,RAP1GDS1 +5911,RAP2A +5912,RAP2B +5913,RAPSN 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+6253,RTN2 +6256,RXRA +6257,RXRB +6258,RXRG +6259,RYK +6261,RYR1 +6262,RYR2 +6263,RYR3 +6264,S7 +6267,S11 +6268,S12 +627,BDNF +6271,S100A1 +6272,SORT1 +6273,S100A2 +6274,S100A3 +6275,S100A4 +6276,S100A5 +6277,S100A6 +6278,S100A7 +6279,S100A8 +6280,S100A9 +6281,S100A10 +6282,S100A11 +6283,S100A12 +6284,S100A13 +6285,S100B +6286,S100P +6288,SAA1 +6289,SAA2 +629,CFB +6291,SAA4 +6293,VPS52 +6294,SAFB +6295,SAG +6296,ACSM3 +6297,SALL2 +6299,SALL1 +6300,MAPK12 +6301,SARS +6302,TSPAN31 +63027,SLC22A23 +6303,SAT1 +63035,BCORL1 +63036,CELA2A +6304,SATB1 +6305,SBF1 +6307,MSMO1 +6309,SC5D +631,BFSP1 +6310,ATXN1 +6311,ATXN2 +6314,ATXN7 +6317,SERPINB3 +6318,SERPINB4 +6319,SCD +632,BGLAP +6320,CLEC11A +6322,SCML1 +6323,SCN1A +6324,SCN1B +6326,SCN2A +6327,SCN2B +6328,SCN3A +6329,SCN4A +633,BGN +6330,SCN4B +6331,SCN5A +6332,SCN7A +6334,SCN8A +6335,SCN9A +6336,SCN10A +6337,SCNN1A +6338,SCNN1B +6339,SCNN1D +634,CEACAM1 +6340,SCNN1G +6341,SCO1 +6342,SCP2 +6343,SCT +6344,SCTR +6345,SRL +6346,CCL1 +6347,CCL2 +6348,CCL3 +6349,CCL3L1 +635,BHMT +6351,CCL4 +6352,CCL5 +6354,CCL7 +6355,CCL8 +6356,CCL11 +6357,CCL13 +6358,CCL14 +6359,CCL15 +636,BICD1 +6360,CCL16 +6361,CCL17 +6362,CCL18 +6363,CCL19 +6364,CCL20 +6366,CCL21 +6367,CCL22 +6368,CCL23 +6369,CCL24 +637,BID +6370,CCL25 +6372,CXCL6 +6373,CXCL11 +6374,CXCL5 +6375,XCL1 +6376,CX3CL1 +638,BIK +6382,SDC1 +63826,SRR +63827,BCAN +6383,SDC2 +6385,SDC4 +6386,SDCBP +6387,CXCL12 +63874,ABHD4 +63875,MRPL17 +63876,PKNOX2 +63877,FAM204A +6388,SDF2 +6389,SDHA +63891,RNF123 +63892,THADA +63893,UBE2O +63894,VIPAS39 +63895,PIEZO2 +63897,HEATR6 +63898,SH2D4A +63899,NSUN3 +639,PRDM1 +6390,SDHB +63901,FAM111A +63904,DUSP21 +63905,MANBAL +63906,GPATCH3 +63908,NAPB +6391,SDHC +63910,SLC17A9 +63915,BLOC1S5 +63916,ELMO2 +63917,GALNT11 +6392,SDHD +63920,ZBED8 +63922,CHTF18 +63923,TNN +63924,CIDEC +63925,ZNF335 +63926,ANKEF1 +63928,CHP2 +63929,XPNPEP3 +63931,MRPS14 +63932,CXorf56 +63933,MCUR1 +63934,ZNF667 +63935,PCIF1 +63939,FAM217B +63940,GPSM3 +63941,NECAB3 +63943,FKBPL +63946,DMRTC2 +63947,DMRTC1 +63948,DMRTB1 +6395,SEA +63950,DMRTA2 +63951,DMRTA1 +6396,SEC13 +63967,CLSPN +6397,SEC14L1 +63970,TP53AIP1 +63971,KIF13A +63973,NEUROG2 +63974,NEUROD6 +63976,PRDM16 +63977,PRDM15 +63978,PRDM14 +63979,FIGNL1 +6398,SECTM1 +63982,ANO3 +6399,TRAPPC2 +640,BLK +6400,SEL1L +64005,MYO1G +6401,SELE +6402,SELL +6403,SELP +6404,SELPLG +6405,SEMA3F +6406,SEMG1 +64061,TSPYL2 +64062,RBM26 +64063,PRSS22 +64064,OXCT2 +64065,PERP +64066,MMP27 +64067,NPAS3 +6407,SEMG2 +64072,CDH23 +64073,C19orf33 +64077,LHPP +64078,SLC28A3 +64080,RBKS +64081,PBLD +64083,GOLPH3 +64084,CLSTN2 +64087,MCCC2 +64089,SNX16 +64090,GAL3ST2 +64091,POPDC2 +64092,SAMSN1 +64093,SMOC1 +64094,SMOC2 +64096,GFRA4 +64097,EPB41L4A +64098,PARVG +641,BLM +64100,ELSPBP1 +64101,LRRC4 +64102,TNMD +64105,CENPK +64106,NPFFR1 +64108,RTP4 +64109,CRLF2 +64110,MAGEF1 +64111,NPVF +64112,MOAP1 +64114,TMBIM1 +64115,C10orf54 +64116,SLC39A8 +64118,DUS1L +64121,RRAGC +64122,FN3K +64123,ADGRL4 +64127,NOD2 +64129,TINAGL1 +64130,LIN7B +64131,XYLT1 +641314,LINC00594 +64132,XYLT2 +641339,ZNF674 +64135,IFIH1 +64137,ABCG4 +641371,ACOT1 +641372,ACOT6 +6414,SEPP1 +64145,RBSN +641455,POTEM +64146,PDF +64147,KIF9 +64149,C17orf75 +6415,SEPW1 +64151,NCAPG +641589,LOC641589 +6416,MAP2K4 +641649,TMEM91 +641654,HEPN1 +64167,ERAP2 +64168,NECAB1 +64170,CARD9 +641700,ECSCR +64172,OSGEPL1 +64174,DPEP2 +64175,P3H1 +6418,SET +64180,DPEP3 +64184,EDDM3B +6419,SETMAR +642,BLMH +64207,IRF2BPL +64208,POPDC3 +6421,SFPQ +64210,MMS19 +64211,LHX5 +64215,DNAJC1 +64216,TFB2M +64218,SEMA4A +64219,PJA1 +6422,SFRP1 +64220,STRA6 +64221,ROBO3 +64222,TOR3A +64223,MLST8 +64224,HERPUD2 +642249,LOC642249 +64225,ATL2 +642273,FAM110C +6423,SFRP2 +64231,MS4A6A +64232,MS4A5 +642326,CCNYL3 +64236,PDLIM2 +6424,SFRP4 +64240,ABCG5 +64241,ABCG8 +642441,LOC642441 +642446,TRIM64B +642475,MROH6 +6425,SFRP5 +642515,LOC642515 +642517,AGAP9 +642574,LOC642574 +642587,MIR205HG +642597,C18orf42 +6426,SRSF1 +642612,TRIM49C +642620,LOC642620 +642623,UBTFL1 +642636,RAD21L1 +642643,LOC642643 +642658,SCX +6427,SRSF2 +642730,LOC642730 +642778,NPIPA3 +642799,NPIPA2 +6428,SRSF3 +64282,PAPD5 +64283,ARHGEF28 +64284,RAB17 +642843,CPSF4L +64285,RHBDF1 +64288,ZSCAN31 +642891,CHL1-AS2 +6429,SRSF4 +642938,FAM196A +642968,FAM163B +642987,TMEM232 +643,CXCR5 +6430,SRSF5 +643008,SMIM5 +643037,C11orf97 +6431,SRSF6 +643155,SMIM15 +643161,FAM25A +64318,NOC3L +64319,FBRS +6432,SRSF7 +64320,RNF25 +64321,SOX17 +643226,GRXCR2 +643236,TMEM72 +64324,NSD1 +643246,MAP1LC3B2 +64326,RFWD2 +64327,LMBR1 +64328,XPO4 +6433,SFSWAP +643311,CT47B1 +643314,KIAA0754 +64332,NFKBIZ +64333,ARHGAP9 +643338,C15orf62 +643355,LOC643355 +643365,LINC00452 +643376,BTBD18 +643382,TMEM253 +643394,SPINK9 +6434,TRA2B +643414,LIPK +643418,LIPN +64342,HS1BP3 +64343,AZI2 +64344,HIF3A +643479,FAM25E +643520,LOC643520 +64359,NXN +643596,RNF224 +643641,ZNF862 +643664,SLC35G6 +643669,CCER2 +643677,CCDC168 +643680,MS4A4E +643699,GOLGA8N +643707,GOLGA6L4 +64374,SIL1 +64375,IKZF4 +64376,IKZF5 +64377,CHST8 +643802,LOC643802 +643803,KRTAP24-1 +643812,KRTAP27-1 +643834,PGA3 +643836,ZFP62 +643847,PGA4 +643853,TMPPE +643854,CTAGE9 +64386,MMP25 +643866,CBLN3 +64388,GREM2 +6439,SFTPB +643904,RNF222 +643905,PRR21 +643911,CRNDE +64393,ZMAT3 +643936,LOC643936 +64395,GMCL1 +643965,TMEM88B +64397,ZNF106 +64398,MPP5 +643988,C1orf233 +64399,HHIP +644,BLVRA +6440,SFTPC +64400,AKTIP +644019,CBWD6 +64403,CDH24 +644041,C18orf63 +64405,CDH22 +644054,FAM25C +644058,LOC644058 +64407,RGS18 +644070,LOC644070 +64409,WBSCR17 +644096,SDHAF1 +6441,SFTPD +64410,KLHL25 +644100,ARL14EPL +64411,ARAP3 +64412,GZF1 +644139,PIRT +644150,WIPF3 +644168,DRGX +64417,C5orf28 +64418,TMEM168 +644186,SYCE3 +64419,MTMR14 +6442,SGCA +64420,SUSD1 +64421,DCLRE1C +644215,LOC644215 +64422,ATG3 +64423,INF2 +644249,LOC644249 +64425,POLR1E +644257,LOC644257 +64426,SUDS3 +64427,TTC31 +644277,LOC644277 +64428,NARFL +64429,ZDHHC6 +6443,SGCB +64430,PCNXL4 +64431,ACTR6 +64432,MRPS25 +64434,NOM1 +644353,ZCCHC18 +644378,GCNT6 +6444,SGCD +644414,DEFB131 +64446,DNAI2 +6445,SGCG +644504,LOC644504 +644524,NKX2-4 +644538,SMIM10 +644591,PPIAL4G +6446,SGK1 +644672,CLDN25 +6447,SCG5 +644717,SAGE2P +64478,CSMD1 +6448,SGSH +644809,C15orf56 +644815,FAM83G +644844,PHGR1 +644890,MEIG1 +6449,SGTA +644943,RASSF10 +644974,ALG1L2 +64499,TPSB2 +644994,SMIM23 +645,BLVRB +6450,SH3BGR +645027,EVPLL +645037,GAGE2B +645051,GAGE13 +64506,CPEB1 +645073,GAGE12G +6451,SH3BGRL +645100,LOC645100 +645104,CLRN2 +645121,CCNI2 +645142,PPIAL4D +645177,LOC645177 +64518,TEKT3 +645191,LINGO3 +6452,SH3BP2 +645202,LOC645202 +645262,LOC645262 +645263,LOC645263 +6453,ITSN1 +645359,PRAMEF26 +645369,TMEM200C +645382,LOC645382 +645402,USP17L4 +645414,PRAMEF19 +645425,PRAMEF20 +645426,TMEM191C +645432,ARRDC5 +6455,SH3GL1 +6456,SH3GL2 +6457,SH3GL3 +645745,MT1HL1 +64577,ALDH8A1 +64579,NDST4 +64581,CLEC7A +645811,CCDC154 +64582,GPR135 +645832,SEBOX +645836,USP17L3 +645840,TXNRD3NB +645843,TMEM14E +645864,MAGEB17 +64591,TSPY2 +645922,S100A7L2 +645961,SPATA31C2 +645974,PABPC1L2B +64598,MOSPD3 +645984,LOC645984 +64599,GIGYF1 +646,BNC1 +64600,PLA2G2F +646000,SLC35G4 +64601,VPS16 +646014,LOC646014 +646019,CBY3 +6461,SHB +646174,C16orf90 +6462,SHBG +646262,LACTBL1 +6464,SHC1 +64641,EBF2 +646424,SPINK8 +64645,HIAT1 +646450,ARIH2OS +646457,C19orf67 +64648,SPANXD +646480,FABP9 +646486,FABP12 +646498,C3orf84 +64651,CSRNP1 +646588,LOC646588 +646603,C4orf51 +646625,URAD +646627,LYPD8 +64663,SPANXC +646643,SBK2 +646658,SYNDIG1L +646670,LOC646670 +646730,LOC646730 +646754,TRIM64C +646767,LOC646767 +646799,ZAR1L +6468,FBXW4 +646817,SETSIP +64682,ANAPC1 +646836,LOC646836 +646851,FAM227A +646862,RNF225 +646865,LOC646865 +64689,GORASP1 +646892,SH2D7 +6469,SHH +646915,ZNF806 +64693,CTAGE1 +646951,FAM188B2 +646960,PRSS56 +646962,HRCT1 +64699,TMPRSS3 +6470,SHMT1 +647020,LOC647020 +647024,C6orf132 +647042,GOLGA6L10 +647060,SPATA31A1 +64708,COPS7B +647087,C7orf73 +64710,NUCKS1 +64711,HS3ST6 +647135,SRGAP2B +64714,PDIA2 +647174,SERPINE3 +64718,UNKL +6472,SHMT2 +647219,ASCL5 +647286,RD3L +6473,SHOX +647309,GMNC +647310,TEX22 +6474,SHOX2 +64743,WDR13 +64744,SMAP2 +64745,METTL17 +64746,ACBD3 +64747,MFSD1 +64748,LPPR2 +64750,SMURF2 +64753,CCDC136 +64754,SMYD3 +64755,C16orf58 +64756,ATPAF1 +64757,MARC1 +647589,ANHX +64759,TNS3 +6476,SI +64760,FAM160B2 +64761,PARP12 +64762,GAREM +64763,ZNF574 +64764,CREB3L2 +64766,S100PBP +64768,IPPK +64769,MEAF6 +6477,SIAH1 +64770,CCDC14 +64771,C6orf106 +64772,ENGASE +64773,PCED1A +64776,C11orf1 +64777,RMND5B +64778,FNDC3B +64779,MTHFSD +6478,SIAH2 +64780,MICAL1 +64781,CERK +64782,AEN +64783,RBM15 +64784,CRTC3 +64785,GINS3 +64786,TBC1D15 +64787,EPS8L2 +64788,LMF1 +64789,EXO5 +64792,IFT22 +64793,CEP85 +64794,DDX31 +64795,RMND5A +64798,DEPTOR +64799,IQCH +648,BMI1 +6480,ST6GAL1 +64800,EFCAB6 +64801,ARV1 +64802,NMNAT1 +648044,LOC648044 +64805,P2RY12 +64806,IL25 +64816,CYP3A43 +6482,ST3GAL1 +6483,ST3GAL2 +64834,ELOVL1 +64837,KLC2 +64838,FNDC4 +64839,FBXL17 +6484,ST3GAL4 +64840,PORCN +64841,GNPNAT1 +64843,ISL2 +64844,MARCH7 +64847,SPATA20 +64848,YTHDC2 +64849,SLC13A3 +64850,ETNPPL +64852,TUT1 +64853,AIDA +64854,USP46 +64855,FAM129B +64856,VWA1 +64857,PLEKHG2 +64858,DCLRE1B +64859,NABP1 +64860,ARMCX5 +64863,METTL4 +64864,RFX7 +64866,CDCP1 +6487,ST3GAL3 +648791,PPP1R3G +64881,PCDH20 +6489,ST8SIA1 +64895,PAPOLG +64897,C12orf43 +649,BMP1 +6490,PMEL +64900,LPIN3 +64901,RANBP17 +64902,AGXT2 +6491,STIL +64919,BCL11B +6492,SIM1 +649201,LOC649201 +64921,CASD1 +64922,LRRC19 +649238,LOC649238 +64924,SLC30A5 +64925,CCDC71 +64926,RASAL3 +64927,TTC23 +64928,MRPL14 +6493,SIM2 +649330,HNRNPCL3 +6494,SIPA1 +64943,NT5DC2 +64946,CENPH +64949,MRPS26 +6495,SIX1 +64951,MRPS24 +6496,SIX3 +64960,MRPS15 +64963,MRPS11 +64965,MRPS9 +64968,MRPS6 +64969,MRPS5 +6497,SKI +64975,MRPL41 +64976,MRPL40 +64978,MRPL38 +649783,LOC649783 +64979,MRPL36 +6498,SKIL +64981,MRPL34 +64983,MRPL32 +6499,SKIV2L +649935,LOC649935 +650,BMP2 +6500,SKP1 +65003,MRPL11 +65005,MRPL9 +65008,MRPL1 +65009,NDRG4 +65010,SLC26A6 +65012,SLC26A10 +65018,PINK1 +6502,SKP2 +650293,LOC650293 +6503,SLA +6504,SLAMF1 +6505,SLC1A1 +65055,REEP1 +65056,GPBP1 +65057,ACD +65059,RAPH1 +6506,SLC1A2 +65061,CDK15 +65062,TMEM237 +65065,NBEAL1 +6507,SLC1A3 +65078,RTN4R +6508,SLC4A3 +65080,MRPL44 +65082,VPS33A +65083,NOL6 +65084,TMEM135 +6509,SLC1A4 +65094,JMJD4 +65095,KRI1 +651,BMP3 +6510,SLC1A5 +65108,MARCKSL1 +65109,UPF3B +6511,SLC1A6 +65110,UPF3A +65117,RSRC2 +6512,SLC1A7 +65121,PRAMEF1 +65122,PRAMEF2 +65123,INTS3 +65124,SOWAHC +65125,WNK1 +6513,SLC2A1 +6514,SLC2A2 +6515,SLC2A3 +6517,SLC2A4 +651746,ANKRD33B +6518,SLC2A5 +6519,SLC3A1 +651959,LOC651959 +652,BMP4 +6520,SLC3A2 +6521,SLC4A1 +65217,PCDH15 +6522,SLC4A2 +65220,NADK +6523,SLC5A1 +6524,SLC5A2 +65243,ZFP69B +65244,SPATS2 +65249,ZSWIM4 +6525,SMTN +65250,C5orf42 +65251,ZNF649 +65258,MPPE1 +6526,SLC5A3 +65260,COA7 +65263,PYCRL +65264,UBE2Z +65265,C8orf33 +65266,WNK4 +65267,WNK3 +65268,WNK2 +6527,SLC5A4 +652764,HPX-2 +6528,SLC5A5 +6529,SLC6A1 +652968,GATSL3 +652991,SKOR2 +653,BMP5 +6530,SLC6A2 +653067,XAGE1E +653073,GOLGA8J +653082,ZDHHC11B +6531,SLC6A3 +653121,ZBTB8A +653125,GOLGA8K +653140,FAM228A +653145,ANXA8 +653149,NBPF6 +653192,TRIM43B +6532,SLC6A4 +653203,FAM230A +653220,XAGE1B +653240,KRTAP4-11 +653247,PRB2 +653269,POTEI +653275,CFC1B +653282,CT47A7 +6533,SLC6A6 +653308,ASAH2B +653319,KIAA0895L +653333,FAM86B2 +653361,NCF1 +653380,LOC653380 +6534,SLC6A7 +653404,FOXD4L6 +653423,SPAG11A +653427,FOXD4L5 +653437,AQP12B +653464,SRGAP2C +653486,SCGB1C2 +653489,RGPD3 +653499,LGALS7B +6535,SLC6A8 +653505,PPIAL4A +653509,SFTPA1 +653519,GPR89A +653541,LOC653541 +653550,TP53TG3C +653567,TMEM236 +653583,PHLDB3 +653598,PPIAL4C +6536,SLC6A9 +653602,LOC653602 +653604,HIST2H3D +653606,PRAMEF22 +653619,PRAMEF15 +653641,GOLGA6C +653643,GOLGA6D +653656,MBD3L4 +653657,MBD3L3 +653659,TMEM183B +653689,GSTT2B +653720,GOLGA8M +653781,POTEJ +653784,MZT2A +6538,SLC6A11 +653808,ZG16 +653820,FAM72B +653857,ACTR3C +6539,SLC6A12 +654,BMP6 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+6751,SSTR1 +6752,SSTR2 +6753,SSTR3 +6754,SSTR4 +6755,SSTR5 +6756,SSX1 +6757,SSX2 +6758,SSX5 +6759,SSX4 +676,BRDT +6760,SS18 +6764,ST5 +6767,ST13 +6768,ST14 +6769,STAC +677,ZFP36L1 +6770,STAR +6772,STAT1 +6773,STAT2 +6774,STAT3 +6775,STAT4 +6776,STAT5A +6777,STAT5B +6778,STAT6 +6779,STATH +678,ZFP36L2 +6780,STAU1 +6781,STC1 +6782,HSPA13 +6783,SULT1E1 +6785,ELOVL4 +6786,STIM1 +6787,NEK4 +6788,STK3 +6789,STK4 +6790,AURKA +6792,CDKL5 +6793,STK10 +6794,STK11 +6795,AURKC +6799,SULT1A2 +680,BRS3 +6801,STRN +6804,STX1A +6809,STX3 +6810,STX4 +6811,STX5 +6812,STXBP1 +6813,STXBP2 +6814,STXBP3 +6815,STYX +6817,SULT1A1 +6818,SULT1A3 +6819,SULT1C2 +682,BSG +6820,SULT2B1 +6821,SUOX +6822,SULT2A1 +6827,SUPT4H1 +6829,SUPT5H +683,BST1 +6830,SUPT6H +6832,SUPV3L1 +6833,ABCC8 +6834,SURF1 +6835,SURF2 +6836,SURF4 +6837,MED22 +6838,SURF6 +6839,SUV39H1 +684,BST2 +6840,SVIL +6843,VAMP1 +6844,VAMP2 +6845,VAMP7 +6846,XCL2 +6847,SYCP1 +685,BTC +6850,SYK +6853,SYN1 +6854,SYN2 +6855,SYP +6856,SYPL1 +6857,SYT1 +686,BTD +6860,SYT4 +6861,SYT5 +6862,T +6863,TAC1 +6865,TACR2 +6866,TAC3 +6867,TACC1 +6868,ADAM17 +6869,TACR1 +687,KLF9 +6870,TACR3 +6871,TADA2A +6872,TAF1 +6873,TAF2 +6874,TAF4 +6875,TAF4B +6876,TAGLN +6877,TAF5 +6878,TAF6 +6879,TAF7 +688,KLF5 +6880,TAF9 +6881,TAF10 +6882,TAF11 +6883,TAF12 +6884,TAF13 +6885,MAP3K7 +6886,TAL1 +6887,TAL2 +6888,TALDO1 +689,BTF3 +6890,TAP1 +6891,TAP2 +6892,TAPBP +6894,TARBP1 +6895,TARBP2 +6897,TARS +6898,TAT +6899,TBX1 +6900,CNTN2 +6901,TAZ +6902,TBCA +6903,TBCC +6904,TBCD +6905,TBCE +6906,SERPINA7 +6907,TBL1X +6908,TBP +6909,TBX2 +6910,TBX5 +6911,TBX6 +6913,TBX15 +6914,TBXA1R +6915,TBXA2R +6916,TBXAS1 +6917,TCEA1 +6919,TCEA2 +6920,TCEA3 +692094,MSMP +6921,TCEB1 +6923,TCEB2 +692312,PPAN-P2RY11 +6924,TCEB3 +6925,TCF4 +6926,TBX3 +6927,HNF1A +6928,HNF1B +6929,TCF3 +6932,TCF7 +6934,TCF7L2 +6935,ZEB1 +6936,GCFC2 +6938,TCF12 +6939,TCF15 +694,BTG1 +6940,ZNF354A +6941,TCF19 +6942,TCF20 +6943,TCF21 +6944,VPS72 +6945,MLX +6947,TCN1 +6948,TCN2 +6949,TCOF1 +695,BTK +6950,TCP1 +6953,TCP10 +6954,TCP11 +6955,TRA +6957,TRB +696,BTN1A1 +6964,TRD +6965,TRG +6975,TECTB +6988,TCTA +699,BUB1 +6990,DYNLT3 +6991,TCTE3 +6992,PPP1R11 +6993,DYNLT1 +6996,TDG +6997,TDGF1 +6999,TDO2 +70,ACTC1 +7001,PRDX2 +7003,TEAD1 +7004,TEAD4 +7005,TEAD3 +7006,TEC +7007,TECTA +7008,TEF +7009,TMBIM6 +701,BUB1B +7010,TEK +7011,TEP1 +7013,TERF1 +7014,TERF2 +7015,TERT +7016,TESK1 +7018,TF +7019,TFAM +7020,TFAP2A +7021,TFAP2B +7022,TFAP2C +7023,TFAP4 +7024,TFCP2 +7025,NR2F1 +7026,NR2F2 +7027,TFDP1 +7029,TFDP2 +7030,TFE3 +7031,TFF1 +7032,TFF2 +7033,TFF3 +7035,TFPI +7036,TFR2 +7037,TFRC +7038,TG +7039,TGFA +7040,TGFB1 +7041,TGFB1I1 +7042,TGFB2 +7043,TGFB3 +7044,LEFTY2 +7045,TGFBI +7046,TGFBR1 +7047,TGM4 +7048,TGFBR2 +7049,TGFBR3 +705,BYSL +7050,TGIF1 +7051,TGM1 +7052,TGM2 +7053,TGM3 +7054,TH +7056,THBD +7057,THBS1 +7058,THBS2 +7059,THBS3 +706,TSPO +7060,THBS4 +7062,TCHH +7064,THOP1 +7066,THPO +7067,THRA +7068,THRB +7069,THRSP +7070,THY1 +7071,KLF10 +7072,TIA1 +7073,TIAL1 +7074,TIAM1 +7075,TIE1 +7076,TIMP1 +7077,TIMP2 +7078,TIMP3 +7079,TIMP4 +708,C1QBP +7080,NKX2-1 +7082,TJP1 +7083,TK1 +7084,TK2 +7086,TKT +7087,ICAM5 +7088,TLE1 +7089,TLE2 +7090,TLE3 +7091,TLE4 +7092,TLL1 +7093,TLL2 +7094,TLN1 +7095,SEC62 +7096,TLR1 +7097,TLR2 +7098,TLR3 +7099,TLR4 +71,ACTG1 +710,SERPING1 +7100,TLR5 +7101,NR2E1 +7102,TSPAN7 +7103,TSPAN8 +7104,TM4SF4 +7105,TSPAN6 +7106,TSPAN4 +7107,GPR137B +7108,TM7SF2 +7109,TRAPPC10 +7110,TMF1 +7111,TMOD1 +7112,TMPO +7113,TMPRSS2 +7114,TMSB4X +712,C1QA +7122,CLDN5 +7123,CLEC3B +7124,TNF +7125,TNNC2 +7126,TNFAIP1 +7127,TNFAIP2 +7128,TNFAIP3 +713,C1QB +7130,TNFAIP6 +7132,TNFRSF1A +7133,TNFRSF1B +7134,TNNC1 +7135,TNNI1 +7136,TNNI2 +7137,TNNI3 +7138,TNNT1 +7139,TNNT2 +714,C1QC +7140,TNNT3 +7141,TNP1 +7142,TNP2 +7143,TNR +7145,TNS1 +7148,TNXB +715,C1R +7150,TOP1 +7153,TOP2A +7155,TOP2B +7156,TOP3A +7157,TP53 +7158,TP53BP1 +7159,TP53BP2 +716,C1S +7161,TP73 +7162,TPBG +7163,TPD52 +7164,TPD52L1 +7165,TPD52L2 +7166,TPH1 +7167,TPI1 +7168,TPM1 +7169,TPM2 +717,C2 +7170,TPM3 +7171,TPM4 +7172,TPMT +7173,TPO +7174,TPP2 +7175,TPR +7177,TPSAB1 +7178,TPT1 +7179,TPTE +718,C3 +7180,CRISP2 +7181,NR2C1 +7182,NR2C2 +7184,HSP90B1 +7185,TRAF1 +7186,TRAF2 +7187,TRAF3 +7188,TRAF5 +7189,TRAF6 +719,C3AR1 +72,ACTG2 +720,C4A +7200,TRH +7201,TRHR +7203,CCT3 +7204,TRIO +7205,TRIP6 +721,C4B +7216,TRO +722,C4BPA +7220,TRPC1 +7222,TRPC3 +7223,TRPC4 +7224,TRPC5 +7225,TRPC6 +7226,TRPM2 +7227,TRPS1 +723790,HIST2H2AA4 +723961,INS-IGF2 +724066,ATXN8 +7247,TSN +7248,TSC1 +7249,TSC2 +725,C4BPB +7251,TSG101 +7252,TSHB +7253,TSHR +7254,TSHRL1 +7255,TSHRL2 +7256,TSHRL3 +7257,TSNAX +7258,TSPY1 +7259,TSPYL1 +726,CAPN5 +7260,TSSC1 +7262,PHLDA2 +7263,TST +7264,TSTA3 +7265,TTC1 +7266,DNAJC7 +7267,TTC3 +7268,TTC4 +727,C5 +7270,TTF1 +7272,TTK +7273,TTN +7274,TTPA +7275,TUB +7276,TTR +727684,C1orf195 +7277,TUBA4A +7278,TUBA3C +727800,RNF208 +727830,SPATA31A3 +727832,GOLGA6L6 +727837,SSX2B +727851,RGPD8 +727857,BHLHA9 +727866,FAM156B +727897,MUC5B +727905,SPATA31A5 +727910,TLCD2 +727936,GXYLT2 +727940,RHOXF2B +727957,MROH1 +727961,LOC727961 +728,C5AR1 +7280,TUBB2A +728013,CBWD7 +728026,LOC728026 +728036,CT47A10 +728042,CT47A9 +728047,GOLGA8O +728049,CT47A8 +728062,CT47A6 +728072,CT47A5 +728075,CT47A4 +728082,CT47A3 +728090,CT47A2 +728096,CT47A1 +728100,LOC728100 +728113,ANXA8L1 +728116,ZBTB8B +728118,NUTM2A +728137,TSPY3 +728194,RSPH10B2 +728215,FAM155A +728224,KRTAP4-8 +728229,TMEM191B +728239,MAGED4 +728255,KRTAP1-4 +728262,FAM157A +728269,MAGEA9B +728276,CLEC19A +728279,KRTAP2-2 +728294,D2HGDH +728299,KRTAP19-8 +7283,TUBG1 +728318,KRTAP9-1 +728340,GTF2H2C +728343,NXF2B +728358,DEFA1B +728361,OVOL3 +728369,USP17L24 +728373,USP17L25 +728375,LOC728375 +728378,POTEF +728379,USP17L26 +728386,USP17L5 +728392,LOC728392 +728393,USP17L27 +728395,TSPY4 +7284,TUFM +728400,USP17L28 +728403,TSPY8 +728405,USP17L29 +728419,USP17L30 +728441,GGT2 +728458,OPN1MW2 +728464,METTL24 +728485,LOC728485 +728489,DNLZ +728492,SERF1B +728498,GOLGA8H +728568,C12orf73 +728577,CNTNAP3B +728588,MS4A18 +728591,CCDC169 +728597,DCDC2C +7286,TUFT1 +728621,CCDC30 +728635,DHRS4L1 +728637,MEIKIN +728642,CDK11A +728656,DMRTC1B +728661,SLC35E2B +728689,EIF3CL +728695,SPANXB1 +7287,TULP1 +728712,SPANXA2 +728715,LOC728715 +728734,NPIPB8 +728741,NPIPB6 +728747,ANKRD20A4 +728763,CROCC2 +728780,ANKDD1B +7288,TULP2 +728819,C1GALT1C1L +728833,FAM72D +728841,NBPF8 +728858,C12orf71 +728888,NPIPB11 +7289,TULP3 +728911,CT45A2 +728927,ZNF736 +728929,TCEB3CL +728945,PPIAL4F +728955,FAM25D +728957,ZNF705D +729,C6 +7290,HIRA +729020,RPEL1 +729025,SLC15A5 +729059,C1orf234 +729085,FAM198A +729092,AGAP5 +7291,TWIST1 +729159,LOC729159 +7292,TNFSF4 +729201,SPACA5B +729220,FLJ45513 +729230,CCR2 +729233,PRR20B +729238,SFTPA2 +729240,PRR20C +729246,PRR20D +729250,PRR20E +729254,LOC729254 +729262,NUTM2B +729264,TP53TG3D +729268,LOC729268 +729288,ZNF286B +7293,TNFRSF4 +729330,OC90 +729353,LOC729353 +729355,TP53TG3B +729359,PLIN4 +729384,TRIM49D2 +729396,GAGE12J +7294,TXK +729408,GAGE2D +729420,LMO7DN +729422,GAGE12C +729428,GAGE12B +729431,GAGE12E +729438,GATSL2 +729440,CCDC61 +729442,GAGE12H +729447,GAGE2A +729458,LOC729458 +729461,LOC729461 +729468,LOC729468 +729475,RAD51AP2 +7295,TXN +729515,TMEM242 +729528,PRAMEF14 +729533,FAM72A +729540,RGPD6 +729545,LOC729545 +729574,FAM231A +729587,FAM231C +729597,SPDYE6 +7296,TXNRD1 +729627,PRR23A +729648,ZNF812 +729665,CCDC175 +729696,LOC729696 +7297,TYK2 +729722,LOC729722 +729747,ZNF878 +729756,PRSS44 +729759,OR4F29 +729767,CEACAM18 +7298,TYMS +729800,LOC729800 +729830,FAM160A1 +729852,UMAD1 +729857,RGPD2 +729873,TBC1D3 +729877,TBC1D3H +7299,TYR +729920,ISPD +729956,SHISA7 +729967,MORN2 +729974,RFPL4AL1 +729991,MEF2BNB +729993,SHISA9 +730,C7 +730005,SEC14L6 +730051,ZNF814 +730087,ZNF726 +730094,C16orf52 +7301,TYRO3 +730112,FAM166B +730130,TMEM229A +730159,LOC730159 +730183,LOC730183 +730249,IRG1 +730262,PPIAL4E +730268,LOC730268 +730291,ZNF735 +730394,GTF2H2C_2 +7305,TYROBP +7306,TYRP1 +7307,U2AF1 +730755,KRTAP2-3 +731,C8A +7311,UBA52 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+8345,HIST1H2BH +83450,LRRC48 +83451,ABHD11 +83452,RAB33B +8346,HIST1H2BI +83460,EMC6 +83461,CDCA3 +83463,MXD3 +83464,APH1B +83468,GLT8D2 +8347,HIST1H2BC +83473,KATNAL2 +83475,DOHH +83478,ARHGAP24 +83479,DDX59 +8348,HIST1H2BO +83480,PUS3 +83481,EPPK1 +83482,SCRT1 +83483,PLVAP +8349,HIST2H2BE +835,CASP2 +8350,HIST1H3A +8351,HIST1H3D +8352,HIST1H3C +8353,HIST1H3E +83538,TTC25 +83539,CHST9 +8354,HIST1H3I +83540,NUF2 +83541,FAM110A +83543,AIF1L +83544,DNAL1 +83546,RTBDN +83547,RILP +83548,COG3 +83549,UCK1 +8355,HIST1H3G +83550,GPR101 +83551,TAAR8 +83552,MFRP +8356,HIST1H3J +8357,HIST1H3H +8358,HIST1H3B +8359,HIST1H4A +83590,TMUB1 +83591,THAP2 +83592,AKR1E2 +83593,RASSF5 +83594,NUDT12 +83595,SOX7 +83596,BCL2L12 +83597,RTP3 +836,CASP3 +8360,HIST1H4D +83604,TMEM47 +83605,CCM2 +83606,GUCD1 +83607,AMMECR1L +83608,C18orf21 +8361,HIST1H4F +8362,HIST1H4K +8363,HIST1H4J +83636,C19orf12 +83637,ZMIZ2 +83638,C11orf68 +83639,TEX101 +8364,HIST1H4C +83640,FAM103A1 +83641,FAM107B +83642,SELO +83643,CCDC3 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+995,CDC25C +9950,GOLGA5 +9951,HS3ST4 +9953,HS3ST3B1 +9955,HS3ST3A1 +9956,HS3ST2 +9957,HS3ST1 +9958,USP15 +996,CDC27 +9960,USP3 +9961,MVP +9962,SLC23A2 +9963,SLC23A1 +9965,FGF19 +9966,TNFSF15 +9967,THRAP3 +9968,MED12 +9969,MED13 +997,CDC34 +9970,NR1I3 +9971,NR1H4 +9972,NUP153 +9973,CCS +9975,NR1D2 +9976,CLEC2B +9978,RBX1 +998,CDC42 +9980,DOPEY2 +9982,FGFBP1 +9984,THOC1 +9985,REC8 +9986,RCE1 +9987,HNRNPDL +9988,DMTF1 +9989,PPP4R1 +999,CDH1 +9990,SLC12A6 +9991,PTBP3 +9992,KCNE2 +9993,DGCR2 +9994,CASP8AP2 +9997,SCO2 diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/metapaths.csv b/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/metapaths.csv new file mode 100644 index 0000000..bf2d61a --- /dev/null +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/metapaths.csv @@ -0,0 +1,53 @@ +metapath +BPpG +BPpGcG +BPpGiG +BPpGG +BPpGdAdG +BPpGdAeG +BPpGdAuG +BPpGeAdG +BPpGeAeG +BPpGeAuG +BPpGuAdG +BPpGuAeG +BPpGuAuG +BPpGpBPpG +BPpGpCCpG +BPpGbCbG +BPpGbCdG +BPpGbCuG +BPpGdCbG +BPpGdCdG +BPpGdCuG +BPpGuCbG +BPpGuCdG +BPpGuCuG +BPpGaDaG +BPpGaDdG +BPpGaDuG +BPpGdDaG +BPpGdDdG +BPpGdDuG +BPpGuDaG +BPpGuDdG +BPpGuDuG +BPpGcGcG +BPpGcGiG +BPpGcGG +BPpGiGcG +BPpGiGiG +BPpGiGG +BPpGG +BPpGr>GcG +BPpGr>GiG +BPpGr>GGr>G +BPpGpMFpG +BPpGpPWpG diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/metapaths_ignore.csv b/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/metapaths_ignore.csv new file mode 100644 index 0000000..6122975 --- /dev/null +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/sources/metapaths_ignore.csv @@ -0,0 +1,6 @@ +metapath +BPpG +BPpGcG +BPpGiG +BPpGG diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb new file mode 100644 index 0000000..bcb839e --- /dev/null +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb @@ -0,0 +1,492 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "id": "5fc183d5-7a0d-4a1a-b0b5-c87a5f54214b", + "metadata": {}, + "source": [ + "# Biological Process and Gene Metapath Data Gathering\n", + "\n", + "- Each value from `BP.csv` is a source and each value from `Gene.csv` is a target. \n", + "- Each source + target pairing may have a metapath which is found within `metapaths.csv`.\n", + "- For each pair metapath we need the DWPC and p-value stored in a table for reference.\n", + "- Ignore metapaths found within `metapaths_ignore.csv`." + ] + }, + { + "cell_type": "code", + "execution_count": 33, + "id": "cb23bdc3-241a-47e0-8016-0533730762b6", + "metadata": {}, + "outputs": [], + "source": [ + "import pathlib\n", + "from itertools import product\n", + "from typing import Generator, Iterator, Tuple\n", + "\n", + "import lancedb\n", + "import pyarrow as pa\n", + "import pyarrow.csv as csv\n", + "\n", + "import hetionet_utils.database" + ] + }, + { + "cell_type": "code", + "execution_count": 34, + "id": "dcfec16f-7ca2-46a0-af99-149753bed7d6", + "metadata": {}, + "outputs": [], + "source": [ + "# create results folder\n", + "pathlib.Path(\"data/results\").mkdir(exist_ok=True)\n", + "\n", + "# Initialize your LanceDB database and table\n", + "db = lancedb.connect(\"data/results/bioprocess_and_gene_metapaths\")\n", + "table_name = \"bioprocess_gene_metapath_combinations\"\n", + "\n", + "# If the table does not exist, create it with an initial empty DataFrame\n", + "if table_name not in db.table_names():\n", + " db.create_table(\n", + " table_name, pd.DataFrame(columns=[\"source_id\", \"target_id\", \"metapath\"])\n", + " )\n", + "\n", + "table = db.open_table(table_name)" + ] + }, + { + "cell_type": "code", + "execution_count": 35, + "id": "33492577-2f44-404f-b866-f76a54de28ba", + "metadata": {}, + "outputs": [], + "source": [ + "def load_arrow_table(file_path: str, column_name: str) -> pa.Table:\n", + " \"\"\"Loads a single-column Arrow Table from a CSV file.\n", + "\n", + " Args:\n", + " file_path (str): The path to the CSV file.\n", + " column_name (str): The name of the column to extract.\n", + "\n", + " Returns:\n", + " pa.Table: Arrow Table with the specified column.\n", + " \"\"\"\n", + " table = csv.read_csv(file_path)\n", + " return table.select([column_name])\n", + "\n", + "\n", + "def generate_combinations(\n", + " table_bioprocesses: pa.Table, table_genes: pa.Table, table_metapaths: pa.Table\n", + ") -> Generator[Tuple[str, str, str], None, None]:\n", + " \"\"\"Generates all possible combinations of IDs from three Arrow tables.\n", + "\n", + " Args:\n", + " table_bioprocesses (pa.Table): Arrow Table containing bioprocess IDs in an 'id' column.\n", + " table_genes (pa.Table): Arrow Table containing gene IDs in an 'id' column.\n", + " table_metapaths (pa.Table): Arrow Table containing metapath values in a 'metapath' column.\n", + "\n", + " Yields:\n", + " Tuple[str, str, str]: A tuple with a bioprocess ID, a gene ID, and a metapath value.\n", + " \"\"\"\n", + " for combo in product(\n", + " table_bioprocesses[\"id\"].to_pylist(),\n", + " table_genes[\"id\"].to_pylist(),\n", + " table_metapaths[\"metapath\"].to_pylist(),\n", + " ):\n", + " yield combo\n", + "\n", + "\n", + "def process_in_chunks(\n", + " generator: Iterator[Tuple[str, str, str]], chunk_size: int = 1000\n", + ") -> Iterator[pa.Table]:\n", + " \"\"\"Processes combinations from a generator in smaller chunks as Arrow Tables.\n", + "\n", + " Args:\n", + " generator (Iterator[Tuple[str, str, str]]): A generator that yields tuples of combinations.\n", + " chunk_size (int, optional): The number of rows per chunk. Defaults to 1000.\n", + "\n", + " Yields:\n", + " pa.Table: An Arrow Table containing a chunk of combinations with columns ['source_id', 'target_id', 'metapath'].\n", + " \"\"\"\n", + " chunk = []\n", + " for i, combo in enumerate(generator):\n", + " # Convert each combination to a tuple of strings to avoid None values\n", + " combo = tuple(str(x) if x is not None else \"\" for x in combo)\n", + " chunk.append(combo)\n", + "\n", + " if (i + 1) % chunk_size == 0:\n", + " # Create Arrow Table from the chunk\n", + " yield pa.table(\n", + " {\n", + " \"source_id\": [row[0] for row in chunk],\n", + " \"target_id\": [row[1] for row in chunk],\n", + " \"metapath\": [row[2] for row in chunk],\n", + " }\n", + " )\n", + " chunk = []\n", + "\n", + " # Yield any remaining combinations as an Arrow Table\n", + " if chunk:\n", + " yield pa.table(\n", + " {\n", + " \"source_id\": [row[0] for row in chunk],\n", + " \"target_id\": [row[1] for row in chunk],\n", + " \"metapath\": [row[2] for row in chunk],\n", + " }\n", + " )" + ] + }, + { + "cell_type": "code", + "execution_count": 36, + "id": "22142383-8ae8-4c3a-b5ac-17c9f2dfc409", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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metapath
5BPpGdAdG
6BPpGdAeG
7BPpGdAuG
8BPpGeAdG
9BPpGeAeG
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" + ], + "text/plain": [ + " metapath\n", + "5 BPpGdAdG\n", + "6 BPpGdAeG\n", + "7 BPpGdAuG\n", + "8 BPpGeAdG\n", + "9 BPpGeAeG" + ] + }, + "execution_count": 36, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# gather metapaths which are not in the metapaths_ignore.csv\n", + "df_metapaths = pd.read_csv(\"data/sources/metapaths.csv\")\n", + "df_metapaths_ignore = pd.read_csv(\"data/sources/metapaths_ignore.csv\")\n", + "df_metapaths = df_metapaths[\n", + " ~df_metapaths[\"metapath\"].isin(df_metapaths_ignore[\"metapath\"])\n", + "]\n", + "df_metapaths.head()" + ] + }, + { + "cell_type": "code", + "execution_count": 37, + "id": "e228fb04-ba5c-4e44-b5bd-aa1f7816ea5b", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "bioprocesses:\n", + " id name\n", + "0 GO:0000002 mitochondrial genome maintenance\n", + "1 GO:0000012 single strand break repair\n", + "2 GO:0000018 regulation of DNA recombination\n", + "3 GO:0000019 regulation of mitotic recombination\n", + "4 GO:0000022 mitotic spindle elongation \n", + "\n", + " genes:\n", + " id name\n", + "0 1 A1BG\n", + "1 10 NAT2\n", + "2 100 ADA\n", + "3 1000 CDH2\n", + "4 10000 AKT3\n" + ] + } + ], + "source": [ + "# read the biological processes and genes\n", + "df_bioprocesses = pd.read_csv(\"data/sources/BP.csv\")\n", + "df_genes = pd.read_csv(\"data/sources/Gene.csv\")\n", + "\n", + "print(\"bioprocesses:\\n\", df_bioprocesses.head(), \"\\n\\n\", \"genes:\\n\", df_genes.head())" + ] + }, + { + "cell_type": "code", + "execution_count": 49, + "id": "1b75acd4-2bb3-4adf-a851-d758e75b22b6", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Adding chunk 1\n", + "\n", + "source_id: string\n", + "target_id: string\n", + "metapath: string\n" + ] + }, + { + "ename": "ArrowNotImplementedError", + "evalue": "Unsupported cast from string to null using function cast_null", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mArrowNotImplementedError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[49], line 16\u001b[0m\n\u001b[1;32m 14\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;28mtype\u001b[39m(chunk_table))\n\u001b[1;32m 15\u001b[0m \u001b[38;5;28mprint\u001b[39m(chunk_table\u001b[38;5;241m.\u001b[39mschema)\n\u001b[0;32m---> 16\u001b[0m \u001b[43mtable\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43madd\u001b[49m\u001b[43m(\u001b[49m\u001b[43mchunk_table\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 17\u001b[0m count \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;241m1\u001b[39m\n\u001b[1;32m 18\u001b[0m \u001b[38;5;28;01mbreak\u001b[39;00m\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1509\u001b[0m, in \u001b[0;36mLanceTable.add\u001b[0;34m(self, data, mode, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 1485\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m\"\"\"Add data to the table.\u001b[39;00m\n\u001b[1;32m 1486\u001b[0m \u001b[38;5;124;03mIf vector columns are missing and the table\u001b[39;00m\n\u001b[1;32m 1487\u001b[0m \u001b[38;5;124;03mhas embedding functions, then the vector columns\u001b[39;00m\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 1506\u001b[0m \u001b[38;5;124;03m The number of vectors in the table.\u001b[39;00m\n\u001b[1;32m 1507\u001b[0m \u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m 1508\u001b[0m \u001b[38;5;66;03m# TODO: manage table listing and metadata separately\u001b[39;00m\n\u001b[0;32m-> 1509\u001b[0m data, _ \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_data\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 1510\u001b[0m \u001b[43m \u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1511\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1512\u001b[0m \u001b[43m \u001b[49m\u001b[43mmetadata\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmetadata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1513\u001b[0m \u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1514\u001b[0m \u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mfill_value\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1515\u001b[0m \u001b[43m\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 1516\u001b[0m \u001b[38;5;66;03m# Access the dataset_mut property to ensure that the dataset is mutable.\u001b[39;00m\n\u001b[1;32m 1517\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_ref\u001b[38;5;241m.\u001b[39mdataset_mut\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:154\u001b[0m, in \u001b[0;36m_sanitize_data\u001b[0;34m(data, schema, metadata, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 151\u001b[0m data \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mreplace_schema_metadata(metadata)\n\u001b[1;32m 153\u001b[0m \u001b[38;5;66;03m# TODO improve the logics in _sanitize_schema\u001b[39;00m\n\u001b[0;32m--> 154\u001b[0m data \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_schema\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 155\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m schema \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[1;32m 156\u001b[0m schema \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mschema\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:2033\u001b[0m, in \u001b[0;36m_sanitize_schema\u001b[0;34m(data, schema, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 2024\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m field\u001b[38;5;241m.\u001b[39mname \u001b[38;5;129;01min\u001b[39;00m data\u001b[38;5;241m.\u001b[39mcolumn_names \u001b[38;5;129;01mand\u001b[39;00m (\n\u001b[1;32m 2025\u001b[0m likely_vector_col \u001b[38;5;129;01mor\u001b[39;00m is_default_vector_col\n\u001b[1;32m 2026\u001b[0m ):\n\u001b[1;32m 2027\u001b[0m data \u001b[38;5;241m=\u001b[39m _sanitize_vector_column(\n\u001b[1;32m 2028\u001b[0m data,\n\u001b[1;32m 2029\u001b[0m vector_column_name\u001b[38;5;241m=\u001b[39mfield\u001b[38;5;241m.\u001b[39mname,\n\u001b[1;32m 2030\u001b[0m on_bad_vectors\u001b[38;5;241m=\u001b[39mon_bad_vectors,\n\u001b[1;32m 2031\u001b[0m fill_value\u001b[38;5;241m=\u001b[39mfill_value,\n\u001b[1;32m 2032\u001b[0m )\n\u001b[0;32m-> 2033\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43mpa\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mTable\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mfrom_arrays\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 2034\u001b[0m \u001b[43m \u001b[49m\u001b[43m[\u001b[49m\u001b[43mdata\u001b[49m\u001b[43m[\u001b[49m\u001b[43mname\u001b[49m\u001b[43m]\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43;01mfor\u001b[39;49;00m\u001b[43m \u001b[49m\u001b[43mname\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;129;43;01min\u001b[39;49;00m\u001b[43m \u001b[49m\u001b[43mschema\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mnames\u001b[49m\u001b[43m]\u001b[49m\u001b[43m,\u001b[49m\u001b[43m 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"File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:593\u001b[0m, in \u001b[0;36mpyarrow.lib.ChunkedArray.cast\u001b[0;34m()\u001b[0m\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/compute.py:405\u001b[0m, in \u001b[0;36mcast\u001b[0;34m(arr, target_type, safe, options, memory_pool)\u001b[0m\n\u001b[1;32m 403\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m 404\u001b[0m options \u001b[38;5;241m=\u001b[39m CastOptions\u001b[38;5;241m.\u001b[39msafe(target_type)\n\u001b[0;32m--> 405\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43mcall_function\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mcast\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43m[\u001b[49m\u001b[43marr\u001b[49m\u001b[43m]\u001b[49m\u001b[43m,\u001b[49m\u001b[43m 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string to null using function cast_null" + ] + } + ], + "source": [ + "# Load input CSV files into Arrow Tables\n", + "table_bioprocesses = load_arrow_table(\"data/sources/BP.csv\", \"id\")\n", + "table_genes = load_arrow_table(\"data/sources/Gene.csv\", \"id\")\n", + "table_metapaths = pa.Table.from_pandas(df_metapaths)\n", + "\n", + "# Generate combinations\n", + "generator = generate_combinations(table_bioprocesses, table_genes, table_metapaths)\n", + "\n", + "count = 1\n", + "# Process and print chunks\n", + "for chunk_table in process_in_chunks(generator):\n", + " # add the chunk to the table\n", + " print(f\"Adding chunk {count}\")\n", + " print(type(chunk_table))\n", + " print(chunk_table.schema)\n", + " table.add(chunk_table)\n", + " count += 1\n", + " break" + ] + }, + { + "cell_type": "code", + "execution_count": 47, + "id": "a3f235a7-e777-4252-82fc-a71c1c284abd", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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source_idtarget_idmetapath
0GO:00000021BPpGdAdG
1GO:00000021BPpGdAeG
2GO:00000021BPpGdAuG
3GO:00000021BPpGeAdG
4GO:00000021BPpGeAeG
............
95GO:0000002100BPpGdAeG
96GO:0000002100BPpGdAuG
97GO:0000002100BPpGeAdG
98GO:0000002100BPpGeAeG
99GO:0000002100BPpGeAuG
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100 rows × 3 columns

\n", + "
" + ], + "text/plain": [ + " source_id target_id metapath\n", + "0 GO:0000002 1 BPpGdAdG\n", + "1 GO:0000002 1 BPpGdAeG\n", + "2 GO:0000002 1 BPpGdAuG\n", + "3 GO:0000002 1 BPpGeAdG\n", + "4 GO:0000002 1 BPpGeAeG\n", + ".. ... ... ...\n", + "95 GO:0000002 100 BPpGdAeG\n", + "96 GO:0000002 100 BPpGdAuG\n", + "97 GO:0000002 100 BPpGeAdG\n", + "98 GO:0000002 100 BPpGeAeG\n", + "99 GO:0000002 100 BPpGeAuG\n", + "\n", + "[100 rows x 3 columns]" + ] + }, + "execution_count": 47, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "chunk_df" + ] + }, + { + "cell_type": "code", + "execution_count": 18, + "id": "a04d5361-6ef1-48c1-8a58-50986d8f63ff", + "metadata": {}, + "outputs": [], + "source": [ + "chunk_df.to_csv(\"testing.csv\")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "828431ff-398c-4c23-9fa7-f65a3925597e", + "metadata": {}, + "outputs": [], + "source": [ + "# After inserting all chunks, show the shape of the table\n", + "num_rows = table.count()\n", + "num_columns = len(table.schema().names)\n", + "\n", + "print(f\"Table shape: ({num_rows}, {num_columns})\")" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.5" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/readme.md b/src/bioprocess_metapath_to_gene_pval_and_dwpc/readme.md new file mode 100644 index 0000000..4e853df --- /dev/null +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/readme.md @@ -0,0 +1,6 @@ +# Biological Process and Gene Metapath Data Gathering + +- Each value from `BP.csv` is a source and each value from `Gene.csv` is a target. +- Each source + target pairing may have a metapath which is found within `metapaths.csv`. +- For each pair metapath we need the DWPC and p-value stored in a table for reference. +- Ignore metapaths found within `metapaths_ignore.csv`. diff --git a/src/hetionet_utils/database.py b/src/hetionet_utils/database.py new file mode 100644 index 0000000..be1fa2a --- /dev/null +++ b/src/hetionet_utils/database.py @@ -0,0 +1,102 @@ +""" +Modules for interacting with various databases. +""" + +from neo4j import GraphDatabase +from typing import List +import pandas as pd +import requests + + +class HetionetNeo4j: + """ + A class to interact with the Hetionet Neo4j database. + + Attributes: + driver (neo4j.Driver): + The Neo4j driver for database connection. + query_node_identifier_to_neo4j_id (str): + The Cypher query to get Neo4j ID from a node identifier. + """ + + def __init__(self, uri="bolt://neo4j.het.io:7687", user="neo4j", password="neo4j"): + """ + Initialize the HetionetNeo4j class with a connection + to the Neo4j database. + + Args: + uri (str): + The URI of the Neo4j database. + user (str): + The username for the Neo4j database. + password (str): + The password for the Neo4j database. + """ + self.driver = GraphDatabase.driver(uri, auth=(user, password)) + self.query_node_identifier_to_neo4j_id = """ + MATCH (node) + WHERE + node.identifier = $identifier + RETURN + id(node) AS neo4j_id, + node.identifier AS identifier + ORDER BY neo4j_id + """ + self.api_base_path = "https://search-api.het.io/v1" + + def close(self): + """ + Close the connection to the Neo4j database. + """ + self.driver.close() + + def run_query(self, query: str, parameters: dict = None) -> List[dict]: + """ + Run a Cypher query against the Neo4j database. + + Args: + query (str): + The Cypher query to run. + parameters (dict, optional): + The parameters for the Cypher query. + Default is None. + + Returns: + List[dict]: + A list of dictionaries containing the + query results with keys "neo4j_id" and "identifier". + """ + with self.driver.session() as session: + result = session.run(query, parameters) + return list(result) + + def get_id_from_identifer(self, identifier: str) -> int: + """ + Get the Neo4j ID of a node from its identifier. + + Args: + identifier (str): + The identifier of the node. + + Returns: + int: + The Neo4j ID of the node. + """ + + return self.run_query( + query=self.query_node_identifier_to_neo4j_id, + parameters={"identifier": identifier}, + )[0]["neo4j_id"] + + def get_metapath_data(self, source_id: str, target_id: str, metapath: str) -> pd.DataFrame: + """ + Gathers metapath data from Hetionet via REST API. + """ + + url = ( + f"{self.api_base_path}/paths/source/{self.get_id_from_identifer(source_id)}" + f"/target/{self.get_id_from_identifer(target_id)}/metapath/{metapath}" + ) + + # gather response paths as dataframe + return pd.DataFrame(requests.get(url).json()["paths"]) diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000..b75a1cd --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,25 @@ +""" +Fixtures for testing with pytest. +See here for more information: +https://docs.pytest.org/en/stable/explanation/fixtures.html +""" + +import pytest +from hetionet_utils.database import HetionetNeo4j + +@pytest.fixture +def fixture_HetionetNeo4j() -> HetionetNeo4j: + """ + Creates a HetionetNeo4j object for interacting with Hetionet Neo4j database. + Closes the connection after work is completed. + """ + + # Initialize HetionetNeo4j + yield (hetionet := HetionetNeo4j()) + + # close the connection + hetionet.close() + + + + diff --git a/tests/test_database.py b/tests/test_database.py new file mode 100644 index 0000000..18d348f --- /dev/null +++ b/tests/test_database.py @@ -0,0 +1,68 @@ +""" +Tests for the neo4j module. +""" + +from hetionet_utils.database import HetionetNeo4j + + +def test_get_id_from_gene_ontology_identifer(fixture_HetionetNeo4j: HetionetNeo4j): + """ + Tests HetionetNeo4j.get_id_from_gene_ontology_identifer + """ + + # test Neo4j ID from Gene ontology identifier + assert fixture_HetionetNeo4j.get_id_from_identifer("UBERON:0001135") == 18472 + + # test Neo4j ID from Uber-anatomy ontology identifier + assert fixture_HetionetNeo4j.get_id_from_identifer("GO:0000002") == 40731 + + # test Neo4j ID from Entrez identifier + assert fixture_HetionetNeo4j.get_id_from_identifer(1) == 16764 + + +def test_get_metapath_data(fixture_HetionetNeo4j: HetionetNeo4j): + """ + Tests HetionetNeo4j.get_metapath_data + """ + + # check a metapath result from hetionet + assert fixture_HetionetNeo4j.get_metapath_data( + source_id="UBERON:0001135", target_id="DOID:13223", metapath="AeGiGaD" + ).iloc[1].to_dict() == { + "metapath": "AeGiGaD", + "node_ids": [18472, 34788, 13320, 17256], + "rel_ids": [1722767, 1555684, 94499], + "PDP": 6.413883958245207e-05, + "percent_of_DWPC": 5.967299638241672, + "score": -0.0, + "PC": 447.0, + "DWPC": 0.0010748385948547952, + } + + +def test_run_query(fixture_HetionetNeo4j: HetionetNeo4j): + """ + Tests HetionetNeo4j.run_query + """ + + assert ( + dict( + fixture_HetionetNeo4j.run_query( + query=""" + MATCH (node) + WHERE + node.identifier = 1 + RETURN + id(node) AS neo4j_id, + node.identifier AS identifier, + node.url as node_url + ORDER BY neo4j_id + """ + )[0] + ) + == { + "neo4j_id": 16764, + "identifier": 1, + "node_url": "http://identifiers.org/ncbigene/1", + } + ) diff --git a/uv.lock b/uv.lock new file mode 100644 index 0000000..caf88e2 --- /dev/null +++ b/uv.lock @@ -0,0 +1,2108 @@ +version = 1 +requires-python = ">=3.11" +resolution-markers = [ + "python_full_version < '3.12'", + "python_full_version == '3.12.*'", + "python_full_version >= '3.13'", +] + +[[package]] +name = "annotated-types" +version = "0.7.0" +source = { registry = "https://pypi.org/simple" } +sdist = { url = "https://files.pythonhosted.org/packages/ee/67/531ea369ba64dcff5ec9c3402f9f51bf748cec26dde048a2f973a4eea7f5/annotated_types-0.7.0.tar.gz", hash = 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a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -21,7 +21,8 @@ repos: - id: codespell exclude: | (?x)^( - .*\.lock + .*\.lock | + .*\.csv )$ - repo: https://github.com/executablebooks/mdformat rev: 0.7.18 diff --git a/pyproject.toml b/pyproject.toml index 987bc86..9fc441a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -15,15 +15,15 @@ classifiers = [ ] dynamic = [ "version" ] dependencies = [ - "black>=24.10.0", - "hetmatpy>=0.1.0", + "black>=24.10", + "hetmatpy>=0.1", "ipywidgets>=8.1.5", "isort>=5.13.2", + "jupyterlab>=4.3", "jupyterlab-code-formatter>=3.0.2", - "jupyterlab>=4.3.0", "jupytext>=1.16.4", - "lancedb>=0.15.0", - "neo4j>=5.26.0", + "lancedb>=0.15", + "neo4j>=5.26", "requests>=2.32.3", ] @@ -57,10 +57,15 @@ lint.select = [ "SIM", "W", ] - # Ignore `E402` and `F401` (unused imports) in all `__init__.py` files lint.per-file-ignores."__init__.py" = [ "F401" ] +# ignore typing rules for tests +lint.per-file-ignores."tests/*" = [ "ANN201", "PLR0913", "PLR2004" ] + +[tool.jupytext] +formats = "ipynb,py:light" + [tool.uv] dev-dependencies = [ "setuptools-scm>=8.1.0", diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb index bcb839e..9fa9e3f 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb @@ -15,7 +15,7 @@ }, { "cell_type": "code", - "execution_count": 33, + "execution_count": 1, "id": "cb23bdc3-241a-47e0-8016-0533730762b6", "metadata": {}, "outputs": [], @@ -25,51 +25,33 @@ "from typing import Generator, Iterator, Tuple\n", "\n", "import lancedb\n", + "import pandas as pd\n", "import pyarrow as pa\n", - "import pyarrow.csv as csv\n", + "from pyarrow import csv\n", "\n", - "import hetionet_utils.database" + "from hetionet_utils.database import HetionetNeo4j" ] }, { "cell_type": "code", - "execution_count": 34, - "id": "dcfec16f-7ca2-46a0-af99-149753bed7d6", - "metadata": {}, - "outputs": [], - "source": [ - "# create results folder\n", - "pathlib.Path(\"data/results\").mkdir(exist_ok=True)\n", - "\n", - "# Initialize your LanceDB database and table\n", - "db = lancedb.connect(\"data/results/bioprocess_and_gene_metapaths\")\n", - "table_name = \"bioprocess_gene_metapath_combinations\"\n", - "\n", - "# If the table does not exist, create it with an initial empty DataFrame\n", - "if table_name not in db.table_names():\n", - " db.create_table(\n", - " table_name, pd.DataFrame(columns=[\"source_id\", \"target_id\", \"metapath\"])\n", - " )\n", - "\n", - "table = db.open_table(table_name)" - ] - }, - { - "cell_type": "code", - "execution_count": 35, + "execution_count": 2, "id": "33492577-2f44-404f-b866-f76a54de28ba", "metadata": {}, "outputs": [], "source": [ - "def load_arrow_table(file_path: str, column_name: str) -> pa.Table:\n", - " \"\"\"Loads a single-column Arrow Table from a CSV file.\n", + "def load_arrow_table_from_csv_column(file_path: str, column_name: str) -> pa.Table:\n", + " \"\"\"\n", + " Loads a single-column Arrow Table from a CSV file.\n", "\n", " Args:\n", - " file_path (str): The path to the CSV file.\n", - " column_name (str): The name of the column to extract.\n", + " file_path (str):\n", + " The path to the CSV file.\n", + " column_name (str):\n", + " The name of the column to extract.\n", "\n", " Returns:\n", - " pa.Table: Arrow Table with the specified column.\n", + " pa.Table:\n", + " Arrow Table with the specified column.\n", " \"\"\"\n", " table = csv.read_csv(file_path)\n", " return table.select([column_name])\n", @@ -78,15 +60,20 @@ "def generate_combinations(\n", " table_bioprocesses: pa.Table, table_genes: pa.Table, table_metapaths: pa.Table\n", ") -> Generator[Tuple[str, str, str], None, None]:\n", - " \"\"\"Generates all possible combinations of IDs from three Arrow tables.\n", + " \"\"\"\n", + " Generates all possible combinations of IDs from three Arrow tables.\n", "\n", " Args:\n", - " table_bioprocesses (pa.Table): Arrow Table containing bioprocess IDs in an 'id' column.\n", - " table_genes (pa.Table): Arrow Table containing gene IDs in an 'id' column.\n", - " table_metapaths (pa.Table): Arrow Table containing metapath values in a 'metapath' column.\n", + " table_bioprocesses (pa.Table):\n", + " Arrow Table containing bioprocess IDs in an 'id' column.\n", + " table_genes (pa.Table):\n", + " Arrow Table containing gene IDs in an 'id' column.\n", + " table_metapaths (pa.Table):\n", + " Arrow Table containing metapath values in a 'metapath' column.\n", "\n", " Yields:\n", - " Tuple[str, str, str]: A tuple with a bioprocess ID, a gene ID, and a metapath value.\n", + " Tuple[str, str, str]:\n", + " A tuple with a bioprocess ID, a gene ID, and a metapath value.\n", " \"\"\"\n", " for combo in product(\n", " table_bioprocesses[\"id\"].to_pylist(),\n", @@ -99,20 +86,26 @@ "def process_in_chunks(\n", " generator: Iterator[Tuple[str, str, str]], chunk_size: int = 1000\n", ") -> Iterator[pa.Table]:\n", - " \"\"\"Processes combinations from a generator in smaller chunks as Arrow Tables.\n", + " \"\"\"\n", + " Processes combinations from a generator in smaller chunks\n", + " as Arrow Tables.\n", "\n", " Args:\n", - " generator (Iterator[Tuple[str, str, str]]): A generator that yields tuples of combinations.\n", - " chunk_size (int, optional): The number of rows per chunk. Defaults to 1000.\n", + " generator (Iterator[Tuple[str, str, str]]):\n", + " A generator that yields tuples of combinations.\n", + " chunk_size (int, optional):\n", + " The number of rows per chunk. Defaults to 1000.\n", "\n", " Yields:\n", - " pa.Table: An Arrow Table containing a chunk of combinations with columns ['source_id', 'target_id', 'metapath'].\n", + " pa.Table:\n", + " An Arrow Table containing a chunk of combinations\n", + " with columns ['source_id', 'target_id', 'metapath'].\n", " \"\"\"\n", " chunk = []\n", " for i, combo in enumerate(generator):\n", " # Convert each combination to a tuple of strings to avoid None values\n", - " combo = tuple(str(x) if x is not None else \"\" for x in combo)\n", - " chunk.append(combo)\n", + " combo_tuple = tuple(str(x) if x is not None else \"\" for x in combo)\n", + " chunk.append(combo_tuple)\n", "\n", " if (i + 1) % chunk_size == 0:\n", " # Create Arrow Table from the chunk\n", @@ -138,7 +131,7 @@ }, { "cell_type": "code", - "execution_count": 36, + "execution_count": 3, "id": "22142383-8ae8-4c3a-b5ac-17c9f2dfc409", "metadata": {}, "outputs": [ @@ -200,7 +193,7 @@ "9 BPpGeAeG" ] }, - "execution_count": 36, + "execution_count": 3, "metadata": {}, "output_type": "execute_result" } @@ -217,242 +210,122 @@ }, { "cell_type": "code", - "execution_count": 37, - "id": "e228fb04-ba5c-4e44-b5bd-aa1f7816ea5b", + "execution_count": 4, + "id": "1b75acd4-2bb3-4adf-a851-d758e75b22b6", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "bioprocesses:\n", - " id name\n", - "0 GO:0000002 mitochondrial genome maintenance\n", - "1 GO:0000012 single strand break repair\n", - "2 GO:0000018 regulation of DNA recombination\n", - "3 GO:0000019 regulation of mitotic recombination\n", - "4 GO:0000022 mitotic spindle elongation \n", - "\n", - " genes:\n", - " id name\n", - "0 1 A1BG\n", - "1 10 NAT2\n", - "2 100 ADA\n", - "3 1000 CDH2\n", - "4 10000 AKT3\n" + "Expected number of queries: 11203627115\n" ] } ], "source": [ - "# read the biological processes and genes\n", - "df_bioprocesses = pd.read_csv(\"data/sources/BP.csv\")\n", - "df_genes = pd.read_csv(\"data/sources/Gene.csv\")\n", + "# Load input CSV files into Arrow Tables\n", + "table_bioprocesses = load_arrow_table_from_csv_column(\"data/sources/BP.csv\", \"id\")\n", + "table_genes = load_arrow_table_from_csv_column(\"data/sources/Gene.csv\", \"id\")\n", + "table_metapaths = pa.Table.from_pandas(df_metapaths)\n", "\n", - "print(\"bioprocesses:\\n\", df_bioprocesses.head(), \"\\n\\n\", \"genes:\\n\", df_genes.head())" + "print(\n", + " \"Expected number of queries: \",\n", + " table_bioprocesses.num_rows * table_genes.num_rows * table_metapaths.num_rows,\n", + ")" ] }, { "cell_type": "code", - "execution_count": 49, - "id": "1b75acd4-2bb3-4adf-a851-d758e75b22b6", + "execution_count": 5, + "id": "258960f1-1ea7-4365-b948-af69c6425d37", + "metadata": {}, + "outputs": [], + "source": [ + "hetiocli = HetionetNeo4j()\n", + "sample_result = hetiocli.get_metapath_data(\n", + " source_id=str(table_bioprocesses[0][0]),\n", + " target_id=int(str(table_genes[0][0])),\n", + " metapath=str(table_metapaths[0][0]),\n", + ")" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "61dc2f7e-c6d0-4f4a-87e7-f9a5d8309f89", + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "[2024-11-06T12:56:02Z WARN lance::dataset] No existing dataset at /Users/dabu5788/Documents/work/hetionet-analysis/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/results/bioprocess_and_gene_metapaths/bioprocess_gene_metapath_scores.lance, it will be created\n" + ] + } + ], + "source": [ + "# create results folder\n", + "pathlib.Path(\"data/results\").mkdir(exist_ok=True)\n", + "\n", + "# Initialize your LanceDB database and table\n", + "db = lancedb.connect(\"data/results/bioprocess_and_gene_metapaths\")\n", + "table_name = \"bioprocess_gene_metapath_scores\"\n", + "\n", + "# create table, overwriting previous results\n", + "db.create_table(\n", + " table_name,\n", + " schema=pa.Table.from_pandas(sample_result).schema,\n", + " mode=\"overwrite\",\n", + ")\n", + "\n", + "table = db.open_table(table_name)" + ] + }, + { + "cell_type": "code", + "execution_count": 12, + "id": "ea0c56c1-ef9c-487b-80ae-296a55b2682a", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "Adding chunk 1\n", - "\n", - "source_id: string\n", - "target_id: string\n", - "metapath: string\n" + "Adding chunk 1\n" ] }, { - "ename": "ArrowNotImplementedError", - "evalue": "Unsupported cast from string to null using function cast_null", + "ename": "KeyboardInterrupt", + "evalue": "", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", - "\u001b[0;31mArrowNotImplementedError\u001b[0m Traceback (most recent call last)", - "Cell \u001b[0;32mIn[49], line 16\u001b[0m\n\u001b[1;32m 14\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;28mtype\u001b[39m(chunk_table))\n\u001b[1;32m 15\u001b[0m \u001b[38;5;28mprint\u001b[39m(chunk_table\u001b[38;5;241m.\u001b[39mschema)\n\u001b[0;32m---> 16\u001b[0m \u001b[43mtable\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43madd\u001b[49m\u001b[43m(\u001b[49m\u001b[43mchunk_table\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 17\u001b[0m count \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;241m1\u001b[39m\n\u001b[1;32m 18\u001b[0m \u001b[38;5;28;01mbreak\u001b[39;00m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1509\u001b[0m, in \u001b[0;36mLanceTable.add\u001b[0;34m(self, data, mode, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 1485\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m\"\"\"Add data to the table.\u001b[39;00m\n\u001b[1;32m 1486\u001b[0m \u001b[38;5;124;03mIf vector columns are missing and the table\u001b[39;00m\n\u001b[1;32m 1487\u001b[0m \u001b[38;5;124;03mhas embedding functions, then the vector columns\u001b[39;00m\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 1506\u001b[0m \u001b[38;5;124;03m The number of vectors in the table.\u001b[39;00m\n\u001b[1;32m 1507\u001b[0m \u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m 1508\u001b[0m \u001b[38;5;66;03m# TODO: manage table listing and metadata separately\u001b[39;00m\n\u001b[0;32m-> 1509\u001b[0m data, _ \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_data\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 1510\u001b[0m \u001b[43m \u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1511\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1512\u001b[0m \u001b[43m \u001b[49m\u001b[43mmetadata\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmetadata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1513\u001b[0m \u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1514\u001b[0m \u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mfill_value\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1515\u001b[0m \u001b[43m\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 1516\u001b[0m \u001b[38;5;66;03m# Access the dataset_mut property to ensure that the dataset is mutable.\u001b[39;00m\n\u001b[1;32m 1517\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_ref\u001b[38;5;241m.\u001b[39mdataset_mut\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:154\u001b[0m, in \u001b[0;36m_sanitize_data\u001b[0;34m(data, schema, metadata, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 151\u001b[0m data \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mreplace_schema_metadata(metadata)\n\u001b[1;32m 153\u001b[0m \u001b[38;5;66;03m# TODO improve the logics in _sanitize_schema\u001b[39;00m\n\u001b[0;32m--> 154\u001b[0m data \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_schema\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 155\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m schema \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[1;32m 156\u001b[0m schema \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mschema\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:2033\u001b[0m, in \u001b[0;36m_sanitize_schema\u001b[0;34m(data, schema, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 2024\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m field\u001b[38;5;241m.\u001b[39mname \u001b[38;5;129;01min\u001b[39;00m data\u001b[38;5;241m.\u001b[39mcolumn_names \u001b[38;5;129;01mand\u001b[39;00m (\n\u001b[1;32m 2025\u001b[0m likely_vector_col \u001b[38;5;129;01mor\u001b[39;00m is_default_vector_col\n\u001b[1;32m 2026\u001b[0m ):\n\u001b[1;32m 2027\u001b[0m data \u001b[38;5;241m=\u001b[39m _sanitize_vector_column(\n\u001b[1;32m 2028\u001b[0m data,\n\u001b[1;32m 2029\u001b[0m vector_column_name\u001b[38;5;241m=\u001b[39mfield\u001b[38;5;241m.\u001b[39mname,\n\u001b[1;32m 2030\u001b[0m on_bad_vectors\u001b[38;5;241m=\u001b[39mon_bad_vectors,\n\u001b[1;32m 2031\u001b[0m fill_value\u001b[38;5;241m=\u001b[39mfill_value,\n\u001b[1;32m 2032\u001b[0m )\n\u001b[0;32m-> 2033\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43mpa\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mTable\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mfrom_arrays\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 2034\u001b[0m \u001b[43m \u001b[49m\u001b[43m[\u001b[49m\u001b[43mdata\u001b[49m\u001b[43m[\u001b[49m\u001b[43mname\u001b[49m\u001b[43m]\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43;01mfor\u001b[39;49;00m\u001b[43m \u001b[49m\u001b[43mname\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;129;43;01min\u001b[39;49;00m\u001b[43m \u001b[49m\u001b[43mschema\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mnames\u001b[49m\u001b[43m]\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mschema\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mschema\u001b[49m\n\u001b[1;32m 2035\u001b[0m \u001b[43m \u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 2037\u001b[0m \u001b[38;5;66;03m# just check the vector column\u001b[39;00m\n\u001b[1;32m 2038\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m VECTOR_COLUMN_NAME \u001b[38;5;129;01min\u001b[39;00m data\u001b[38;5;241m.\u001b[39mcolumn_names:\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:4851\u001b[0m, in \u001b[0;36mpyarrow.lib.Table.from_arrays\u001b[0;34m()\u001b[0m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1608\u001b[0m, in \u001b[0;36mpyarrow.lib._sanitize_arrays\u001b[0;34m()\u001b[0m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/array.pxi:397\u001b[0m, in \u001b[0;36mpyarrow.lib.asarray\u001b[0;34m()\u001b[0m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:593\u001b[0m, in \u001b[0;36mpyarrow.lib.ChunkedArray.cast\u001b[0;34m()\u001b[0m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/compute.py:405\u001b[0m, in \u001b[0;36mcast\u001b[0;34m(arr, target_type, safe, options, memory_pool)\u001b[0m\n\u001b[1;32m 403\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m 404\u001b[0m options \u001b[38;5;241m=\u001b[39m CastOptions\u001b[38;5;241m.\u001b[39msafe(target_type)\n\u001b[0;32m--> 405\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43mcall_function\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mcast\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43m[\u001b[49m\u001b[43marr\u001b[49m\u001b[43m]\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43moptions\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mmemory_pool\u001b[49m\u001b[43m)\u001b[49m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/_compute.pyx:598\u001b[0m, in \u001b[0;36mpyarrow._compute.call_function\u001b[0;34m()\u001b[0m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/_compute.pyx:393\u001b[0m, in \u001b[0;36mpyarrow._compute.Function.call\u001b[0;34m()\u001b[0m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/error.pxi:155\u001b[0m, in \u001b[0;36mpyarrow.lib.pyarrow_internal_check_status\u001b[0;34m()\u001b[0m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/error.pxi:92\u001b[0m, in \u001b[0;36mpyarrow.lib.check_status\u001b[0;34m()\u001b[0m\n", - "\u001b[0;31mArrowNotImplementedError\u001b[0m: Unsupported cast from string to null using function cast_null" + "\u001b[0;31mKeyboardInterrupt\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[12], line 9\u001b[0m\n\u001b[1;32m 6\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m chunk_table \u001b[38;5;129;01min\u001b[39;00m process_in_chunks(generator, chunk_size\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m5000000\u001b[39m):\n\u001b[1;32m 7\u001b[0m \u001b[38;5;66;03m# add the chunk to the table\u001b[39;00m\n\u001b[1;32m 8\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mAdding chunk \u001b[39m\u001b[38;5;132;01m{\u001b[39;00mcount\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m\"\u001b[39m)\n\u001b[0;32m----> 9\u001b[0m \u001b[43mtable\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43madd\u001b[49m\u001b[43m(\u001b[49m\u001b[43mchunk_table\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 10\u001b[0m count \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;241m1\u001b[39m\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1519\u001b[0m, in \u001b[0;36mLanceTable.add\u001b[0;34m(self, data, mode, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 1516\u001b[0m \u001b[38;5;66;03m# Access the dataset_mut property to ensure that the dataset is mutable.\u001b[39;00m\n\u001b[1;32m 1517\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_ref\u001b[38;5;241m.\u001b[39mdataset_mut\n\u001b[1;32m 1518\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_ref\u001b[38;5;241m.\u001b[39mdataset \u001b[38;5;241m=\u001b[39m lance\u001b[38;5;241m.\u001b[39mwrite_dataset(\n\u001b[0;32m-> 1519\u001b[0m data, \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_dataset_uri, schema\u001b[38;5;241m=\u001b[39m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m, mode\u001b[38;5;241m=\u001b[39mmode\n\u001b[1;32m 1520\u001b[0m )\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1117\u001b[0m, in \u001b[0;36mLanceTable.schema\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 1109\u001b[0m \u001b[38;5;129m@property\u001b[39m\n\u001b[1;32m 1110\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mschema\u001b[39m(\u001b[38;5;28mself\u001b[39m) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m pa\u001b[38;5;241m.\u001b[39mSchema:\n\u001b[1;32m 1111\u001b[0m \u001b[38;5;250m \u001b[39m\u001b[38;5;124;03m\"\"\"Return the schema of the table.\u001b[39;00m\n\u001b[1;32m 1112\u001b[0m \n\u001b[1;32m 1113\u001b[0m \u001b[38;5;124;03m Returns\u001b[39;00m\n\u001b[1;32m 1114\u001b[0m \u001b[38;5;124;03m -------\u001b[39;00m\n\u001b[1;32m 1115\u001b[0m \u001b[38;5;124;03m pa.Schema\u001b[39;00m\n\u001b[1;32m 1116\u001b[0m \u001b[38;5;124;03m A PyArrow schema object.\"\"\"\u001b[39;00m\n\u001b[0;32m-> 1117\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_dataset\u001b[49m\u001b[38;5;241m.\u001b[39mschema\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1099\u001b[0m, in \u001b[0;36mLanceTable._dataset\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 1097\u001b[0m \u001b[38;5;129m@property\u001b[39m\n\u001b[1;32m 1098\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21m_dataset\u001b[39m(\u001b[38;5;28mself\u001b[39m) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m LanceDataset:\n\u001b[0;32m-> 1099\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_ref\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mdataset\u001b[49m\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:984\u001b[0m, in \u001b[0;36m_LanceLatestDatasetRef.dataset\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 981\u001b[0m \u001b[38;5;129m@property\u001b[39m\n\u001b[1;32m 982\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mdataset\u001b[39m(\u001b[38;5;28mself\u001b[39m) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m LanceDataset:\n\u001b[1;32m 983\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_dataset:\n\u001b[0;32m--> 984\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_dataset \u001b[38;5;241m=\u001b[39m \u001b[43mlance\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mdataset\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 985\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43muri\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mindex_cache_size\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mindex_cache_size\u001b[49m\n\u001b[1;32m 986\u001b[0m \u001b[43m \u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 987\u001b[0m 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"source": [ - "# Load input CSV files into Arrow Tables\n", - "table_bioprocesses = load_arrow_table(\"data/sources/BP.csv\", \"id\")\n", - "table_genes = load_arrow_table(\"data/sources/Gene.csv\", \"id\")\n", - "table_metapaths = pa.Table.from_pandas(df_metapaths)\n", - "\n", "# Generate combinations\n", "generator = generate_combinations(table_bioprocesses, table_genes, table_metapaths)\n", "\n", "count = 1\n", "# Process and print chunks\n", - "for chunk_table in process_in_chunks(generator):\n", + "for chunk_table in process_in_chunks(generator, chunk_size=5000000):\n", " # add the chunk to the table\n", " print(f\"Adding chunk {count}\")\n", - " print(type(chunk_table))\n", - " print(chunk_table.schema)\n", " table.add(chunk_table)\n", " count += 1\n", " break" ] }, - { - "cell_type": "code", - "execution_count": 47, - "id": "a3f235a7-e777-4252-82fc-a71c1c284abd", - "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "
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source_idtarget_idmetapath
0GO:00000021BPpGdAdG
1GO:00000021BPpGdAeG
2GO:00000021BPpGdAuG
3GO:00000021BPpGeAdG
4GO:00000021BPpGeAeG
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" - ], - "text/plain": [ - " source_id target_id metapath\n", - "0 GO:0000002 1 BPpGdAdG\n", - "1 GO:0000002 1 BPpGdAeG\n", - "2 GO:0000002 1 BPpGdAuG\n", - "3 GO:0000002 1 BPpGeAdG\n", - "4 GO:0000002 1 BPpGeAeG\n", - ".. ... ... ...\n", - "95 GO:0000002 100 BPpGdAeG\n", - "96 GO:0000002 100 BPpGdAuG\n", - "97 GO:0000002 100 BPpGeAdG\n", - "98 GO:0000002 100 BPpGeAeG\n", - "99 GO:0000002 100 BPpGeAuG\n", - "\n", - "[100 rows x 3 columns]" - ] - }, - "execution_count": 47, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "chunk_df" - ] - }, - { - "cell_type": "code", - "execution_count": 18, - "id": "a04d5361-6ef1-48c1-8a58-50986d8f63ff", - "metadata": {}, - "outputs": [], - "source": [ - "chunk_df.to_csv(\"testing.csv\")" - ] - }, { "cell_type": "code", "execution_count": null, diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py new file mode 100644 index 0000000..fb5703f --- /dev/null +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py @@ -0,0 +1,190 @@ +# --- +# jupyter: +# jupytext: +# text_representation: +# extension: .py +# format_name: light +# format_version: '1.5' +# jupytext_version: 1.16.4 +# kernelspec: +# display_name: Python 3 (ipykernel) +# language: python +# name: python3 +# --- + +# # Biological Process and Gene Metapath Data Gathering +# +# - Each value from `BP.csv` is a source and each value from `Gene.csv` is a target. +# - Each source + target pairing may have a metapath which is found within `metapaths.csv`. +# - For each pair metapath we need the DWPC and p-value stored in a table for reference. +# - Ignore metapaths found within `metapaths_ignore.csv`. + +# + +import pathlib +from itertools import product +from typing import Generator, Iterator, Tuple + +import lancedb +import pandas as pd +import pyarrow as pa +import pyarrow.csv as csv + +from hetionet_utils.database import HetionetNeo4j + + +# + +def load_arrow_table_from_csv_column(file_path: str, column_name: str) -> pa.Table: + """ + Loads a single-column Arrow Table from a CSV file. + + Args: + file_path (str): + The path to the CSV file. + column_name (str): + The name of the column to extract. + + Returns: + pa.Table: + Arrow Table with the specified column. + """ + table = csv.read_csv(file_path) + return table.select([column_name]) + + +def generate_combinations( + table_bioprocesses: pa.Table, table_genes: pa.Table, table_metapaths: pa.Table +) -> Generator[Tuple[str, str, str], None, None]: + """ + Generates all possible combinations of IDs from three Arrow tables. + + Args: + table_bioprocesses (pa.Table): + Arrow Table containing bioprocess IDs in an 'id' column. + table_genes (pa.Table): + Arrow Table containing gene IDs in an 'id' column. + table_metapaths (pa.Table): + Arrow Table containing metapath values in a 'metapath' column. + + Yields: + Tuple[str, str, str]: + A tuple with a bioprocess ID, a gene ID, and a metapath value. + """ + for combo in product( + table_bioprocesses["id"].to_pylist(), + table_genes["id"].to_pylist(), + table_metapaths["metapath"].to_pylist(), + ): + yield combo + + +def process_in_chunks( + generator: Iterator[Tuple[str, str, str]], chunk_size: int = 1000 +) -> Iterator[pa.Table]: + """ + Processes combinations from a generator in smaller chunks + as Arrow Tables. + + Args: + generator (Iterator[Tuple[str, str, str]]): + A generator that yields tuples of combinations. + chunk_size (int, optional): + The number of rows per chunk. Defaults to 1000. + + Yields: + pa.Table: + An Arrow Table containing a chunk of combinations + with columns ['source_id', 'target_id', 'metapath']. + """ + chunk = [] + for i, combo in enumerate(generator): + # Convert each combination to a tuple of strings to avoid None values + combo_tuple = tuple(str(x) if x is not None else "" for x in combo) + chunk.append(combo_tuple) + + if (i + 1) % chunk_size == 0: + # Create Arrow Table from the chunk + yield pa.table( + { + "source_id": [row[0] for row in chunk], + "target_id": [row[1] for row in chunk], + "metapath": [row[2] for row in chunk], + } + ) + chunk = [] + + # Yield any remaining combinations as an Arrow Table + if chunk: + yield pa.table( + { + "source_id": [row[0] for row in chunk], + "target_id": [row[1] for row in chunk], + "metapath": [row[2] for row in chunk], + } + ) + + +# - + +# gather metapaths which are not in the metapaths_ignore.csv +df_metapaths = pd.read_csv("data/sources/metapaths.csv") +df_metapaths_ignore = pd.read_csv("data/sources/metapaths_ignore.csv") +df_metapaths = df_metapaths[ + ~df_metapaths["metapath"].isin(df_metapaths_ignore["metapath"]) +] +df_metapaths.head() + +# + +# Load input CSV files into Arrow Tables +table_bioprocesses = load_arrow_table_from_csv_column("data/sources/BP.csv", "id") +table_genes = load_arrow_table_from_csv_column("data/sources/Gene.csv", "id") +table_metapaths = pa.Table.from_pandas(df_metapaths) + +print( + "Expected number of queries: ", + table_bioprocesses.num_rows * table_genes.num_rows * table_metapaths.num_rows, +) +# - + +hetiocli = HetionetNeo4j() +sample_result = hetiocli.get_metapath_data( + source_id=str(table_bioprocesses[0][0]), + target_id=int(str(table_genes[0][0])), + metapath=str(table_metapaths[0][0]), +) + +# + +# create results folder +pathlib.Path("data/results").mkdir(exist_ok=True) + +# Initialize your LanceDB database and table +db = lancedb.connect("data/results/bioprocess_and_gene_metapaths") +table_name = "bioprocess_gene_metapath_scores" + +# create table, overwriting previous results +db.create_table( + table_name, + schema=pa.Table.from_pandas(sample_result).schema, + mode="overwrite", +) + +table = db.open_table(table_name) + +# + +# Generate combinations +generator = generate_combinations(table_bioprocesses, table_genes, table_metapaths) + +count = 1 +# Process and print chunks +for chunk_table in process_in_chunks(generator, chunk_size=5000000): + # add the chunk to the table + print(f"Adding chunk {count}") + table.add(chunk_table) + count += 1 + break + +# + +# After inserting all chunks, show the shape of the table +num_rows = table.count() +num_columns = len(table.schema().names) + +print(f"Table shape: ({num_rows}, {num_columns})") diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/readme.md b/src/bioprocess_metapath_to_gene_pval_and_dwpc/readme.md deleted file mode 100644 index 4e853df..0000000 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/readme.md +++ /dev/null @@ -1,6 +0,0 @@ -# Biological Process and Gene Metapath Data Gathering - -- Each value from `BP.csv` is a source and each value from `Gene.csv` is a target. -- Each source + target pairing may have a metapath which is found within `metapaths.csv`. -- For each pair metapath we need the DWPC and p-value stored in a table for reference. -- Ignore metapaths found within `metapaths_ignore.csv`. diff --git a/src/hetionet_utils/database.py b/src/hetionet_utils/database.py index be1fa2a..181a311 100644 --- a/src/hetionet_utils/database.py +++ b/src/hetionet_utils/database.py @@ -2,10 +2,11 @@ Modules for interacting with various databases. """ -from neo4j import GraphDatabase -from typing import List +from typing import List, Optional, Self + import pandas as pd import requests +from neo4j import GraphDatabase class HetionetNeo4j: @@ -19,7 +20,12 @@ class HetionetNeo4j: The Cypher query to get Neo4j ID from a node identifier. """ - def __init__(self, uri="bolt://neo4j.het.io:7687", user="neo4j", password="neo4j"): + def __init__( + self: Self, + uri: str = "bolt://neo4j.het.io:7687", + user: str = "neo4j", + password: str = "neo4j", + ) -> None: """ Initialize the HetionetNeo4j class with a connection to the Neo4j database. @@ -44,13 +50,15 @@ def __init__(self, uri="bolt://neo4j.het.io:7687", user="neo4j", password="neo4j """ self.api_base_path = "https://search-api.het.io/v1" - def close(self): + def close(self: Self) -> None: """ Close the connection to the Neo4j database. """ self.driver.close() - def run_query(self, query: str, parameters: dict = None) -> List[dict]: + def run_query( + self: Self, query: str, parameters: Optional[dict] = None + ) -> List[dict]: """ Run a Cypher query against the Neo4j database. @@ -70,7 +78,7 @@ def run_query(self, query: str, parameters: dict = None) -> List[dict]: result = session.run(query, parameters) return list(result) - def get_id_from_identifer(self, identifier: str) -> int: + def get_id_from_identifer(self: Self, identifier: str) -> int: """ Get the Neo4j ID of a node from its identifier. @@ -87,8 +95,10 @@ def get_id_from_identifer(self, identifier: str) -> int: query=self.query_node_identifier_to_neo4j_id, parameters={"identifier": identifier}, )[0]["neo4j_id"] - - def get_metapath_data(self, source_id: str, target_id: str, metapath: str) -> pd.DataFrame: + + def get_metapath_data( + self: Self, source_id: str, target_id: str, metapath: str + ) -> pd.DataFrame: """ Gathers metapath data from Hetionet via REST API. """ diff --git a/tests/conftest.py b/tests/conftest.py index b75a1cd..4eeae8e 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -5,8 +5,10 @@ """ import pytest + from hetionet_utils.database import HetionetNeo4j + @pytest.fixture def fixture_HetionetNeo4j() -> HetionetNeo4j: """ @@ -19,7 +21,3 @@ def fixture_HetionetNeo4j() -> HetionetNeo4j: # close the connection hetionet.close() - - - - diff --git a/tests/test_database.py b/tests/test_database.py index 18d348f..b60818c 100644 --- a/tests/test_database.py +++ b/tests/test_database.py @@ -45,10 +45,9 @@ def test_run_query(fixture_HetionetNeo4j: HetionetNeo4j): Tests HetionetNeo4j.run_query """ - assert ( - dict( - fixture_HetionetNeo4j.run_query( - query=""" + assert dict( + fixture_HetionetNeo4j.run_query( + query=""" MATCH (node) WHERE node.identifier = 1 @@ -58,11 +57,9 @@ def test_run_query(fixture_HetionetNeo4j: HetionetNeo4j): node.url as node_url ORDER BY neo4j_id """ - )[0] - ) - == { - "neo4j_id": 16764, - "identifier": 1, - "node_url": "http://identifiers.org/ncbigene/1", - } - ) + )[0] + ) == { + "neo4j_id": 16764, + "identifier": 1, + "node_url": "http://identifiers.org/ncbigene/1", + } From e404e2ef1ece09f5960a9154a8b55fc9ec67e08d Mon Sep 17 00:00:00 2001 From: d33bs Date: Wed, 6 Nov 2024 06:06:44 -0700 Subject: [PATCH 03/11] linting --- .../gather_data.ipynb | 12 ++++++++---- .../gather_data.py | 14 +++++++++----- 2 files changed, 17 insertions(+), 9 deletions(-) diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb index 9fa9e3f..6c50d8e 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb @@ -7,10 +7,14 @@ "source": [ "# Biological Process and Gene Metapath Data Gathering\n", "\n", - "- Each value from `BP.csv` is a source and each value from `Gene.csv` is a target. \n", - "- Each source + target pairing may have a metapath which is found within `metapaths.csv`.\n", - "- For each pair metapath we need the DWPC and p-value stored in a table for reference.\n", - "- Ignore metapaths found within `metapaths_ignore.csv`." + "- Each value from `BP.csv` is a source and each value\n", + "from `Gene.csv` is a target. \n", + "- Each source + target pairing may have a metapath which\n", + "is found within `metapaths.csv`.\n", + "- For each pair metapath we need the DWPC and p-value\n", + "stored in a table for reference.\n", + "- Ignore metapaths found within\n", + "`metapaths_ignore.csv`." ] }, { diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py index fb5703f..bcd2458 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py @@ -14,10 +14,14 @@ # # Biological Process and Gene Metapath Data Gathering # -# - Each value from `BP.csv` is a source and each value from `Gene.csv` is a target. -# - Each source + target pairing may have a metapath which is found within `metapaths.csv`. -# - For each pair metapath we need the DWPC and p-value stored in a table for reference. -# - Ignore metapaths found within `metapaths_ignore.csv`. +# - Each value from `BP.csv` is a source and each value +# from `Gene.csv` is a target. +# - Each source + target pairing may have a metapath which +# is found within `metapaths.csv`. +# - For each pair metapath we need the DWPC and p-value +# stored in a table for reference. +# - Ignore metapaths found within +# `metapaths_ignore.csv`. # + import pathlib @@ -27,7 +31,7 @@ import lancedb import pandas as pd import pyarrow as pa -import pyarrow.csv as csv +from pyarrow import csv from hetionet_utils.database import HetionetNeo4j From 7805491e87633ae5eaa43e2458dbbb65741946c8 Mon Sep 17 00:00:00 2001 From: d33bs Date: Wed, 6 Nov 2024 06:07:29 -0700 Subject: [PATCH 04/11] updates --- .../gather_data.ipynb | 244 ++++++++++++++++-- .../gather_data.py | 1 + 2 files changed, 221 insertions(+), 24 deletions(-) diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb index 6c50d8e..d2de19f 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb @@ -243,30 +243,226 @@ "execution_count": 5, "id": "258960f1-1ea7-4365-b948-af69c6425d37", "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "
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metapathnode_idsrel_idsPDPpercent_of_DWPCscorePCDWPC
0BPpGdAdG[40731, 21753, 36969, 16764][1390556, 865578, 2128874]0.00000416.997932-0.0NaNNaN
1BPpGdAdG[40731, 32551, 36969, 16764][1196717, 11354, 2128874]0.00000416.778595-0.012.00.000025
2BPpGdAdG[40731, 39858, 36969, 16764][1220136, 2096090, 2128874]0.0000029.334748-0.012.00.000025
3BPpGdAdG[40731, 8043, 36969, 16764][1153859, 1995416, 2128874]0.0000028.169678-0.012.00.000025
4BPpGdAdG[40731, 30743, 11763, 16764][1837396, 1950404, 1188329]0.0000027.757325-0.012.00.000025
5BPpGdAdG[40731, 10526, 36969, 16764][132194, 85560, 2128874]0.0000027.532643-0.012.00.000025
6BPpGdAdG[40731, 45057, 36969, 16764][1985929, 450350, 2128874]0.0000026.985486-0.012.00.000025
7BPpGdAdG[40731, 12891, 11763, 16764][1079500, 2053410, 1188329]0.0000026.545380-0.012.00.000025
8BPpGdAdG[40731, 20458, 36969, 16764][18158, 962402, 2128874]0.0000016.009676-0.012.00.000025
9BPpGdAdG[40731, 9350, 36969, 16764][2091178, 285298, 2128874]0.0000014.833247-0.012.00.000025
10BPpGdAdG[40731, 9740, 36969, 16764][2030417, 658582, 2128874]0.0000014.619502-0.012.00.000025
11BPpGdAdG[40731, 22854, 36969, 16764][1414951, 1871571, 2128874]0.0000014.435788-0.012.00.000025
\n", + "
" + ], + "text/plain": [ + " metapath node_ids rel_ids \\\n", + "0 BPpGdAdG [40731, 21753, 36969, 16764] [1390556, 865578, 2128874] \n", + "1 BPpGdAdG [40731, 32551, 36969, 16764] [1196717, 11354, 2128874] \n", + "2 BPpGdAdG [40731, 39858, 36969, 16764] [1220136, 2096090, 2128874] \n", + "3 BPpGdAdG [40731, 8043, 36969, 16764] [1153859, 1995416, 2128874] \n", + "4 BPpGdAdG [40731, 30743, 11763, 16764] [1837396, 1950404, 1188329] \n", + "5 BPpGdAdG [40731, 10526, 36969, 16764] [132194, 85560, 2128874] \n", + "6 BPpGdAdG [40731, 45057, 36969, 16764] [1985929, 450350, 2128874] \n", + "7 BPpGdAdG [40731, 12891, 11763, 16764] [1079500, 2053410, 1188329] \n", + "8 BPpGdAdG [40731, 20458, 36969, 16764] [18158, 962402, 2128874] \n", + "9 BPpGdAdG [40731, 9350, 36969, 16764] [2091178, 285298, 2128874] \n", + "10 BPpGdAdG [40731, 9740, 36969, 16764] [2030417, 658582, 2128874] \n", + "11 BPpGdAdG [40731, 22854, 36969, 16764] [1414951, 1871571, 2128874] \n", + "\n", + " PDP percent_of_DWPC score PC DWPC \n", + "0 0.000004 16.997932 -0.0 NaN NaN \n", + "1 0.000004 16.778595 -0.0 12.0 0.000025 \n", + "2 0.000002 9.334748 -0.0 12.0 0.000025 \n", + "3 0.000002 8.169678 -0.0 12.0 0.000025 \n", + "4 0.000002 7.757325 -0.0 12.0 0.000025 \n", + "5 0.000002 7.532643 -0.0 12.0 0.000025 \n", + "6 0.000002 6.985486 -0.0 12.0 0.000025 \n", + "7 0.000002 6.545380 -0.0 12.0 0.000025 \n", + "8 0.000001 6.009676 -0.0 12.0 0.000025 \n", + "9 0.000001 4.833247 -0.0 12.0 0.000025 \n", + "10 0.000001 4.619502 -0.0 12.0 0.000025 \n", + "11 0.000001 4.435788 -0.0 12.0 0.000025 " + ] + }, + "execution_count": 5, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "hetiocli = HetionetNeo4j()\n", "sample_result = hetiocli.get_metapath_data(\n", " source_id=str(table_bioprocesses[0][0]),\n", " target_id=int(str(table_genes[0][0])),\n", " metapath=str(table_metapaths[0][0]),\n", - ")" + ")\n", + "sample_result" ] }, { "cell_type": "code", - "execution_count": 7, + "execution_count": 6, "id": "61dc2f7e-c6d0-4f4a-87e7-f9a5d8309f89", "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "[2024-11-06T12:56:02Z WARN lance::dataset] No existing dataset at /Users/dabu5788/Documents/work/hetionet-analysis/src/bioprocess_metapath_to_gene_pval_and_dwpc/data/results/bioprocess_and_gene_metapaths/bioprocess_gene_metapath_scores.lance, it will be created\n" - ] - } - ], + "outputs": [], "source": [ "# create results folder\n", "pathlib.Path(\"data/results\").mkdir(exist_ok=True)\n", @@ -287,7 +483,7 @@ }, { "cell_type": "code", - "execution_count": 12, + "execution_count": 7, "id": "ea0c56c1-ef9c-487b-80ae-296a55b2682a", "metadata": {}, "outputs": [ @@ -299,20 +495,20 @@ ] }, { - "ename": "KeyboardInterrupt", - "evalue": "", + "ename": "KeyError", + "evalue": "'Field \"node_ids\" does not exist in schema'", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", - "\u001b[0;31mKeyboardInterrupt\u001b[0m Traceback (most recent call last)", - "Cell \u001b[0;32mIn[12], line 9\u001b[0m\n\u001b[1;32m 6\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m chunk_table \u001b[38;5;129;01min\u001b[39;00m process_in_chunks(generator, chunk_size\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m5000000\u001b[39m):\n\u001b[1;32m 7\u001b[0m \u001b[38;5;66;03m# add the chunk to the table\u001b[39;00m\n\u001b[1;32m 8\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mAdding chunk \u001b[39m\u001b[38;5;132;01m{\u001b[39;00mcount\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m\"\u001b[39m)\n\u001b[0;32m----> 9\u001b[0m \u001b[43mtable\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43madd\u001b[49m\u001b[43m(\u001b[49m\u001b[43mchunk_table\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 10\u001b[0m count \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;241m1\u001b[39m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1519\u001b[0m, in \u001b[0;36mLanceTable.add\u001b[0;34m(self, data, mode, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 1516\u001b[0m \u001b[38;5;66;03m# Access the dataset_mut property to ensure that the dataset is mutable.\u001b[39;00m\n\u001b[1;32m 1517\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_ref\u001b[38;5;241m.\u001b[39mdataset_mut\n\u001b[1;32m 1518\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_ref\u001b[38;5;241m.\u001b[39mdataset \u001b[38;5;241m=\u001b[39m lance\u001b[38;5;241m.\u001b[39mwrite_dataset(\n\u001b[0;32m-> 1519\u001b[0m data, \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_dataset_uri, schema\u001b[38;5;241m=\u001b[39m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m, mode\u001b[38;5;241m=\u001b[39mmode\n\u001b[1;32m 1520\u001b[0m )\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1117\u001b[0m, in \u001b[0;36mLanceTable.schema\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 1109\u001b[0m \u001b[38;5;129m@property\u001b[39m\n\u001b[1;32m 1110\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mschema\u001b[39m(\u001b[38;5;28mself\u001b[39m) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m pa\u001b[38;5;241m.\u001b[39mSchema:\n\u001b[1;32m 1111\u001b[0m \u001b[38;5;250m \u001b[39m\u001b[38;5;124;03m\"\"\"Return the schema of the table.\u001b[39;00m\n\u001b[1;32m 1112\u001b[0m \n\u001b[1;32m 1113\u001b[0m \u001b[38;5;124;03m Returns\u001b[39;00m\n\u001b[1;32m 1114\u001b[0m \u001b[38;5;124;03m -------\u001b[39;00m\n\u001b[1;32m 1115\u001b[0m \u001b[38;5;124;03m pa.Schema\u001b[39;00m\n\u001b[1;32m 1116\u001b[0m \u001b[38;5;124;03m A PyArrow schema object.\"\"\"\u001b[39;00m\n\u001b[0;32m-> 1117\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_dataset\u001b[49m\u001b[38;5;241m.\u001b[39mschema\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1099\u001b[0m, in \u001b[0;36mLanceTable._dataset\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 1097\u001b[0m \u001b[38;5;129m@property\u001b[39m\n\u001b[1;32m 1098\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21m_dataset\u001b[39m(\u001b[38;5;28mself\u001b[39m) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m LanceDataset:\n\u001b[0;32m-> 1099\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_ref\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mdataset\u001b[49m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:984\u001b[0m, in \u001b[0;36m_LanceLatestDatasetRef.dataset\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 981\u001b[0m \u001b[38;5;129m@property\u001b[39m\n\u001b[1;32m 982\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mdataset\u001b[39m(\u001b[38;5;28mself\u001b[39m) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m LanceDataset:\n\u001b[1;32m 983\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_dataset:\n\u001b[0;32m--> 984\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_dataset \u001b[38;5;241m=\u001b[39m \u001b[43mlance\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mdataset\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 985\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43muri\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mindex_cache_size\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mindex_cache_size\u001b[49m\n\u001b[1;32m 986\u001b[0m \u001b[43m \u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 987\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mlast_consistency_check \u001b[38;5;241m=\u001b[39m time\u001b[38;5;241m.\u001b[39mmonotonic()\n\u001b[1;32m 988\u001b[0m \u001b[38;5;28;01melif\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mread_consistency_interval \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lance/__init__.py:92\u001b[0m, in \u001b[0;36mdataset\u001b[0;34m(uri, version, asof, block_size, commit_lock, index_cache_size, storage_options)\u001b[0m\n\u001b[1;32m 50\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mdataset\u001b[39m(\n\u001b[1;32m 51\u001b[0m uri: Union[\u001b[38;5;28mstr\u001b[39m, Path],\n\u001b[1;32m 52\u001b[0m version: Optional[\u001b[38;5;28mint\u001b[39m \u001b[38;5;241m|\u001b[39m \u001b[38;5;28mstr\u001b[39m] \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m,\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 57\u001b[0m storage_options: Optional[Dict[\u001b[38;5;28mstr\u001b[39m, \u001b[38;5;28mstr\u001b[39m]] \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m,\n\u001b[1;32m 58\u001b[0m ) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m LanceDataset:\n\u001b[1;32m 59\u001b[0m \u001b[38;5;250m \u001b[39m\u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m 60\u001b[0m \u001b[38;5;124;03m Opens the Lance dataset from the address specified.\u001b[39;00m\n\u001b[1;32m 61\u001b[0m \n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 90\u001b[0m \u001b[38;5;124;03m used to store connection parameters like credentials, endpoint, etc.\u001b[39;00m\n\u001b[1;32m 91\u001b[0m \u001b[38;5;124;03m \"\"\"\u001b[39;00m\n\u001b[0;32m---> 92\u001b[0m ds \u001b[38;5;241m=\u001b[39m \u001b[43mLanceDataset\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 93\u001b[0m \u001b[43m \u001b[49m\u001b[43muri\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 94\u001b[0m \u001b[43m \u001b[49m\u001b[43mversion\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 95\u001b[0m \u001b[43m \u001b[49m\u001b[43mblock_size\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 96\u001b[0m \u001b[43m \u001b[49m\u001b[43mcommit_lock\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mcommit_lock\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 97\u001b[0m \u001b[43m \u001b[49m\u001b[43mindex_cache_size\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mindex_cache_size\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 98\u001b[0m \u001b[43m \u001b[49m\u001b[43mstorage_options\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mstorage_options\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 99\u001b[0m \u001b[43m \u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 100\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m version \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m \u001b[38;5;129;01mand\u001b[39;00m asof \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[1;32m 101\u001b[0m ts_cutoff \u001b[38;5;241m=\u001b[39m sanitize_ts(asof)\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lance/dataset.py:166\u001b[0m, in \u001b[0;36mLanceDataset.__init__\u001b[0;34m(self, uri, version, block_size, index_cache_size, metadata_cache_size, commit_lock, storage_options, serialized_manifest)\u001b[0m\n\u001b[1;32m 164\u001b[0m uri \u001b[38;5;241m=\u001b[39m os\u001b[38;5;241m.\u001b[39mfspath(uri) \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;28misinstance\u001b[39m(uri, Path) \u001b[38;5;28;01melse\u001b[39;00m uri\n\u001b[1;32m 165\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_uri \u001b[38;5;241m=\u001b[39m uri\n\u001b[0;32m--> 166\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_ds \u001b[38;5;241m=\u001b[39m \u001b[43m_Dataset\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 167\u001b[0m \u001b[43m \u001b[49m\u001b[43muri\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 168\u001b[0m \u001b[43m \u001b[49m\u001b[43mversion\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 169\u001b[0m \u001b[43m \u001b[49m\u001b[43mblock_size\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 170\u001b[0m \u001b[43m \u001b[49m\u001b[43mindex_cache_size\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 171\u001b[0m \u001b[43m \u001b[49m\u001b[43mmetadata_cache_size\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 172\u001b[0m \u001b[43m \u001b[49m\u001b[43mcommit_lock\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 173\u001b[0m \u001b[43m \u001b[49m\u001b[43mstorage_options\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 174\u001b[0m \u001b[43m \u001b[49m\u001b[43mserialized_manifest\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 175\u001b[0m \u001b[43m\u001b[49m\u001b[43m)\u001b[49m\n", - "\u001b[0;31mKeyboardInterrupt\u001b[0m: " + "\u001b[0;31mKeyError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[7], line 9\u001b[0m\n\u001b[1;32m 6\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m chunk_table \u001b[38;5;129;01min\u001b[39;00m process_in_chunks(generator, chunk_size\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m5000000\u001b[39m):\n\u001b[1;32m 7\u001b[0m \u001b[38;5;66;03m# add the chunk to the table\u001b[39;00m\n\u001b[1;32m 8\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mAdding chunk \u001b[39m\u001b[38;5;132;01m{\u001b[39;00mcount\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m\"\u001b[39m)\n\u001b[0;32m----> 9\u001b[0m \u001b[43mtable\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43madd\u001b[49m\u001b[43m(\u001b[49m\u001b[43mchunk_table\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 10\u001b[0m count \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;241m1\u001b[39m\n\u001b[1;32m 11\u001b[0m \u001b[38;5;28;01mbreak\u001b[39;00m\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1509\u001b[0m, in \u001b[0;36mLanceTable.add\u001b[0;34m(self, data, mode, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 1485\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m\"\"\"Add data to the table.\u001b[39;00m\n\u001b[1;32m 1486\u001b[0m \u001b[38;5;124;03mIf vector columns are missing and the table\u001b[39;00m\n\u001b[1;32m 1487\u001b[0m \u001b[38;5;124;03mhas embedding functions, then the vector columns\u001b[39;00m\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 1506\u001b[0m \u001b[38;5;124;03m The number of vectors in the table.\u001b[39;00m\n\u001b[1;32m 1507\u001b[0m \u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m 1508\u001b[0m \u001b[38;5;66;03m# TODO: manage table listing and metadata separately\u001b[39;00m\n\u001b[0;32m-> 1509\u001b[0m data, _ \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_data\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 1510\u001b[0m \u001b[43m \u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1511\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1512\u001b[0m \u001b[43m \u001b[49m\u001b[43mmetadata\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmetadata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1513\u001b[0m \u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1514\u001b[0m \u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mfill_value\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1515\u001b[0m \u001b[43m\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 1516\u001b[0m \u001b[38;5;66;03m# Access the dataset_mut property to ensure that the dataset is mutable.\u001b[39;00m\n\u001b[1;32m 1517\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_ref\u001b[38;5;241m.\u001b[39mdataset_mut\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:154\u001b[0m, in \u001b[0;36m_sanitize_data\u001b[0;34m(data, schema, metadata, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 151\u001b[0m data \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mreplace_schema_metadata(metadata)\n\u001b[1;32m 153\u001b[0m \u001b[38;5;66;03m# TODO improve the logics in _sanitize_schema\u001b[39;00m\n\u001b[0;32m--> 154\u001b[0m data \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_schema\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 155\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m schema \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[1;32m 156\u001b[0m schema \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mschema\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:2034\u001b[0m, in \u001b[0;36m_sanitize_schema\u001b[0;34m(data, schema, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 2024\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m field\u001b[38;5;241m.\u001b[39mname \u001b[38;5;129;01min\u001b[39;00m data\u001b[38;5;241m.\u001b[39mcolumn_names \u001b[38;5;129;01mand\u001b[39;00m (\n\u001b[1;32m 2025\u001b[0m likely_vector_col \u001b[38;5;129;01mor\u001b[39;00m is_default_vector_col\n\u001b[1;32m 2026\u001b[0m ):\n\u001b[1;32m 2027\u001b[0m data \u001b[38;5;241m=\u001b[39m _sanitize_vector_column(\n\u001b[1;32m 2028\u001b[0m data,\n\u001b[1;32m 2029\u001b[0m vector_column_name\u001b[38;5;241m=\u001b[39mfield\u001b[38;5;241m.\u001b[39mname,\n\u001b[1;32m 2030\u001b[0m on_bad_vectors\u001b[38;5;241m=\u001b[39mon_bad_vectors,\n\u001b[1;32m 2031\u001b[0m fill_value\u001b[38;5;241m=\u001b[39mfill_value,\n\u001b[1;32m 2032\u001b[0m )\n\u001b[1;32m 2033\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m pa\u001b[38;5;241m.\u001b[39mTable\u001b[38;5;241m.\u001b[39mfrom_arrays(\n\u001b[0;32m-> 2034\u001b[0m [\u001b[43mdata\u001b[49m\u001b[43m[\u001b[49m\u001b[43mname\u001b[49m\u001b[43m]\u001b[49m \u001b[38;5;28;01mfor\u001b[39;00m name \u001b[38;5;129;01min\u001b[39;00m schema\u001b[38;5;241m.\u001b[39mnames], schema\u001b[38;5;241m=\u001b[39mschema\n\u001b[1;32m 2035\u001b[0m )\n\u001b[1;32m 2037\u001b[0m \u001b[38;5;66;03m# just check the vector column\u001b[39;00m\n\u001b[1;32m 2038\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m VECTOR_COLUMN_NAME \u001b[38;5;129;01min\u001b[39;00m data\u001b[38;5;241m.\u001b[39mcolumn_names:\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1693\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular.__getitem__\u001b[0;34m()\u001b[0m\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1779\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular.column\u001b[0;34m()\u001b[0m\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1715\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular._ensure_integer_index\u001b[0;34m()\u001b[0m\n", + "\u001b[0;31mKeyError\u001b[0m: 'Field \"node_ids\" does not exist in schema'" ] } ], diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py index bcd2458..6b8fadf 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py @@ -155,6 +155,7 @@ def process_in_chunks( target_id=int(str(table_genes[0][0])), metapath=str(table_metapaths[0][0]), ) +sample_result # + # create results folder From 1689e8f5312f677ac58fa950e5b3ea4e552488fe Mon Sep 17 00:00:00 2001 From: d33bs Date: Wed, 6 Nov 2024 06:18:17 -0700 Subject: [PATCH 05/11] add expected storage --- .../gather_data.ipynb | 29 +++++++++++++++++-- .../gather_data.py | 11 ++++++- 2 files changed, 37 insertions(+), 3 deletions(-) diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb index d2de19f..1fdbd37 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb @@ -214,7 +214,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": 13, "id": "1b75acd4-2bb3-4adf-a851-d758e75b22b6", "metadata": {}, "outputs": [ @@ -234,7 +234,11 @@ "\n", "print(\n", " \"Expected number of queries: \",\n", - " table_bioprocesses.num_rows * table_genes.num_rows * table_metapaths.num_rows,\n", + " (\n", + " expected_queries := table_bioprocesses.num_rows\n", + " * table_genes.num_rows\n", + " * table_metapaths.num_rows\n", + " ),\n", ")" ] }, @@ -457,6 +461,27 @@ "sample_result" ] }, + { + "cell_type": "code", + "execution_count": 16, + "id": "4701c45d-183c-423a-ac69-0322d13e9751", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Expected storage: 9390.771764796227\n" + ] + } + ], + "source": [ + "print(\n", + " \"Expected storage: \",\n", + " (sample_result.memory_usage().sum() * expected_queries) / 1024 / 1024 / 1024,\n", + ")" + ] + }, { "cell_type": "code", "execution_count": 6, diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py index 6b8fadf..0642d7b 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py @@ -145,7 +145,11 @@ def process_in_chunks( print( "Expected number of queries: ", - table_bioprocesses.num_rows * table_genes.num_rows * table_metapaths.num_rows, + ( + expected_queries := table_bioprocesses.num_rows + * table_genes.num_rows + * table_metapaths.num_rows + ), ) # - @@ -157,6 +161,11 @@ def process_in_chunks( ) sample_result +print( + "Expected storage: ", + (sample_result.memory_usage().sum() * expected_queries) / 1024 / 1024 / 1024, +) + # + # create results folder pathlib.Path("data/results").mkdir(exist_ok=True) From affa89a549ec8173d5daf1f69271f7d4fd311ca2 Mon Sep 17 00:00:00 2001 From: d33bs Date: Wed, 6 Nov 2024 10:26:52 -0700 Subject: [PATCH 06/11] remove authentication for read-only server --- src/hetionet_utils/database.py | 9 ++------- 1 file changed, 2 insertions(+), 7 deletions(-) diff --git a/src/hetionet_utils/database.py b/src/hetionet_utils/database.py index 181a311..4b8ed3e 100644 --- a/src/hetionet_utils/database.py +++ b/src/hetionet_utils/database.py @@ -23,8 +23,7 @@ class HetionetNeo4j: def __init__( self: Self, uri: str = "bolt://neo4j.het.io:7687", - user: str = "neo4j", - password: str = "neo4j", + ) -> None: """ Initialize the HetionetNeo4j class with a connection @@ -33,12 +32,8 @@ def __init__( Args: uri (str): The URI of the Neo4j database. - user (str): - The username for the Neo4j database. - password (str): - The password for the Neo4j database. """ - self.driver = GraphDatabase.driver(uri, auth=(user, password)) + self.driver = GraphDatabase.driver(uri, auth=None) self.query_node_identifier_to_neo4j_id = """ MATCH (node) WHERE From 4a7cf585b591512967517b25efecf9e852d7446e Mon Sep 17 00:00:00 2001 From: d33bs Date: Fri, 8 Nov 2024 15:25:38 -0700 Subject: [PATCH 07/11] progress --- .../gather_all_data.ipynb | 511 ++++++++++++++++++ .../gather_all_data.py | 129 +++++ ...ther_subset_data_metapath_ BPpGdAdG.ipynb} | 64 +-- ... gather_subset_data_metapath_ BPpGdAdG.py} | 44 +- src/hetionet_utils/combination.py | 147 +++++ src/hetionet_utils/database.py | 1 - tests/test_combinations.py | 155 ++++++ tests/test_database.py | 2 +- 8 files changed, 997 insertions(+), 56 deletions(-) create mode 100644 src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.ipynb create mode 100644 src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.py rename src/bioprocess_metapath_to_gene_pval_and_dwpc/{gather_data.ipynb => gather_subset_data_metapath_ BPpGdAdG.ipynb} (95%) rename src/bioprocess_metapath_to_gene_pval_and_dwpc/{gather_data.py => gather_subset_data_metapath_ BPpGdAdG.py} (86%) create mode 100644 src/hetionet_utils/combination.py create mode 100644 tests/test_combinations.py diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.ipynb b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.ipynb new file mode 100644 index 0000000..122e793 --- /dev/null +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.ipynb @@ -0,0 +1,511 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "id": "5fc183d5-7a0d-4a1a-b0b5-c87a5f54214b", + "metadata": {}, + "source": [ + "# Biological Process and Gene Metapath Data Gathering - All\n", + "\n", + "This notebook focuses on gathering **all** data related to the following requirements:\n", + "\n", + "- Each value from `BP.csv` is a source and each value\n", + "from `Gene.csv` is a target.\n", + "- Each source + target pairing may have a metapath which\n", + "is found within `metapaths.csv`.\n", + "- For each pair metapath we need the DWPC and p-value\n", + "stored in a table for reference.\n", + "- Ignore metapaths found within\n", + "`metapaths_ignore.csv`." + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "cb23bdc3-241a-47e0-8016-0533730762b6", + "metadata": {}, + "outputs": [], + "source": [ + "import pathlib\n", + "from itertools import product\n", + "from typing import Generator, Iterator, Tuple\n", + "\n", + "import lancedb\n", + "import pandas as pd\n", + "import pyarrow as pa\n", + "from pyarrow import csv\n", + "\n", + "from hetionet_utils.database import HetionetNeo4j" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "22142383-8ae8-4c3a-b5ac-17c9f2dfc409", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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metapathnode_idsrel_idsPDPpercent_of_DWPCscorePCDWPC
0BPpGdAdG[40731, 21753, 36969, 16764][1390556, 865578, 2128874]0.00000416.997932-0.0NaNNaN
1BPpGdAdG[40731, 32551, 36969, 16764][1196717, 11354, 2128874]0.00000416.778595-0.012.00.000025
2BPpGdAdG[40731, 39858, 36969, 16764][1220136, 2096090, 2128874]0.0000029.334748-0.012.00.000025
3BPpGdAdG[40731, 8043, 36969, 16764][1153859, 1995416, 2128874]0.0000028.169678-0.012.00.000025
4BPpGdAdG[40731, 30743, 11763, 16764][1837396, 1950404, 1188329]0.0000027.757325-0.012.00.000025
5BPpGdAdG[40731, 10526, 36969, 16764][132194, 85560, 2128874]0.0000027.532643-0.012.00.000025
6BPpGdAdG[40731, 45057, 36969, 16764][1985929, 450350, 2128874]0.0000026.985486-0.012.00.000025
7BPpGdAdG[40731, 12891, 11763, 16764][1079500, 2053410, 1188329]0.0000026.545380-0.012.00.000025
8BPpGdAdG[40731, 20458, 36969, 16764][18158, 962402, 2128874]0.0000016.009676-0.012.00.000025
9BPpGdAdG[40731, 9350, 36969, 16764][2091178, 285298, 2128874]0.0000014.833247-0.012.00.000025
10BPpGdAdG[40731, 9740, 36969, 16764][2030417, 658582, 2128874]0.0000014.619502-0.012.00.000025
11BPpGdAdG[40731, 22854, 36969, 16764][1414951, 1871571, 2128874]0.0000014.435788-0.012.00.000025
\n", + "
" + ], + "text/plain": [ + " metapath node_ids rel_ids \\\n", + "0 BPpGdAdG [40731, 21753, 36969, 16764] [1390556, 865578, 2128874] \n", + "1 BPpGdAdG [40731, 32551, 36969, 16764] [1196717, 11354, 2128874] \n", + "2 BPpGdAdG [40731, 39858, 36969, 16764] [1220136, 2096090, 2128874] \n", + "3 BPpGdAdG [40731, 8043, 36969, 16764] [1153859, 1995416, 2128874] \n", + "4 BPpGdAdG [40731, 30743, 11763, 16764] [1837396, 1950404, 1188329] \n", + "5 BPpGdAdG [40731, 10526, 36969, 16764] [132194, 85560, 2128874] \n", + "6 BPpGdAdG [40731, 45057, 36969, 16764] [1985929, 450350, 2128874] \n", + "7 BPpGdAdG [40731, 12891, 11763, 16764] [1079500, 2053410, 1188329] \n", + "8 BPpGdAdG [40731, 20458, 36969, 16764] [18158, 962402, 2128874] \n", + "9 BPpGdAdG [40731, 9350, 36969, 16764] [2091178, 285298, 2128874] \n", + "10 BPpGdAdG [40731, 9740, 36969, 16764] [2030417, 658582, 2128874] \n", + "11 BPpGdAdG [40731, 22854, 36969, 16764] [1414951, 1871571, 2128874] \n", + "\n", + " PDP percent_of_DWPC score PC DWPC \n", + "0 0.000004 16.997932 -0.0 NaN NaN \n", + "1 0.000004 16.778595 -0.0 12.0 0.000025 \n", + "2 0.000002 9.334748 -0.0 12.0 0.000025 \n", + "3 0.000002 8.169678 -0.0 12.0 0.000025 \n", + "4 0.000002 7.757325 -0.0 12.0 0.000025 \n", + "5 0.000002 7.532643 -0.0 12.0 0.000025 \n", + "6 0.000002 6.985486 -0.0 12.0 0.000025 \n", + "7 0.000002 6.545380 -0.0 12.0 0.000025 \n", + "8 0.000001 6.009676 -0.0 12.0 0.000025 \n", + "9 0.000001 4.833247 -0.0 12.0 0.000025 \n", + "10 0.000001 4.619502 -0.0 12.0 0.000025 \n", + "11 0.000001 4.435788 -0.0 12.0 0.000025 " + ] + }, + "execution_count": 6, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "hetiocli = HetionetNeo4j()\n", + "sample_result = hetiocli.get_metapath_data(\n", + " source_id=str(table_bioprocesses[0][0]),\n", + " target_id=int(str(table_genes[0][0])),\n", + " metapath=str(table_metapaths[0][0]),\n", + ")\n", + "sample_result" + ] + }, + { + "cell_type": "code", + "execution_count": 15, + "id": "4701c45d-183c-423a-ac69-0322d13e9751", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Expected storage: 63617.26161106955 GB\n" + ] + } + ], + "source": [ + "# export to file and measure the size\n", + "sample_result.to_parquet((filepath := \"example_output.parquet\"))\n", + "print(\n", + " \"Expected storage: \",\n", + " (\n", + " # bytes\n", + " pathlib.Path(filepath).stat().st_size\n", + " *\n", + " # multiplied by the number of expected queries we need to make\n", + " expected_queries\n", + " )\n", + " /\n", + " # kilobytes\n", + " 1024 /\n", + " # megabytes\n", + " 1024 /\n", + " # gigabytes\n", + " 1024,\n", + " \"GB\",\n", + ")" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "61dc2f7e-c6d0-4f4a-87e7-f9a5d8309f89", + "metadata": {}, + "outputs": [], + "source": [ + "# create results folder\n", + "pathlib.Path(\"data/results\").mkdir(exist_ok=True)\n", + "\n", + "# Initialize your LanceDB database and table\n", + "db = lancedb.connect(\"data/results/bioprocess_and_gene_metapaths\")\n", + "table_name = \"bioprocess_gene_metapath_scores\"\n", + "\n", + "# create table, overwriting previous results\n", + "db.create_table(\n", + " table_name,\n", + " schema=pa.Table.from_pandas(sample_result).schema,\n", + " mode=\"overwrite\",\n", + ")\n", + "\n", + "table = db.open_table(table_name)" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "ea0c56c1-ef9c-487b-80ae-296a55b2682a", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Adding chunk 1\n" + ] + }, + { + "ename": "KeyError", + "evalue": "'Field \"node_ids\" does not exist in schema'", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mKeyError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[7], line 9\u001b[0m\n\u001b[1;32m 6\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m chunk_table \u001b[38;5;129;01min\u001b[39;00m process_in_chunks(generator, chunk_size\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m5000000\u001b[39m):\n\u001b[1;32m 7\u001b[0m \u001b[38;5;66;03m# add the chunk to the table\u001b[39;00m\n\u001b[1;32m 8\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mAdding chunk \u001b[39m\u001b[38;5;132;01m{\u001b[39;00mcount\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m\"\u001b[39m)\n\u001b[0;32m----> 9\u001b[0m \u001b[43mtable\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43madd\u001b[49m\u001b[43m(\u001b[49m\u001b[43mchunk_table\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 10\u001b[0m count \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;241m1\u001b[39m\n\u001b[1;32m 11\u001b[0m \u001b[38;5;28;01mbreak\u001b[39;00m\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1509\u001b[0m, in \u001b[0;36mLanceTable.add\u001b[0;34m(self, data, mode, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 1485\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m\"\"\"Add data to the table.\u001b[39;00m\n\u001b[1;32m 1486\u001b[0m \u001b[38;5;124;03mIf vector columns are missing and the table\u001b[39;00m\n\u001b[1;32m 1487\u001b[0m \u001b[38;5;124;03mhas embedding functions, then the vector columns\u001b[39;00m\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 1506\u001b[0m \u001b[38;5;124;03m The number of vectors in the table.\u001b[39;00m\n\u001b[1;32m 1507\u001b[0m \u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m 1508\u001b[0m \u001b[38;5;66;03m# TODO: manage table listing and metadata separately\u001b[39;00m\n\u001b[0;32m-> 1509\u001b[0m data, _ \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_data\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 1510\u001b[0m \u001b[43m \u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1511\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1512\u001b[0m \u001b[43m \u001b[49m\u001b[43mmetadata\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmetadata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1513\u001b[0m \u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1514\u001b[0m \u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mfill_value\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1515\u001b[0m \u001b[43m\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 1516\u001b[0m \u001b[38;5;66;03m# Access the dataset_mut property to ensure that the dataset is mutable.\u001b[39;00m\n\u001b[1;32m 1517\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_ref\u001b[38;5;241m.\u001b[39mdataset_mut\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:154\u001b[0m, in \u001b[0;36m_sanitize_data\u001b[0;34m(data, schema, metadata, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 151\u001b[0m data \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mreplace_schema_metadata(metadata)\n\u001b[1;32m 153\u001b[0m \u001b[38;5;66;03m# TODO improve the logics in _sanitize_schema\u001b[39;00m\n\u001b[0;32m--> 154\u001b[0m data \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_schema\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 155\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m schema \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[1;32m 156\u001b[0m schema \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mschema\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:2034\u001b[0m, in \u001b[0;36m_sanitize_schema\u001b[0;34m(data, schema, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 2024\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m field\u001b[38;5;241m.\u001b[39mname \u001b[38;5;129;01min\u001b[39;00m data\u001b[38;5;241m.\u001b[39mcolumn_names \u001b[38;5;129;01mand\u001b[39;00m (\n\u001b[1;32m 2025\u001b[0m likely_vector_col \u001b[38;5;129;01mor\u001b[39;00m is_default_vector_col\n\u001b[1;32m 2026\u001b[0m ):\n\u001b[1;32m 2027\u001b[0m data \u001b[38;5;241m=\u001b[39m _sanitize_vector_column(\n\u001b[1;32m 2028\u001b[0m data,\n\u001b[1;32m 2029\u001b[0m vector_column_name\u001b[38;5;241m=\u001b[39mfield\u001b[38;5;241m.\u001b[39mname,\n\u001b[1;32m 2030\u001b[0m on_bad_vectors\u001b[38;5;241m=\u001b[39mon_bad_vectors,\n\u001b[1;32m 2031\u001b[0m fill_value\u001b[38;5;241m=\u001b[39mfill_value,\n\u001b[1;32m 2032\u001b[0m )\n\u001b[1;32m 2033\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m pa\u001b[38;5;241m.\u001b[39mTable\u001b[38;5;241m.\u001b[39mfrom_arrays(\n\u001b[0;32m-> 2034\u001b[0m [\u001b[43mdata\u001b[49m\u001b[43m[\u001b[49m\u001b[43mname\u001b[49m\u001b[43m]\u001b[49m \u001b[38;5;28;01mfor\u001b[39;00m name \u001b[38;5;129;01min\u001b[39;00m schema\u001b[38;5;241m.\u001b[39mnames], schema\u001b[38;5;241m=\u001b[39mschema\n\u001b[1;32m 2035\u001b[0m )\n\u001b[1;32m 2037\u001b[0m \u001b[38;5;66;03m# just check the vector column\u001b[39;00m\n\u001b[1;32m 2038\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m VECTOR_COLUMN_NAME \u001b[38;5;129;01min\u001b[39;00m data\u001b[38;5;241m.\u001b[39mcolumn_names:\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1693\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular.__getitem__\u001b[0;34m()\u001b[0m\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1779\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular.column\u001b[0;34m()\u001b[0m\n", + "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1715\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular._ensure_integer_index\u001b[0;34m()\u001b[0m\n", + "\u001b[0;31mKeyError\u001b[0m: 'Field \"node_ids\" does not exist in schema'" + ] + } + ], + "source": [ + "# Generate combinations\n", + "generator = generate_combinations(table_bioprocesses, table_genes, table_metapaths)\n", + "\n", + "count = 1\n", + "# Process and print chunks\n", + "for chunk_table in process_in_chunks(generator, chunk_size=5000000):\n", + " # add the chunk to the table\n", + " print(f\"Adding chunk {count}\")\n", + " table.add(chunk_table)\n", + " count += 1\n", + " break" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "828431ff-398c-4c23-9fa7-f65a3925597e", + "metadata": {}, + "outputs": [], + "source": [ + "# After inserting all chunks, show the shape of the table\n", + "num_rows = table.count()\n", + "num_columns = len(table.schema().names)\n", + "\n", + "print(f\"Table shape: ({num_rows}, {num_columns})\")" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.5" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.py b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.py new file mode 100644 index 0000000..4e27b68 --- /dev/null +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.py @@ -0,0 +1,129 @@ +# --- +# jupyter: +# jupytext: +# text_representation: +# extension: .py +# format_name: light +# format_version: '1.5' +# jupytext_version: 1.16.4 +# kernelspec: +# display_name: Python 3 (ipykernel) +# language: python +# name: python3 +# --- + +# # Biological Process and Gene Metapath Data Gathering - All +# +# This notebook focuses on gathering **all** data related to the following requirements: +# +# - Each value from `BP.csv` is a source and each value +# from `Gene.csv` is a target. +# - Each source + target pairing may have a metapath which +# is found within `metapaths.csv`. +# - For each pair metapath we need the DWPC and p-value +# stored in a table for reference. +# - Ignore metapaths found within +# `metapaths_ignore.csv`. + +# + +import pathlib +from itertools import product +from typing import Generator, Iterator, Tuple + +import lancedb +import pandas as pd +import pyarrow as pa +from pyarrow import csv + +from hetionet_utils.database import HetionetNeo4j +# - + +# gather metapaths which are not in the metapaths_ignore.csv +df_metapaths = pd.read_csv("data/sources/metapaths.csv") +df_metapaths_ignore = pd.read_csv("data/sources/metapaths_ignore.csv") +df_metapaths = df_metapaths[ + ~df_metapaths["metapath"].isin(df_metapaths_ignore["metapath"]) +] +df_metapaths.head() + +# + +# Load input CSV files into Arrow Tables +table_bioprocesses = csv.read_csv("data/sources/BP.csv").select(["id"]) +table_genes = csv.read_csv("data/sources/Gene.csv").select(["id"]) +table_metapaths = pa.Table.from_pandas(df_metapaths) + +print( + "Expected number of queries: ", + ( + expected_queries := table_bioprocesses.num_rows + * table_genes.num_rows + * table_metapaths.num_rows + ), +) +# - + +hetiocli = HetionetNeo4j() +sample_result = hetiocli.get_metapath_data( + source_id=str(table_bioprocesses[0][0]), + target_id=int(str(table_genes[0][0])), + metapath=str(table_metapaths[0][0]), +) +sample_result + +# export to file and measure the size +sample_result.to_parquet((filepath := "example_output.parquet")) +print( + "Expected storage: ", + ( + # bytes + pathlib.Path(filepath).stat().st_size + * + # multiplied by the number of expected queries we need to make + expected_queries + ) + / + # kilobytes + 1024 / + # megabytes + 1024 / + # gigabytes + 1024, + "GB", +) + +# + +# create results folder +pathlib.Path("data/results").mkdir(exist_ok=True) + +# Initialize your LanceDB database and table +db = lancedb.connect("data/results/bioprocess_and_gene_metapaths") +table_name = "bioprocess_gene_metapath_scores" + +# create table, overwriting previous results +db.create_table( + table_name, + schema=pa.Table.from_pandas(sample_result).schema, + mode="overwrite", +) + +table = db.open_table(table_name) + +# + +# Generate combinations +generator = generate_combinations(table_bioprocesses, table_genes, table_metapaths) + +count = 1 +# Process and print chunks +for chunk_table in process_in_chunks(generator, chunk_size=5000000): + # add the chunk to the table + print(f"Adding chunk {count}") + table.add(chunk_table) + count += 1 + break + +# + +# After inserting all chunks, show the shape of the table +num_rows = table.count() +num_columns = len(table.schema().names) + +print(f"Table shape: ({num_rows}, {num_columns})") diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.ipynb similarity index 95% rename from src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb rename to src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.ipynb index 1fdbd37..8fc9c8f 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.ipynb +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.ipynb @@ -5,10 +5,12 @@ "id": "5fc183d5-7a0d-4a1a-b0b5-c87a5f54214b", "metadata": {}, "source": [ - "# Biological Process and Gene Metapath Data Gathering\n", + "# Biological Process and Gene Metapath Data Gathering - Subset - Metapath BPpGdAdG\n", + "\n", + "This notebook focuses on gathering **a subset** of data related to the following requirements and **focusing on metapath BPpGdAdG**:\n", "\n", "- Each value from `BP.csv` is a source and each value\n", - "from `Gene.csv` is a target. \n", + "from `Gene.csv` is a target.\n", "- Each source + target pairing may have a metapath which\n", "is found within `metapaths.csv`.\n", "- For each pair metapath we need the DWPC and p-value\n", @@ -19,7 +21,7 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": 2, "id": "cb23bdc3-241a-47e0-8016-0533730762b6", "metadata": {}, "outputs": [], @@ -38,29 +40,11 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": 3, "id": "33492577-2f44-404f-b866-f76a54de28ba", "metadata": {}, "outputs": [], "source": [ - "def load_arrow_table_from_csv_column(file_path: str, column_name: str) -> pa.Table:\n", - " \"\"\"\n", - " Loads a single-column Arrow Table from a CSV file.\n", - "\n", - " Args:\n", - " file_path (str):\n", - " The path to the CSV file.\n", - " column_name (str):\n", - " The name of the column to extract.\n", - "\n", - " Returns:\n", - " pa.Table:\n", - " Arrow Table with the specified column.\n", - " \"\"\"\n", - " table = csv.read_csv(file_path)\n", - " return table.select([column_name])\n", - "\n", - "\n", "def generate_combinations(\n", " table_bioprocesses: pa.Table, table_genes: pa.Table, table_metapaths: pa.Table\n", ") -> Generator[Tuple[str, str, str], None, None]:\n", @@ -135,7 +119,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": 4, "id": "22142383-8ae8-4c3a-b5ac-17c9f2dfc409", "metadata": {}, "outputs": [ @@ -197,7 +181,7 @@ "9 BPpGeAeG" ] }, - "execution_count": 3, + "execution_count": 4, "metadata": {}, "output_type": "execute_result" } @@ -214,7 +198,7 @@ }, { "cell_type": "code", - "execution_count": 13, + "execution_count": 5, "id": "1b75acd4-2bb3-4adf-a851-d758e75b22b6", "metadata": {}, "outputs": [ @@ -228,8 +212,8 @@ ], "source": [ "# Load input CSV files into Arrow Tables\n", - "table_bioprocesses = load_arrow_table_from_csv_column(\"data/sources/BP.csv\", \"id\")\n", - "table_genes = load_arrow_table_from_csv_column(\"data/sources/Gene.csv\", \"id\")\n", + "table_bioprocesses = csv.read_csv(\"data/sources/BP.csv\").select([\"id\"])\n", + "table_genes = csv.read_csv(\"data/sources/Gene.csv\").select([\"id\"])\n", "table_metapaths = pa.Table.from_pandas(df_metapaths)\n", "\n", "print(\n", @@ -244,7 +228,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 6, "id": "258960f1-1ea7-4365-b948-af69c6425d37", "metadata": {}, "outputs": [ @@ -446,7 +430,7 @@ "11 0.000001 4.435788 -0.0 12.0 0.000025 " ] }, - "execution_count": 5, + "execution_count": 6, "metadata": {}, "output_type": "execute_result" } @@ -463,7 +447,7 @@ }, { "cell_type": "code", - "execution_count": 16, + "execution_count": 15, "id": "4701c45d-183c-423a-ac69-0322d13e9751", "metadata": {}, "outputs": [ @@ -471,14 +455,30 @@ "name": "stdout", "output_type": "stream", "text": [ - "Expected storage: 9390.771764796227\n" + "Expected storage: 63617.26161106955 GB\n" ] } ], "source": [ + "# export to file and measure the size\n", + "sample_result.to_parquet((filepath := \"example_output.parquet\"))\n", "print(\n", " \"Expected storage: \",\n", - " (sample_result.memory_usage().sum() * expected_queries) / 1024 / 1024 / 1024,\n", + " (\n", + " # bytes\n", + " pathlib.Path(filepath).stat().st_size\n", + " *\n", + " # multiplied by the number of expected queries we need to make\n", + " expected_queries\n", + " )\n", + " /\n", + " # kilobytes\n", + " 1024 /\n", + " # megabytes\n", + " 1024 /\n", + " # gigabytes\n", + " 1024,\n", + " \"GB\",\n", ")" ] }, diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.py similarity index 86% rename from src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py rename to src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.py index 0642d7b..a629ef7 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_data.py +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.py @@ -12,7 +12,9 @@ # name: python3 # --- -# # Biological Process and Gene Metapath Data Gathering +# # Biological Process and Gene Metapath Data Gathering - Subset - Metapath BPpGdAdG +# +# This notebook focuses on gathering **a subset** of data related to the following requirements and **focusing on metapath BPpGdAdG**: # # - Each value from `BP.csv` is a source and each value # from `Gene.csv` is a target. @@ -37,24 +39,6 @@ # + -def load_arrow_table_from_csv_column(file_path: str, column_name: str) -> pa.Table: - """ - Loads a single-column Arrow Table from a CSV file. - - Args: - file_path (str): - The path to the CSV file. - column_name (str): - The name of the column to extract. - - Returns: - pa.Table: - Arrow Table with the specified column. - """ - table = csv.read_csv(file_path) - return table.select([column_name]) - - def generate_combinations( table_bioprocesses: pa.Table, table_genes: pa.Table, table_metapaths: pa.Table ) -> Generator[Tuple[str, str, str], None, None]: @@ -139,8 +123,8 @@ def process_in_chunks( # + # Load input CSV files into Arrow Tables -table_bioprocesses = load_arrow_table_from_csv_column("data/sources/BP.csv", "id") -table_genes = load_arrow_table_from_csv_column("data/sources/Gene.csv", "id") +table_bioprocesses = csv.read_csv("data/sources/BP.csv").select(["id"]) +table_genes = csv.read_csv("data/sources/Gene.csv").select(["id"]) table_metapaths = pa.Table.from_pandas(df_metapaths) print( @@ -161,9 +145,25 @@ def process_in_chunks( ) sample_result +# export to file and measure the size +sample_result.to_parquet((filepath := "example_output.parquet")) print( "Expected storage: ", - (sample_result.memory_usage().sum() * expected_queries) / 1024 / 1024 / 1024, + ( + # bytes + pathlib.Path(filepath).stat().st_size + * + # multiplied by the number of expected queries we need to make + expected_queries + ) + / + # kilobytes + 1024 / + # megabytes + 1024 / + # gigabytes + 1024, + "GB", ) # + diff --git a/src/hetionet_utils/combination.py b/src/hetionet_utils/combination.py new file mode 100644 index 0000000..63616ae --- /dev/null +++ b/src/hetionet_utils/combination.py @@ -0,0 +1,147 @@ +""" +Focuses on generating combinations from input data. +""" + +from itertools import product +from typing import Generator, Iterator, Tuple + + +import pyarrow as pa + +def generate_combinations_for_bioprocs_genes_and_metapaths( + table_bioprocesses: pa.Table, table_genes: pa.Table, table_metapaths: pa.Table +) -> Generator[Tuple[str, str, str], None, None]: + """ + Generates all possible combinations of IDs from three Arrow tables. + + Args: + table_bioprocesses (pa.Table): + Arrow Table containing bioprocess IDs in an 'id' column. + table_genes (pa.Table): + Arrow Table containing gene IDs in an 'id' column. + table_metapaths (pa.Table): + Arrow Table containing metapath values in a 'metapath' column. + + Yields: + Tuple[str, str, str]: + A tuple with a bioprocess ID, a gene ID, and a metapath value. + """ + for combo in product( + table_bioprocesses["id"].to_pylist(), + table_genes["id"].to_pylist(), + table_metapaths["metapath"].to_pylist(), + ): + yield combo + + +def process_in_chunks_for_bioprocs_genes_and_metapaths( + generator: Iterator[Tuple[str, str, str]], chunk_size: int = 1000 +) -> Iterator[pa.Table]: + """ + Processes combinations from a generator in smaller chunks + as Arrow Tables. + + Args: + generator (Iterator[Tuple[str, str, str]]): + A generator that yields tuples of combinations. + chunk_size (int, optional): + The number of rows per chunk. Defaults to 1000. + + Yields: + pa.Table: + An Arrow Table containing a chunk of combinations + with columns ['source_id', 'target_id', 'metapath']. + """ + chunk = [] + for i, combo in enumerate(generator): + # Convert each combination to a tuple of strings to avoid None values + combo_tuple = tuple(str(x) if x is not None else "" for x in combo) + chunk.append(combo_tuple) + + if (i + 1) % chunk_size == 0: + # Create Arrow Table from the chunk + yield pa.table( + { + "source_id": [row[0] for row in chunk], + "target_id": [row[1] for row in chunk], + "metapath": [row[2] for row in chunk], + } + ) + chunk = [] + + # Yield any remaining combinations as an Arrow Table + if chunk: + yield pa.table( + { + "source_id": [row[0] for row in chunk], + "target_id": [row[1] for row in chunk], + "metapath": [row[2] for row in chunk], + } + ) + + +@pytest.mark.parametrize( + "data, chunk_size, expected_num_chunks, expected_chunk_sizes", + [ + # Test case 1: Data exactly matches one chunk + ( + [("bio1", "gene1", "meta1")] * 5, + 5, + 1, + [5], + ), + + # Test case 2: Data smaller than chunk size + ( + [("bio1", "gene1", "meta1"), ("bio2", "gene2", "meta2")], + 5, + 1, + [2], + ), + + # Test case 3: Data larger than chunk size, even division + ( + [("bio1", "gene1", "meta1")] * 6, + 3, + 2, + [3, 3], + ), + + # Test case 4: Data larger than chunk size, uneven division + ( + [("bio1", "gene1", "meta1")] * 7, + 3, + 3, + [3, 3, 1], + ), + + # Test case 5: Very large chunk size compared to data + ( + [("bio1", "gene1", "meta1"), ("bio2", "gene2", "meta2"), ("bio3", "gene3", "meta3")], + 100, + 1, + [3], + ), + ], +) +def test_process_in_chunks_for_bioprocs_genes_and_metapaths(data, chunk_size, expected_num_chunks, expected_chunk_sizes): + # Create generator for test data + generator = sample_generator(data) + + # Process in chunks and collect the result + result_chunks = list(process_in_chunks_for_bioprocs_genes_and_metapaths(generator, chunk_size=chunk_size)) + + # Check number of chunks generated + assert len(result_chunks) == expected_num_chunks + + # Check sizes of each chunk + for result_chunk, expected_size in zip(result_chunks, expected_chunk_sizes): + assert result_chunk.num_rows == expected_size + + # Check column names and content of the first chunk + if data: + first_chunk = result_chunks[0] + assert first_chunk.column_names == ["source_id", "target_id", "metapath"] + assert first_chunk["source_id"].to_pylist() == [row[0] for row in data[:expected_chunk_sizes[0]]] + assert first_chunk["target_id"].to_pylist() == [row[1] for row in data[:expected_chunk_sizes[0]]] + assert first_chunk["metapath"].to_pylist() == [row[2] for row in data[:expected_chunk_sizes[0]]] diff --git a/src/hetionet_utils/database.py b/src/hetionet_utils/database.py index 4b8ed3e..0d92766 100644 --- a/src/hetionet_utils/database.py +++ b/src/hetionet_utils/database.py @@ -23,7 +23,6 @@ class HetionetNeo4j: def __init__( self: Self, uri: str = "bolt://neo4j.het.io:7687", - ) -> None: """ Initialize the HetionetNeo4j class with a connection diff --git a/tests/test_combinations.py b/tests/test_combinations.py new file mode 100644 index 0000000..a5b0305 --- /dev/null +++ b/tests/test_combinations.py @@ -0,0 +1,155 @@ +""" +Tests for combination.py +""" + +import pyarrow as pa +import pytest +from hetionet_utils.combination import ( + generate_combinations_for_bioprocs_genes_and_metapaths, +) + + +@pytest.mark.parametrize( + "bioprocesses, genes, metapaths, expected_combinations", + [ + # Test case 1: All tables have one element each + (["bio1"], ["gene1"], ["meta1"], [("bio1", "gene1", "meta1")]), + # Test case 2: One table is empty, no combinations should be generated + (["bio1"], [], ["meta1"], []), + # Test case 3: Two elements in each table + ( + ["bio1", "bio2"], + ["gene1", "gene2"], + ["meta1", "meta2"], + [ + ("bio1", "gene1", "meta1"), + ("bio1", "gene1", "meta2"), + ("bio1", "gene2", "meta1"), + ("bio1", "gene2", "meta2"), + ("bio2", "gene1", "meta1"), + ("bio2", "gene1", "meta2"), + ("bio2", "gene2", "meta1"), + ("bio2", "gene2", "meta2"), + ], + ), + # Test case 4: Only one non-empty table (other two are empty) + (["bio1"], [], [], []), + # Test case 5: Larger tables with three elements each to check combination generation + ( + ["bio1", "bio2", "bio3"], + ["gene1", "gene2", "gene3"], + ["meta1", "meta2", "meta3"], + [ + ("bio1", "gene1", "meta1"), + ("bio1", "gene1", "meta2"), + ("bio1", "gene1", "meta3"), + ("bio1", "gene2", "meta1"), + ("bio1", "gene2", "meta2"), + ("bio1", "gene2", "meta3"), + ("bio1", "gene3", "meta1"), + ("bio1", "gene3", "meta2"), + ("bio1", "gene3", "meta3"), + ("bio2", "gene1", "meta1"), + ("bio2", "gene1", "meta2"), + ("bio2", "gene1", "meta3"), + ("bio2", "gene2", "meta1"), + ("bio2", "gene2", "meta2"), + ("bio2", "gene2", "meta3"), + ("bio2", "gene3", "meta1"), + ("bio2", "gene3", "meta2"), + ("bio2", "gene3", "meta3"), + ("bio3", "gene1", "meta1"), + ("bio3", "gene1", "meta2"), + ("bio3", "gene1", "meta3"), + ("bio3", "gene2", "meta1"), + ("bio3", "gene2", "meta2"), + ("bio3", "gene2", "meta3"), + ("bio3", "gene3", "meta1"), + ("bio3", "gene3", "meta2"), + ("bio3", "gene3", "meta3"), + ], + ), + ], +) +def test_generate_combinations_for_bioprocs_genes_and_metapaths( + bioprocesses, genes, metapaths, expected_combinations +): + # Create Arrow tables for the test case + table_bioprocesses = pa.table({"id": bioprocesses}) + table_genes = pa.table({"id": genes}) + table_metapaths = pa.table({"metapath": metapaths}) + + # Generate combinations and compare with expected output + result = list( + generate_combinations_for_bioprocs_genes_and_metapaths( + table_bioprocesses, table_genes, table_metapaths + ) + ) + assert result == expected_combinations + + +@pytest.mark.parametrize( + "data, chunk_size, expected_num_chunks, expected_chunk_sizes", + [ + # Test case 1: Data exactly matches one chunk + ( + [("bio1", "gene1", "meta1")] * 5, + 5, + 1, + [5], + ), + + # Test case 2: Data smaller than chunk size + ( + [("bio1", "gene1", "meta1"), ("bio2", "gene2", "meta2")], + 5, + 1, + [2], + ), + + # Test case 3: Data larger than chunk size, even division + ( + [("bio1", "gene1", "meta1")] * 6, + 3, + 2, + [3, 3], + ), + + # Test case 4: Data larger than chunk size, uneven division + ( + [("bio1", "gene1", "meta1")] * 7, + 3, + 3, + [3, 3, 1], + ), + + # Test case 5: Very large chunk size compared to data + ( + [("bio1", "gene1", "meta1"), ("bio2", "gene2", "meta2"), ("bio3", "gene3", "meta3")], + 100, + 1, + [3], + ), + ], +) +def test_process_in_chunks_for_bioprocs_genes_and_metapaths(data, chunk_size, expected_num_chunks, expected_chunk_sizes): + # Create generator for test data + generator = sample_generator(data) + + # Process in chunks and collect the result + result_chunks = list(process_in_chunks_for_bioprocs_genes_and_metapaths(generator, chunk_size=chunk_size)) + + # Check number of chunks generated + assert len(result_chunks) == expected_num_chunks + + # Check sizes of each chunk + for result_chunk, expected_size in zip(result_chunks, expected_chunk_sizes): + assert result_chunk.num_rows == expected_size + + # Check column names and content of the first chunk + if data: + first_chunk = result_chunks[0] + assert first_chunk.column_names == ["source_id", "target_id", "metapath"] + assert first_chunk["source_id"].to_pylist() == [row[0] for row in data[:expected_chunk_sizes[0]]] + assert first_chunk["target_id"].to_pylist() == [row[1] for row in data[:expected_chunk_sizes[0]]] + assert first_chunk["metapath"].to_pylist() == [row[2] for row in data[:expected_chunk_sizes[0]]] diff --git a/tests/test_database.py b/tests/test_database.py index b60818c..5df1378 100644 --- a/tests/test_database.py +++ b/tests/test_database.py @@ -1,5 +1,5 @@ """ -Tests for the neo4j module. +Tests for database.py """ from hetionet_utils.database import HetionetNeo4j From 19a8a49aa223d3157cd6e9bf7238e203dd7fed88 Mon Sep 17 00:00:00 2001 From: d33bs Date: Fri, 8 Nov 2024 16:37:09 -0700 Subject: [PATCH 08/11] update to run example --- pyproject.toml | 1 + .../gather_all_data.ipynb | 93 +---- .../gather_all_data.py | 48 +-- ...ather_subset_data_metapath_ BPpGdAdG.ipynb | 376 ++++++------------ .../gather_subset_data_metapath_ BPpGdAdG.py | 152 +++---- src/hetionet_utils/combination.py | 73 +--- src/hetionet_utils/database.py | 35 +- tests/test_combinations.py | 62 ++- tests/test_database.py | 2 + tests/utils.py | 22 + uv.lock | 23 +- 11 files changed, 309 insertions(+), 578 deletions(-) create mode 100644 tests/utils.py diff --git a/pyproject.toml b/pyproject.toml index 9fc441a..f818774 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,6 +19,7 @@ dependencies = [ "hetmatpy>=0.1", "ipywidgets>=8.1.5", "isort>=5.13.2", + "joblib>=1.4.2", "jupyterlab>=4.3", "jupyterlab-code-formatter>=3.0.2", "jupytext>=1.16.4", diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.ipynb b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.ipynb index 122e793..d1a00a1 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.ipynb +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.ipynb @@ -27,10 +27,7 @@ "outputs": [], "source": [ "import pathlib\n", - "from itertools import product\n", - "from typing import Generator, Iterator, Tuple\n", "\n", - "import lancedb\n", "import pandas as pd\n", "import pyarrow as pa\n", "from pyarrow import csv\n", @@ -357,6 +354,7 @@ } ], "source": [ + "# build a sample result from HetionetNeo4j\n", "hetiocli = HetionetNeo4j()\n", "sample_result = hetiocli.get_metapath_data(\n", " source_id=str(table_bioprocesses[0][0]),\n", @@ -394,97 +392,16 @@ " )\n", " /\n", " # kilobytes\n", - " 1024 /\n", + " 1024\n", + " /\n", " # megabytes\n", - " 1024 /\n", + " 1024\n", + " /\n", " # gigabytes\n", " 1024,\n", " \"GB\",\n", ")" ] - }, - { - "cell_type": "code", - "execution_count": 6, - "id": "61dc2f7e-c6d0-4f4a-87e7-f9a5d8309f89", - "metadata": {}, - "outputs": [], - "source": [ - "# create results folder\n", - "pathlib.Path(\"data/results\").mkdir(exist_ok=True)\n", - "\n", - "# Initialize your LanceDB database and table\n", - "db = lancedb.connect(\"data/results/bioprocess_and_gene_metapaths\")\n", - "table_name = \"bioprocess_gene_metapath_scores\"\n", - "\n", - "# create table, overwriting previous results\n", - "db.create_table(\n", - " table_name,\n", - " schema=pa.Table.from_pandas(sample_result).schema,\n", - " mode=\"overwrite\",\n", - ")\n", - "\n", - "table = db.open_table(table_name)" - ] - }, - { - "cell_type": "code", - "execution_count": 7, - "id": "ea0c56c1-ef9c-487b-80ae-296a55b2682a", - "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Adding chunk 1\n" - ] - }, - { - "ename": "KeyError", - "evalue": "'Field \"node_ids\" does not exist in schema'", - "output_type": "error", - "traceback": [ - "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", - "\u001b[0;31mKeyError\u001b[0m Traceback (most recent call last)", - "Cell \u001b[0;32mIn[7], line 9\u001b[0m\n\u001b[1;32m 6\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m chunk_table \u001b[38;5;129;01min\u001b[39;00m process_in_chunks(generator, chunk_size\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m5000000\u001b[39m):\n\u001b[1;32m 7\u001b[0m \u001b[38;5;66;03m# add the chunk to the table\u001b[39;00m\n\u001b[1;32m 8\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mAdding chunk \u001b[39m\u001b[38;5;132;01m{\u001b[39;00mcount\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m\"\u001b[39m)\n\u001b[0;32m----> 9\u001b[0m \u001b[43mtable\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43madd\u001b[49m\u001b[43m(\u001b[49m\u001b[43mchunk_table\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 10\u001b[0m count \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;241m1\u001b[39m\n\u001b[1;32m 11\u001b[0m \u001b[38;5;28;01mbreak\u001b[39;00m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1509\u001b[0m, in \u001b[0;36mLanceTable.add\u001b[0;34m(self, data, mode, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 1485\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m\"\"\"Add data to the table.\u001b[39;00m\n\u001b[1;32m 1486\u001b[0m \u001b[38;5;124;03mIf vector columns are missing and the table\u001b[39;00m\n\u001b[1;32m 1487\u001b[0m \u001b[38;5;124;03mhas embedding functions, then the vector columns\u001b[39;00m\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 1506\u001b[0m \u001b[38;5;124;03m The number of vectors in the table.\u001b[39;00m\n\u001b[1;32m 1507\u001b[0m \u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m 1508\u001b[0m \u001b[38;5;66;03m# TODO: manage table listing and metadata separately\u001b[39;00m\n\u001b[0;32m-> 1509\u001b[0m data, _ \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_data\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 1510\u001b[0m \u001b[43m \u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1511\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1512\u001b[0m \u001b[43m \u001b[49m\u001b[43mmetadata\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmetadata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1513\u001b[0m \u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1514\u001b[0m \u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mfill_value\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1515\u001b[0m \u001b[43m\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 1516\u001b[0m \u001b[38;5;66;03m# Access the dataset_mut property to ensure that the dataset is mutable.\u001b[39;00m\n\u001b[1;32m 1517\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_ref\u001b[38;5;241m.\u001b[39mdataset_mut\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:154\u001b[0m, in \u001b[0;36m_sanitize_data\u001b[0;34m(data, schema, metadata, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 151\u001b[0m data \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mreplace_schema_metadata(metadata)\n\u001b[1;32m 153\u001b[0m \u001b[38;5;66;03m# TODO improve the logics in _sanitize_schema\u001b[39;00m\n\u001b[0;32m--> 154\u001b[0m data \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_schema\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 155\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m schema \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[1;32m 156\u001b[0m schema \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mschema\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:2034\u001b[0m, in \u001b[0;36m_sanitize_schema\u001b[0;34m(data, schema, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 2024\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m field\u001b[38;5;241m.\u001b[39mname \u001b[38;5;129;01min\u001b[39;00m data\u001b[38;5;241m.\u001b[39mcolumn_names \u001b[38;5;129;01mand\u001b[39;00m (\n\u001b[1;32m 2025\u001b[0m likely_vector_col \u001b[38;5;129;01mor\u001b[39;00m is_default_vector_col\n\u001b[1;32m 2026\u001b[0m ):\n\u001b[1;32m 2027\u001b[0m data \u001b[38;5;241m=\u001b[39m _sanitize_vector_column(\n\u001b[1;32m 2028\u001b[0m data,\n\u001b[1;32m 2029\u001b[0m vector_column_name\u001b[38;5;241m=\u001b[39mfield\u001b[38;5;241m.\u001b[39mname,\n\u001b[1;32m 2030\u001b[0m on_bad_vectors\u001b[38;5;241m=\u001b[39mon_bad_vectors,\n\u001b[1;32m 2031\u001b[0m fill_value\u001b[38;5;241m=\u001b[39mfill_value,\n\u001b[1;32m 2032\u001b[0m )\n\u001b[1;32m 2033\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m pa\u001b[38;5;241m.\u001b[39mTable\u001b[38;5;241m.\u001b[39mfrom_arrays(\n\u001b[0;32m-> 2034\u001b[0m [\u001b[43mdata\u001b[49m\u001b[43m[\u001b[49m\u001b[43mname\u001b[49m\u001b[43m]\u001b[49m \u001b[38;5;28;01mfor\u001b[39;00m name \u001b[38;5;129;01min\u001b[39;00m schema\u001b[38;5;241m.\u001b[39mnames], schema\u001b[38;5;241m=\u001b[39mschema\n\u001b[1;32m 2035\u001b[0m )\n\u001b[1;32m 2037\u001b[0m \u001b[38;5;66;03m# just check the vector column\u001b[39;00m\n\u001b[1;32m 2038\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m VECTOR_COLUMN_NAME \u001b[38;5;129;01min\u001b[39;00m data\u001b[38;5;241m.\u001b[39mcolumn_names:\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1693\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular.__getitem__\u001b[0;34m()\u001b[0m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1779\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular.column\u001b[0;34m()\u001b[0m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1715\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular._ensure_integer_index\u001b[0;34m()\u001b[0m\n", - "\u001b[0;31mKeyError\u001b[0m: 'Field \"node_ids\" does not exist in schema'" - ] - } - ], - "source": [ - "# Generate combinations\n", - "generator = generate_combinations(table_bioprocesses, table_genes, table_metapaths)\n", - "\n", - "count = 1\n", - "# Process and print chunks\n", - "for chunk_table in process_in_chunks(generator, chunk_size=5000000):\n", - " # add the chunk to the table\n", - " print(f\"Adding chunk {count}\")\n", - " table.add(chunk_table)\n", - " count += 1\n", - " break" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "828431ff-398c-4c23-9fa7-f65a3925597e", - "metadata": {}, - "outputs": [], - "source": [ - "# After inserting all chunks, show the shape of the table\n", - "num_rows = table.count()\n", - "num_columns = len(table.schema().names)\n", - "\n", - "print(f\"Table shape: ({num_rows}, {num_columns})\")" - ] } ], "metadata": { diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.py b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.py index 4e27b68..e55802e 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.py +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_all_data.py @@ -27,15 +27,13 @@ # + import pathlib -from itertools import product -from typing import Generator, Iterator, Tuple -import lancedb import pandas as pd import pyarrow as pa from pyarrow import csv from hetionet_utils.database import HetionetNeo4j + # - # gather metapaths which are not in the metapaths_ignore.csv @@ -62,6 +60,7 @@ ) # - +# build a sample result from HetionetNeo4j hetiocli = HetionetNeo4j() sample_result = hetiocli.get_metapath_data( source_id=str(table_bioprocesses[0][0]), @@ -83,47 +82,12 @@ ) / # kilobytes - 1024 / + 1024 + / # megabytes - 1024 / + 1024 + / # gigabytes 1024, "GB", ) - -# + -# create results folder -pathlib.Path("data/results").mkdir(exist_ok=True) - -# Initialize your LanceDB database and table -db = lancedb.connect("data/results/bioprocess_and_gene_metapaths") -table_name = "bioprocess_gene_metapath_scores" - -# create table, overwriting previous results -db.create_table( - table_name, - schema=pa.Table.from_pandas(sample_result).schema, - mode="overwrite", -) - -table = db.open_table(table_name) - -# + -# Generate combinations -generator = generate_combinations(table_bioprocesses, table_genes, table_metapaths) - -count = 1 -# Process and print chunks -for chunk_table in process_in_chunks(generator, chunk_size=5000000): - # add the chunk to the table - print(f"Adding chunk {count}") - table.add(chunk_table) - count += 1 - break - -# + -# After inserting all chunks, show the shape of the table -num_rows = table.count() -num_columns = len(table.schema().names) - -print(f"Table shape: ({num_rows}, {num_columns})") diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.ipynb b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.ipynb index 8fc9c8f..82d42f4 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.ipynb +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.ipynb @@ -7,7 +7,8 @@ "source": [ "# Biological Process and Gene Metapath Data Gathering - Subset - Metapath BPpGdAdG\n", "\n", - "This notebook focuses on gathering **a subset** of data related to the following requirements and **focusing on metapath BPpGdAdG**:\n", + "This notebook focuses on gathering **a subset** of data related\n", + "to the following requirements and **focusing on metapath BPpGdAdG**:\n", "\n", "- Each value from `BP.csv` is a source and each value\n", "from `Gene.csv` is a target.\n", @@ -21,105 +22,30 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": 1, "id": "cb23bdc3-241a-47e0-8016-0533730762b6", "metadata": {}, "outputs": [], "source": [ "import pathlib\n", - "from itertools import product\n", - "from typing import Generator, Iterator, Tuple\n", + "from functools import partial\n", "\n", "import lancedb\n", "import pandas as pd\n", "import pyarrow as pa\n", + "from joblib import Parallel, delayed\n", "from pyarrow import csv\n", "\n", + "from hetionet_utils.combination import (\n", + " generate_combinations_for_bioprocs_genes_and_metapaths,\n", + " process_in_chunks_for_bioprocs_genes_and_metapaths,\n", + ")\n", "from hetionet_utils.database import HetionetNeo4j" ] }, { "cell_type": "code", - "execution_count": 3, - "id": "33492577-2f44-404f-b866-f76a54de28ba", - "metadata": {}, - "outputs": [], - "source": [ - "def generate_combinations(\n", - " table_bioprocesses: pa.Table, table_genes: pa.Table, table_metapaths: pa.Table\n", - ") -> Generator[Tuple[str, str, str], None, None]:\n", - " \"\"\"\n", - " Generates all possible combinations of IDs from three Arrow tables.\n", - "\n", - " Args:\n", - " table_bioprocesses (pa.Table):\n", - " Arrow Table containing bioprocess IDs in an 'id' column.\n", - " table_genes (pa.Table):\n", - " Arrow Table containing gene IDs in an 'id' column.\n", - " table_metapaths (pa.Table):\n", - " Arrow Table containing metapath values in a 'metapath' column.\n", - "\n", - " Yields:\n", - " Tuple[str, str, str]:\n", - " A tuple with a bioprocess ID, a gene ID, and a metapath value.\n", - " \"\"\"\n", - " for combo in product(\n", - " table_bioprocesses[\"id\"].to_pylist(),\n", - " table_genes[\"id\"].to_pylist(),\n", - " table_metapaths[\"metapath\"].to_pylist(),\n", - " ):\n", - " yield combo\n", - "\n", - "\n", - "def process_in_chunks(\n", - " generator: Iterator[Tuple[str, str, str]], chunk_size: int = 1000\n", - ") -> Iterator[pa.Table]:\n", - " \"\"\"\n", - " Processes combinations from a generator in smaller chunks\n", - " as Arrow Tables.\n", - "\n", - " Args:\n", - " generator (Iterator[Tuple[str, str, str]]):\n", - " A generator that yields tuples of combinations.\n", - " chunk_size (int, optional):\n", - " The number of rows per chunk. Defaults to 1000.\n", - "\n", - " Yields:\n", - " pa.Table:\n", - " An Arrow Table containing a chunk of combinations\n", - " with columns ['source_id', 'target_id', 'metapath'].\n", - " \"\"\"\n", - " chunk = []\n", - " for i, combo in enumerate(generator):\n", - " # Convert each combination to a tuple of strings to avoid None values\n", - " combo_tuple = tuple(str(x) if x is not None else \"\" for x in combo)\n", - " chunk.append(combo_tuple)\n", - "\n", - " if (i + 1) % chunk_size == 0:\n", - " # Create Arrow Table from the chunk\n", - " yield pa.table(\n", - " {\n", - " \"source_id\": [row[0] for row in chunk],\n", - " \"target_id\": [row[1] for row in chunk],\n", - " \"metapath\": [row[2] for row in chunk],\n", - " }\n", - " )\n", - " chunk = []\n", - "\n", - " # Yield any remaining combinations as an Arrow Table\n", - " if chunk:\n", - " yield pa.table(\n", - " {\n", - " \"source_id\": [row[0] for row in chunk],\n", - " \"target_id\": [row[1] for row in chunk],\n", - " \"metapath\": [row[2] for row in chunk],\n", - " }\n", - " )" - ] - }, - { - "cell_type": "code", - "execution_count": 4, + "execution_count": 2, "id": "22142383-8ae8-4c3a-b5ac-17c9f2dfc409", "metadata": {}, "outputs": [ @@ -152,36 +78,16 @@ " 5\n", " BPpGdAdG\n", " \n", - " \n", - " 6\n", - " BPpGdAeG\n", - " \n", - " \n", - " 7\n", - " BPpGdAuG\n", - " \n", - " \n", - " 8\n", - " BPpGeAdG\n", - " \n", - " \n", - " 9\n", - " BPpGeAeG\n", - " \n", " \n", "\n", "" ], "text/plain": [ " metapath\n", - "5 BPpGdAdG\n", - "6 BPpGdAeG\n", - "7 BPpGdAuG\n", - "8 BPpGeAdG\n", - "9 BPpGeAeG" + "5 BPpGdAdG" ] }, - "execution_count": 4, + "execution_count": 2, "metadata": {}, "output_type": "execute_result" } @@ -193,12 +99,14 @@ "df_metapaths = df_metapaths[\n", " ~df_metapaths[\"metapath\"].isin(df_metapaths_ignore[\"metapath\"])\n", "]\n", + "# filter to a single metapath (instead of all)\n", + "df_metapaths = df_metapaths[df_metapaths[\"metapath\"] == \"BPpGdAdG\"]\n", "df_metapaths.head()" ] }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 3, "id": "1b75acd4-2bb3-4adf-a851-d758e75b22b6", "metadata": {}, "outputs": [ @@ -206,7 +114,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "Expected number of queries: 11203627115\n" + "Expected number of queries: 238375045\n" ] } ], @@ -228,7 +136,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 4, "id": "258960f1-1ea7-4365-b948-af69c6425d37", "metadata": {}, "outputs": [ @@ -253,147 +161,95 @@ " \n", " \n", " \n", - " metapath\n", - " node_ids\n", - " rel_ids\n", + " source_id\n", + " target_id\n", " PDP\n", - " percent_of_DWPC\n", - " score\n", - " PC\n", " DWPC\n", " \n", " \n", " \n", " \n", " 0\n", - " BPpGdAdG\n", - " [40731, 21753, 36969, 16764]\n", - " [1390556, 865578, 2128874]\n", + " GO:0000002\n", + " 1\n", " 0.000004\n", - " 16.997932\n", - " -0.0\n", - " NaN\n", " NaN\n", " \n", " \n", " 1\n", - " BPpGdAdG\n", - " [40731, 32551, 36969, 16764]\n", - " [1196717, 11354, 2128874]\n", + " GO:0000002\n", + " 1\n", " 0.000004\n", - " 16.778595\n", - " -0.0\n", - " 12.0\n", " 0.000025\n", " \n", " \n", " 2\n", - " BPpGdAdG\n", - " [40731, 39858, 36969, 16764]\n", - " [1220136, 2096090, 2128874]\n", + " GO:0000002\n", + " 1\n", " 0.000002\n", - " 9.334748\n", - " -0.0\n", - " 12.0\n", " 0.000025\n", " \n", " \n", " 3\n", - " BPpGdAdG\n", - " [40731, 8043, 36969, 16764]\n", - " [1153859, 1995416, 2128874]\n", + " GO:0000002\n", + " 1\n", " 0.000002\n", - " 8.169678\n", - " -0.0\n", - " 12.0\n", " 0.000025\n", " \n", " \n", " 4\n", - " BPpGdAdG\n", - " [40731, 30743, 11763, 16764]\n", - " [1837396, 1950404, 1188329]\n", + " GO:0000002\n", + " 1\n", " 0.000002\n", - " 7.757325\n", - " -0.0\n", - " 12.0\n", " 0.000025\n", " \n", " \n", " 5\n", - " BPpGdAdG\n", - " [40731, 10526, 36969, 16764]\n", - " [132194, 85560, 2128874]\n", + " GO:0000002\n", + " 1\n", " 0.000002\n", - " 7.532643\n", - " -0.0\n", - " 12.0\n", " 0.000025\n", " \n", " \n", " 6\n", - " BPpGdAdG\n", - " [40731, 45057, 36969, 16764]\n", - " [1985929, 450350, 2128874]\n", + " GO:0000002\n", + " 1\n", " 0.000002\n", - " 6.985486\n", - " -0.0\n", - " 12.0\n", " 0.000025\n", " \n", " \n", " 7\n", - " BPpGdAdG\n", - " [40731, 12891, 11763, 16764]\n", - " [1079500, 2053410, 1188329]\n", + " GO:0000002\n", + " 1\n", " 0.000002\n", - " 6.545380\n", - " -0.0\n", - " 12.0\n", " 0.000025\n", " \n", " \n", " 8\n", - " BPpGdAdG\n", - " [40731, 20458, 36969, 16764]\n", - " [18158, 962402, 2128874]\n", + " GO:0000002\n", + " 1\n", " 0.000001\n", - " 6.009676\n", - " -0.0\n", - " 12.0\n", " 0.000025\n", " \n", " \n", " 9\n", - " BPpGdAdG\n", - " [40731, 9350, 36969, 16764]\n", - " [2091178, 285298, 2128874]\n", + " GO:0000002\n", + " 1\n", " 0.000001\n", - " 4.833247\n", - " -0.0\n", - " 12.0\n", " 0.000025\n", " \n", " \n", " 10\n", - " BPpGdAdG\n", - " [40731, 9740, 36969, 16764]\n", - " [2030417, 658582, 2128874]\n", + " GO:0000002\n", + " 1\n", " 0.000001\n", - " 4.619502\n", - " -0.0\n", - " 12.0\n", " 0.000025\n", " \n", " \n", " 11\n", - " BPpGdAdG\n", - " [40731, 22854, 36969, 16764]\n", - " [1414951, 1871571, 2128874]\n", + " GO:0000002\n", + " 1\n", " 0.000001\n", - " 4.435788\n", - " -0.0\n", - " 12.0\n", " 0.000025\n", " \n", " \n", @@ -401,61 +257,49 @@ "" ], "text/plain": [ - " metapath node_ids rel_ids \\\n", - "0 BPpGdAdG [40731, 21753, 36969, 16764] [1390556, 865578, 2128874] \n", - "1 BPpGdAdG [40731, 32551, 36969, 16764] [1196717, 11354, 2128874] \n", - "2 BPpGdAdG [40731, 39858, 36969, 16764] [1220136, 2096090, 2128874] \n", - "3 BPpGdAdG [40731, 8043, 36969, 16764] [1153859, 1995416, 2128874] \n", - "4 BPpGdAdG [40731, 30743, 11763, 16764] [1837396, 1950404, 1188329] \n", - "5 BPpGdAdG [40731, 10526, 36969, 16764] [132194, 85560, 2128874] \n", - "6 BPpGdAdG [40731, 45057, 36969, 16764] [1985929, 450350, 2128874] \n", - "7 BPpGdAdG [40731, 12891, 11763, 16764] [1079500, 2053410, 1188329] \n", - "8 BPpGdAdG [40731, 20458, 36969, 16764] [18158, 962402, 2128874] \n", - "9 BPpGdAdG [40731, 9350, 36969, 16764] [2091178, 285298, 2128874] \n", - "10 BPpGdAdG [40731, 9740, 36969, 16764] [2030417, 658582, 2128874] \n", - "11 BPpGdAdG [40731, 22854, 36969, 16764] [1414951, 1871571, 2128874] \n", - "\n", - " PDP percent_of_DWPC score PC DWPC \n", - "0 0.000004 16.997932 -0.0 NaN NaN \n", - "1 0.000004 16.778595 -0.0 12.0 0.000025 \n", - "2 0.000002 9.334748 -0.0 12.0 0.000025 \n", - "3 0.000002 8.169678 -0.0 12.0 0.000025 \n", - "4 0.000002 7.757325 -0.0 12.0 0.000025 \n", - "5 0.000002 7.532643 -0.0 12.0 0.000025 \n", - "6 0.000002 6.985486 -0.0 12.0 0.000025 \n", - "7 0.000002 6.545380 -0.0 12.0 0.000025 \n", - "8 0.000001 6.009676 -0.0 12.0 0.000025 \n", - "9 0.000001 4.833247 -0.0 12.0 0.000025 \n", - "10 0.000001 4.619502 -0.0 12.0 0.000025 \n", - "11 0.000001 4.435788 -0.0 12.0 0.000025 " + " source_id target_id PDP DWPC\n", + "0 GO:0000002 1 0.000004 NaN\n", + "1 GO:0000002 1 0.000004 0.000025\n", + "2 GO:0000002 1 0.000002 0.000025\n", + "3 GO:0000002 1 0.000002 0.000025\n", + "4 GO:0000002 1 0.000002 0.000025\n", + "5 GO:0000002 1 0.000002 0.000025\n", + "6 GO:0000002 1 0.000002 0.000025\n", + "7 GO:0000002 1 0.000002 0.000025\n", + "8 GO:0000002 1 0.000001 0.000025\n", + "9 GO:0000002 1 0.000001 0.000025\n", + "10 GO:0000002 1 0.000001 0.000025\n", + "11 GO:0000002 1 0.000001 0.000025" ] }, - "execution_count": 6, + "execution_count": 4, "metadata": {}, "output_type": "execute_result" } ], "source": [ + "# build a sample result from HetionetNeo4j\n", "hetiocli = HetionetNeo4j()\n", "sample_result = hetiocli.get_metapath_data(\n", " source_id=str(table_bioprocesses[0][0]),\n", " target_id=int(str(table_genes[0][0])),\n", " metapath=str(table_metapaths[0][0]),\n", + " columns=[\"source_id\", \"target_id\", \"PDP\", \"DWPC\"],\n", ")\n", "sample_result" ] }, { "cell_type": "code", - "execution_count": 15, - "id": "4701c45d-183c-423a-ac69-0322d13e9751", + "execution_count": 5, + "id": "8661d1f3-03e9-42b6-b14b-d09b48e8a4ec", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "Expected storage: 63617.26161106955 GB\n" + "Expected storage: 734.8334406968206 GB\n" ] } ], @@ -464,22 +308,23 @@ "sample_result.to_parquet((filepath := \"example_output.parquet\"))\n", "print(\n", " \"Expected storage: \",\n", - " (\n", - " # bytes\n", + " ( # bytes\n", " pathlib.Path(filepath).stat().st_size\n", - " *\n", - " # multiplied by the number of expected queries we need to make\n", - " expected_queries\n", + " /\n", + " # kilobytes\n", + " 1024\n", + " /\n", + " # megabytes\n", + " 1024\n", + " /\n", + " # gigabytes\n", + " 1024\n", " )\n", - " /\n", - " # kilobytes\n", - " 1024 /\n", - " # megabytes\n", - " 1024 /\n", - " # gigabytes\n", - " 1024,\n", + " * expected_queries,\n", " \"GB\",\n", - ")" + ")\n", + "# remove the example file\n", + "pathlib.Path(filepath).unlink()" ] }, { @@ -516,51 +361,68 @@ "name": "stdout", "output_type": "stream", "text": [ - "Adding chunk 1\n" - ] - }, - { - "ename": "KeyError", - "evalue": "'Field \"node_ids\" does not exist in schema'", - "output_type": "error", - "traceback": [ - "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", - "\u001b[0;31mKeyError\u001b[0m Traceback (most recent call last)", - "Cell \u001b[0;32mIn[7], line 9\u001b[0m\n\u001b[1;32m 6\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m chunk_table \u001b[38;5;129;01min\u001b[39;00m process_in_chunks(generator, chunk_size\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m5000000\u001b[39m):\n\u001b[1;32m 7\u001b[0m \u001b[38;5;66;03m# add the chunk to the table\u001b[39;00m\n\u001b[1;32m 8\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mAdding chunk \u001b[39m\u001b[38;5;132;01m{\u001b[39;00mcount\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m\"\u001b[39m)\n\u001b[0;32m----> 9\u001b[0m \u001b[43mtable\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43madd\u001b[49m\u001b[43m(\u001b[49m\u001b[43mchunk_table\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 10\u001b[0m count \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;241m1\u001b[39m\n\u001b[1;32m 11\u001b[0m \u001b[38;5;28;01mbreak\u001b[39;00m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:1509\u001b[0m, in \u001b[0;36mLanceTable.add\u001b[0;34m(self, data, mode, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 1485\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m\"\"\"Add data to the table.\u001b[39;00m\n\u001b[1;32m 1486\u001b[0m \u001b[38;5;124;03mIf vector columns are missing and the table\u001b[39;00m\n\u001b[1;32m 1487\u001b[0m \u001b[38;5;124;03mhas embedding functions, then the vector columns\u001b[39;00m\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 1506\u001b[0m \u001b[38;5;124;03m The number of vectors in the table.\u001b[39;00m\n\u001b[1;32m 1507\u001b[0m \u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m 1508\u001b[0m \u001b[38;5;66;03m# TODO: manage table listing and metadata separately\u001b[39;00m\n\u001b[0;32m-> 1509\u001b[0m data, _ \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_data\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 1510\u001b[0m \u001b[43m \u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1511\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1512\u001b[0m \u001b[43m \u001b[49m\u001b[43mmetadata\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mschema\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmetadata\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1513\u001b[0m \u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1514\u001b[0m \u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mfill_value\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1515\u001b[0m \u001b[43m\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 1516\u001b[0m \u001b[38;5;66;03m# Access the dataset_mut property to ensure that the dataset is mutable.\u001b[39;00m\n\u001b[1;32m 1517\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_ref\u001b[38;5;241m.\u001b[39mdataset_mut\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:154\u001b[0m, in \u001b[0;36m_sanitize_data\u001b[0;34m(data, schema, metadata, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 151\u001b[0m data \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mreplace_schema_metadata(metadata)\n\u001b[1;32m 153\u001b[0m \u001b[38;5;66;03m# TODO improve the logics in _sanitize_schema\u001b[39;00m\n\u001b[0;32m--> 154\u001b[0m data \u001b[38;5;241m=\u001b[39m \u001b[43m_sanitize_schema\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdata\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mschema\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mon_bad_vectors\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mfill_value\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 155\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m schema \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[1;32m 156\u001b[0m schema \u001b[38;5;241m=\u001b[39m data\u001b[38;5;241m.\u001b[39mschema\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/lancedb/table.py:2034\u001b[0m, in \u001b[0;36m_sanitize_schema\u001b[0;34m(data, schema, on_bad_vectors, fill_value)\u001b[0m\n\u001b[1;32m 2024\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m field\u001b[38;5;241m.\u001b[39mname \u001b[38;5;129;01min\u001b[39;00m data\u001b[38;5;241m.\u001b[39mcolumn_names \u001b[38;5;129;01mand\u001b[39;00m (\n\u001b[1;32m 2025\u001b[0m likely_vector_col \u001b[38;5;129;01mor\u001b[39;00m is_default_vector_col\n\u001b[1;32m 2026\u001b[0m ):\n\u001b[1;32m 2027\u001b[0m data \u001b[38;5;241m=\u001b[39m _sanitize_vector_column(\n\u001b[1;32m 2028\u001b[0m data,\n\u001b[1;32m 2029\u001b[0m vector_column_name\u001b[38;5;241m=\u001b[39mfield\u001b[38;5;241m.\u001b[39mname,\n\u001b[1;32m 2030\u001b[0m on_bad_vectors\u001b[38;5;241m=\u001b[39mon_bad_vectors,\n\u001b[1;32m 2031\u001b[0m fill_value\u001b[38;5;241m=\u001b[39mfill_value,\n\u001b[1;32m 2032\u001b[0m )\n\u001b[1;32m 2033\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m pa\u001b[38;5;241m.\u001b[39mTable\u001b[38;5;241m.\u001b[39mfrom_arrays(\n\u001b[0;32m-> 2034\u001b[0m [\u001b[43mdata\u001b[49m\u001b[43m[\u001b[49m\u001b[43mname\u001b[49m\u001b[43m]\u001b[49m \u001b[38;5;28;01mfor\u001b[39;00m name \u001b[38;5;129;01min\u001b[39;00m schema\u001b[38;5;241m.\u001b[39mnames], schema\u001b[38;5;241m=\u001b[39mschema\n\u001b[1;32m 2035\u001b[0m )\n\u001b[1;32m 2037\u001b[0m \u001b[38;5;66;03m# just check the vector column\u001b[39;00m\n\u001b[1;32m 2038\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m VECTOR_COLUMN_NAME \u001b[38;5;129;01min\u001b[39;00m data\u001b[38;5;241m.\u001b[39mcolumn_names:\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1693\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular.__getitem__\u001b[0;34m()\u001b[0m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1779\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular.column\u001b[0;34m()\u001b[0m\n", - "File \u001b[0;32m~/Documents/work/hetionet-analysis/.venv/lib/python3.12/site-packages/pyarrow/table.pxi:1715\u001b[0m, in \u001b[0;36mpyarrow.lib._Tabular._ensure_integer_index\u001b[0;34m()\u001b[0m\n", - "\u001b[0;31mKeyError\u001b[0m: 'Field \"node_ids\" does not exist in schema'" + "Processing chunk 1\n" ] } ], "source": [ "# Generate combinations\n", - "generator = generate_combinations(table_bioprocesses, table_genes, table_metapaths)\n", + "generator = generate_combinations_for_bioprocs_genes_and_metapaths(\n", + " table_bioprocesses, table_genes, table_metapaths\n", + ")\n", + "# set a class method reference for use with the requests\n", + "get_metapath_data_with_pdp_and_dwpc = partial(\n", + " hetiocli.get_metapath_data, columns=[\"source_id\", \"target_id\", \"PDP\", \"DWPC\"]\n", + ")\n", "\n", + "# create a counter for gathering data and running iterations\n", "count = 1\n", + "\n", "# Process and print chunks\n", - "for chunk_table in process_in_chunks(generator, chunk_size=5000000):\n", + "for chunk_table in process_in_chunks_for_bioprocs_genes_and_metapaths(\n", + " generator, chunk_size=3\n", + "):\n", " # add the chunk to the table\n", - " print(f\"Adding chunk {count}\")\n", - " table.add(chunk_table)\n", + " print(f\"Processing chunk {count}\")\n", + "\n", + " # process threaded results\n", + " results = Parallel(n_jobs=3, backend=\"threading\")(\n", + " delayed(get_metapath_data_with_pdp_and_dwpc)(source_id, target_id, metapath)\n", + " for source_id, target_id, metapath in zip(\n", + " chunk_table[\"source_id\"].to_pylist(),\n", + " chunk_table[\"target_id\"].to_pylist(),\n", + " chunk_table[\"metapath\"].to_pylist(),\n", + " )\n", + " )\n", + "\n", + " # add a concatted dataframe of the results to the lancedb table\n", + " table.add(pd.concat(results))\n", + "\n", + " # increment the counter\n", " count += 1\n", + "\n", + " # temporary break for feedback / testing\n", " break" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 8, "id": "828431ff-398c-4c23-9fa7-f65a3925597e", "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Table shape: (92, 4)\n" + ] + } + ], "source": [ "# After inserting all chunks, show the shape of the table\n", - "num_rows = table.count()\n", - "num_columns = len(table.schema().names)\n", + "num_rows = table.count_rows()\n", + "num_columns = len(table.schema.names)\n", "\n", "print(f\"Table shape: ({num_rows}, {num_columns})\")" ] diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.py b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.py index a629ef7..7af2509 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.py +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.py @@ -14,7 +14,8 @@ # # Biological Process and Gene Metapath Data Gathering - Subset - Metapath BPpGdAdG # -# This notebook focuses on gathering **a subset** of data related to the following requirements and **focusing on metapath BPpGdAdG**: +# This notebook focuses on gathering **a subset** of data related +# to the following requirements and **focusing on metapath BPpGdAdG**: # # - Each value from `BP.csv` is a source and each value # from `Gene.csv` is a target. @@ -27,90 +28,20 @@ # + import pathlib -from itertools import product -from typing import Generator, Iterator, Tuple +from functools import partial import lancedb import pandas as pd import pyarrow as pa +from joblib import Parallel, delayed from pyarrow import csv +from hetionet_utils.combination import ( + generate_combinations_for_bioprocs_genes_and_metapaths, + process_in_chunks_for_bioprocs_genes_and_metapaths, +) from hetionet_utils.database import HetionetNeo4j - -# + -def generate_combinations( - table_bioprocesses: pa.Table, table_genes: pa.Table, table_metapaths: pa.Table -) -> Generator[Tuple[str, str, str], None, None]: - """ - Generates all possible combinations of IDs from three Arrow tables. - - Args: - table_bioprocesses (pa.Table): - Arrow Table containing bioprocess IDs in an 'id' column. - table_genes (pa.Table): - Arrow Table containing gene IDs in an 'id' column. - table_metapaths (pa.Table): - Arrow Table containing metapath values in a 'metapath' column. - - Yields: - Tuple[str, str, str]: - A tuple with a bioprocess ID, a gene ID, and a metapath value. - """ - for combo in product( - table_bioprocesses["id"].to_pylist(), - table_genes["id"].to_pylist(), - table_metapaths["metapath"].to_pylist(), - ): - yield combo - - -def process_in_chunks( - generator: Iterator[Tuple[str, str, str]], chunk_size: int = 1000 -) -> Iterator[pa.Table]: - """ - Processes combinations from a generator in smaller chunks - as Arrow Tables. - - Args: - generator (Iterator[Tuple[str, str, str]]): - A generator that yields tuples of combinations. - chunk_size (int, optional): - The number of rows per chunk. Defaults to 1000. - - Yields: - pa.Table: - An Arrow Table containing a chunk of combinations - with columns ['source_id', 'target_id', 'metapath']. - """ - chunk = [] - for i, combo in enumerate(generator): - # Convert each combination to a tuple of strings to avoid None values - combo_tuple = tuple(str(x) if x is not None else "" for x in combo) - chunk.append(combo_tuple) - - if (i + 1) % chunk_size == 0: - # Create Arrow Table from the chunk - yield pa.table( - { - "source_id": [row[0] for row in chunk], - "target_id": [row[1] for row in chunk], - "metapath": [row[2] for row in chunk], - } - ) - chunk = [] - - # Yield any remaining combinations as an Arrow Table - if chunk: - yield pa.table( - { - "source_id": [row[0] for row in chunk], - "target_id": [row[1] for row in chunk], - "metapath": [row[2] for row in chunk], - } - ) - - # - # gather metapaths which are not in the metapaths_ignore.csv @@ -119,6 +50,8 @@ def process_in_chunks( df_metapaths = df_metapaths[ ~df_metapaths["metapath"].isin(df_metapaths_ignore["metapath"]) ] +# filter to a single metapath (instead of all) +df_metapaths = df_metapaths[df_metapaths["metapath"] == "BPpGdAdG"] df_metapaths.head() # + @@ -137,11 +70,13 @@ def process_in_chunks( ) # - +# build a sample result from HetionetNeo4j hetiocli = HetionetNeo4j() sample_result = hetiocli.get_metapath_data( source_id=str(table_bioprocesses[0][0]), target_id=int(str(table_genes[0][0])), metapath=str(table_metapaths[0][0]), + columns=["source_id", "target_id", "PDP", "DWPC"], ) sample_result @@ -149,22 +84,23 @@ def process_in_chunks( sample_result.to_parquet((filepath := "example_output.parquet")) print( "Expected storage: ", - ( - # bytes + ( # bytes pathlib.Path(filepath).stat().st_size - * - # multiplied by the number of expected queries we need to make - expected_queries + / + # kilobytes + 1024 + / + # megabytes + 1024 + / + # gigabytes + 1024 ) - / - # kilobytes - 1024 / - # megabytes - 1024 / - # gigabytes - 1024, + * expected_queries, "GB", ) +# remove the example file +pathlib.Path(filepath).unlink() # + # create results folder @@ -185,20 +121,46 @@ def process_in_chunks( # + # Generate combinations -generator = generate_combinations(table_bioprocesses, table_genes, table_metapaths) +generator = generate_combinations_for_bioprocs_genes_and_metapaths( + table_bioprocesses, table_genes, table_metapaths +) +# set a class method reference for use with the requests +get_metapath_data_with_pdp_and_dwpc = partial( + hetiocli.get_metapath_data, columns=["source_id", "target_id", "PDP", "DWPC"] +) +# create a counter for gathering data and running iterations count = 1 + # Process and print chunks -for chunk_table in process_in_chunks(generator, chunk_size=5000000): +for chunk_table in process_in_chunks_for_bioprocs_genes_and_metapaths( + generator, chunk_size=3 +): # add the chunk to the table - print(f"Adding chunk {count}") - table.add(chunk_table) + print(f"Processing chunk {count}") + + # process threaded results + results = Parallel(n_jobs=3, backend="threading")( + delayed(get_metapath_data_with_pdp_and_dwpc)(source_id, target_id, metapath) + for source_id, target_id, metapath in zip( + chunk_table["source_id"].to_pylist(), + chunk_table["target_id"].to_pylist(), + chunk_table["metapath"].to_pylist(), + ) + ) + + # add a concatted dataframe of the results to the lancedb table + table.add(pd.concat(results)) + + # increment the counter count += 1 + + # temporary break for feedback / testing break # + # After inserting all chunks, show the shape of the table -num_rows = table.count() -num_columns = len(table.schema().names) +num_rows = table.count_rows() +num_columns = len(table.schema.names) print(f"Table shape: ({num_rows}, {num_columns})") diff --git a/src/hetionet_utils/combination.py b/src/hetionet_utils/combination.py index 63616ae..ebfb8f6 100644 --- a/src/hetionet_utils/combination.py +++ b/src/hetionet_utils/combination.py @@ -5,9 +5,9 @@ from itertools import product from typing import Generator, Iterator, Tuple - import pyarrow as pa + def generate_combinations_for_bioprocs_genes_and_metapaths( table_bioprocesses: pa.Table, table_genes: pa.Table, table_metapaths: pa.Table ) -> Generator[Tuple[str, str, str], None, None]: @@ -54,9 +54,7 @@ def process_in_chunks_for_bioprocs_genes_and_metapaths( """ chunk = [] for i, combo in enumerate(generator): - # Convert each combination to a tuple of strings to avoid None values - combo_tuple = tuple(str(x) if x is not None else "" for x in combo) - chunk.append(combo_tuple) + chunk.append(combo) if (i + 1) % chunk_size == 0: # Create Arrow Table from the chunk @@ -78,70 +76,3 @@ def process_in_chunks_for_bioprocs_genes_and_metapaths( "metapath": [row[2] for row in chunk], } ) - - -@pytest.mark.parametrize( - "data, chunk_size, expected_num_chunks, expected_chunk_sizes", - [ - # Test case 1: Data exactly matches one chunk - ( - [("bio1", "gene1", "meta1")] * 5, - 5, - 1, - [5], - ), - - # Test case 2: Data smaller than chunk size - ( - [("bio1", "gene1", "meta1"), ("bio2", "gene2", "meta2")], - 5, - 1, - [2], - ), - - # Test case 3: Data larger than chunk size, even division - ( - [("bio1", "gene1", "meta1")] * 6, - 3, - 2, - [3, 3], - ), - - # Test case 4: Data larger than chunk size, uneven division - ( - [("bio1", "gene1", "meta1")] * 7, - 3, - 3, - [3, 3, 1], - ), - - # Test case 5: Very large chunk size compared to data - ( - [("bio1", "gene1", "meta1"), ("bio2", "gene2", "meta2"), ("bio3", "gene3", "meta3")], - 100, - 1, - [3], - ), - ], -) -def test_process_in_chunks_for_bioprocs_genes_and_metapaths(data, chunk_size, expected_num_chunks, expected_chunk_sizes): - # Create generator for test data - generator = sample_generator(data) - - # Process in chunks and collect the result - result_chunks = list(process_in_chunks_for_bioprocs_genes_and_metapaths(generator, chunk_size=chunk_size)) - - # Check number of chunks generated - assert len(result_chunks) == expected_num_chunks - - # Check sizes of each chunk - for result_chunk, expected_size in zip(result_chunks, expected_chunk_sizes): - assert result_chunk.num_rows == expected_size - - # Check column names and content of the first chunk - if data: - first_chunk = result_chunks[0] - assert first_chunk.column_names == ["source_id", "target_id", "metapath"] - assert first_chunk["source_id"].to_pylist() == [row[0] for row in data[:expected_chunk_sizes[0]]] - assert first_chunk["target_id"].to_pylist() == [row[1] for row in data[:expected_chunk_sizes[0]]] - assert first_chunk["metapath"].to_pylist() == [row[2] for row in data[:expected_chunk_sizes[0]]] diff --git a/src/hetionet_utils/database.py b/src/hetionet_utils/database.py index 0d92766..35ae72e 100644 --- a/src/hetionet_utils/database.py +++ b/src/hetionet_utils/database.py @@ -91,10 +91,33 @@ def get_id_from_identifer(self: Self, identifier: str) -> int: )[0]["neo4j_id"] def get_metapath_data( - self: Self, source_id: str, target_id: str, metapath: str + self: Self, + source_id: str, + target_id: str, + metapath: str, + columns: Optional[List[str]] = None, ) -> pd.DataFrame: """ - Gathers metapath data from Hetionet via REST API. + Retrieves metapath data between a source and target node from the + Hetionet database via a REST API. + + Args: + source_id (str): + The identifier for the source node. + target_id (str): + The identifier for the target node. + metapath (str): + The metapath pattern to query, representing a specific path + through the network. + columns (Optional[List[str]], optional): + A list of specific columns to include in the result DataFrame. + If None, all columns are included. Defaults to None. + + Returns: + pd.DataFrame: + A DataFrame containing paths between the source and + target based on the specified metapath. The DataFrame includes a + 'source_id' and 'target_id' column with the identifiers for context. """ url = ( @@ -103,4 +126,10 @@ def get_metapath_data( ) # gather response paths as dataframe - return pd.DataFrame(requests.get(url).json()["paths"]) + df_result = pd.DataFrame(requests.get(url).json()["paths"]) + + # add the source and target ids + df_result["source_id"] = source_id + df_result["target_id"] = target_id + + return df_result if columns is None else df_result[columns] diff --git a/tests/test_combinations.py b/tests/test_combinations.py index a5b0305..47851c6 100644 --- a/tests/test_combinations.py +++ b/tests/test_combinations.py @@ -2,10 +2,15 @@ Tests for combination.py """ +from typing import Iterator, List, Tuple + import pyarrow as pa import pytest +from utils import sample_generator + from hetionet_utils.combination import ( generate_combinations_for_bioprocs_genes_and_metapaths, + process_in_chunks_for_bioprocs_genes_and_metapaths, ) @@ -34,7 +39,8 @@ ), # Test case 4: Only one non-empty table (other two are empty) (["bio1"], [], [], []), - # Test case 5: Larger tables with three elements each to check combination generation + # Test case 5: Larger tables with three elements each to + # check combination generation ( ["bio1", "bio2", "bio3"], ["gene1", "gene2", "gene3"], @@ -72,8 +78,14 @@ ], ) def test_generate_combinations_for_bioprocs_genes_and_metapaths( - bioprocesses, genes, metapaths, expected_combinations + bioprocesses: List[str], + genes: List[str], + metapaths: List[str], + expected_combinations: List[Tuple[str, str, str]], ): + """ + Tests for generate_combinations_for_bioprocs_genes_and_metapaths + """ # Create Arrow tables for the test case table_bioprocesses = pa.table({"id": bioprocesses}) table_genes = pa.table({"id": genes}) @@ -98,7 +110,6 @@ def test_generate_combinations_for_bioprocs_genes_and_metapaths( 1, [5], ), - # Test case 2: Data smaller than chunk size ( [("bio1", "gene1", "meta1"), ("bio2", "gene2", "meta2")], @@ -106,7 +117,6 @@ def test_generate_combinations_for_bioprocs_genes_and_metapaths( 1, [2], ), - # Test case 3: Data larger than chunk size, even division ( [("bio1", "gene1", "meta1")] * 6, @@ -114,7 +124,6 @@ def test_generate_combinations_for_bioprocs_genes_and_metapaths( 2, [3, 3], ), - # Test case 4: Data larger than chunk size, uneven division ( [("bio1", "gene1", "meta1")] * 7, @@ -122,34 +131,55 @@ def test_generate_combinations_for_bioprocs_genes_and_metapaths( 3, [3, 3, 1], ), - # Test case 5: Very large chunk size compared to data ( - [("bio1", "gene1", "meta1"), ("bio2", "gene2", "meta2"), ("bio3", "gene3", "meta3")], + [ + ("bio1", "gene1", "meta1"), + ("bio2", "gene2", "meta2"), + ("bio3", "gene3", "meta3"), + ], 100, 1, [3], ), ], ) -def test_process_in_chunks_for_bioprocs_genes_and_metapaths(data, chunk_size, expected_num_chunks, expected_chunk_sizes): +def test_process_in_chunks_for_bioprocs_genes_and_metapaths( + data: Iterator[Tuple[str, str, str]], + chunk_size: int, + expected_num_chunks: int, + expected_chunk_sizes: List[int], +): + """ + Tests for process_in_chunks_for_bioprocs_genes_and_metapaths + """ # Create generator for test data generator = sample_generator(data) - + # Process in chunks and collect the result - result_chunks = list(process_in_chunks_for_bioprocs_genes_and_metapaths(generator, chunk_size=chunk_size)) - + result_chunks = list( + process_in_chunks_for_bioprocs_genes_and_metapaths( + generator, chunk_size=chunk_size + ) + ) + # Check number of chunks generated assert len(result_chunks) == expected_num_chunks - + # Check sizes of each chunk for result_chunk, expected_size in zip(result_chunks, expected_chunk_sizes): assert result_chunk.num_rows == expected_size - + # Check column names and content of the first chunk if data: first_chunk = result_chunks[0] assert first_chunk.column_names == ["source_id", "target_id", "metapath"] - assert first_chunk["source_id"].to_pylist() == [row[0] for row in data[:expected_chunk_sizes[0]]] - assert first_chunk["target_id"].to_pylist() == [row[1] for row in data[:expected_chunk_sizes[0]]] - assert first_chunk["metapath"].to_pylist() == [row[2] for row in data[:expected_chunk_sizes[0]]] + assert first_chunk["source_id"].to_pylist() == [ + row[0] for row in data[: expected_chunk_sizes[0]] + ] + assert first_chunk["target_id"].to_pylist() == [ + row[1] for row in data[: expected_chunk_sizes[0]] + ] + assert first_chunk["metapath"].to_pylist() == [ + row[2] for row in data[: expected_chunk_sizes[0]] + ] diff --git a/tests/test_database.py b/tests/test_database.py index 5df1378..624f0ce 100644 --- a/tests/test_database.py +++ b/tests/test_database.py @@ -29,6 +29,8 @@ def test_get_metapath_data(fixture_HetionetNeo4j: HetionetNeo4j): assert fixture_HetionetNeo4j.get_metapath_data( source_id="UBERON:0001135", target_id="DOID:13223", metapath="AeGiGaD" ).iloc[1].to_dict() == { + "source_id": "UBERON:0001135", + "target_id": "DOID:13223", "metapath": "AeGiGaD", "node_ids": [18472, 34788, 13320, 17256], "rel_ids": [1722767, 1555684, 94499], diff --git a/tests/utils.py b/tests/utils.py new file mode 100644 index 0000000..9a888e4 --- /dev/null +++ b/tests/utils.py @@ -0,0 +1,22 @@ +""" +Utilities for testing +""" + +from typing import Any + + +def sample_generator(data: Any): + """ + Helper function for creating a generator from any iterable data. + + Args: + data (Any): + An iterable data structure (e.g., list, tuple, set) containing + elements to be yielded one by one. + + Yields: + Any: Each element of the input data, yielded in sequence. + """ + for item in data: + yield item + diff --git a/uv.lock b/uv.lock index caf88e2..e1b387c 100644 --- a/uv.lock +++ b/uv.lock @@ -455,13 +455,14 @@ wheels = [ [[package]] name = "hetnet-analysis" -version = "0.1.dev1+g3ae8cea.d20241105" +version = "0.1.dev8+g4a7cf58.d20241108" source = { editable = "." } dependencies = [ { name = "black" }, { name = "hetmatpy" }, { name = "ipywidgets" }, { name = "isort" }, + { name = "joblib" }, { name = "jupyterlab" }, { name = "jupyterlab-code-formatter" }, { name = "jupytext" }, @@ -480,15 +481,16 @@ dev = [ [package.metadata] requires-dist = [ - { name = "black", specifier = ">=24.10.0" }, - { name = "hetmatpy", specifier = ">=0.1.0" }, + { name = "black", specifier = ">=24.10" }, + { name = "hetmatpy", specifier = ">=0.1" }, { name = "ipywidgets", specifier = ">=8.1.5" }, { name = "isort", specifier = ">=5.13.2" }, - { name = "jupyterlab", specifier = ">=4.3.0" }, + { name = "joblib", specifier = ">=1.4.2" }, + { name = "jupyterlab", specifier = ">=4.3" }, { name = "jupyterlab-code-formatter", specifier = ">=3.0.2" }, { name = "jupytext", specifier = ">=1.16.4" }, - { name = "lancedb", specifier = ">=0.15.0" }, - { name = "neo4j", specifier = ">=5.26.0" }, + { name = "lancedb", specifier = ">=0.15" }, + { name = "neo4j", specifier = ">=5.26" }, { name = "requests", specifier = ">=2.32.3" }, ] @@ -674,6 +676,15 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/31/80/3a54838c3fb461f6fec263ebf3a3a41771bd05190238de3486aae8540c36/jinja2-3.1.4-py3-none-any.whl", hash = "sha256:bc5dd2abb727a5319567b7a813e6a2e7318c39f4f487cfe6c89c6f9c7d25197d", size = 133271 }, ] +[[package]] +name = "joblib" +version = "1.4.2" +source = { registry = "https://pypi.org/simple" } +sdist = { url = "https://files.pythonhosted.org/packages/64/33/60135848598c076ce4b231e1b1895170f45fbcaeaa2c9d5e38b04db70c35/joblib-1.4.2.tar.gz", hash = "sha256:2382c5816b2636fbd20a09e0f4e9dad4736765fdfb7dca582943b9c1366b3f0e", size = 2116621 } +wheels = [ + { url = "https://files.pythonhosted.org/packages/91/29/df4b9b42f2be0b623cbd5e2140cafcaa2bef0759a00b7b70104dcfe2fb51/joblib-1.4.2-py3-none-any.whl", hash = "sha256:06d478d5674cbc267e7496a410ee875abd68e4340feff4490bcb7afb88060ae6", size = 301817 }, +] + [[package]] name = "json5" version = "0.9.25" From e4f9887663fc1a0364de4f2472574bfa3285f6f4 Mon Sep 17 00:00:00 2001 From: d33bs Date: Fri, 8 Nov 2024 16:50:25 -0700 Subject: [PATCH 09/11] formatting and docs --- CODE_OF_CONDUCT.md | 132 ++++++++++++++++++ LICENSE | 2 +- README.md | 4 +- pyproject.toml | 6 +- ...ather_subset_data_metapath_BPpGdAdG.ipynb} | 2 + ...> gather_subset_data_metapath_BPpGdAdG.py} | 3 +- tests/utils.py | 9 +- 7 files changed, 147 insertions(+), 11 deletions(-) create mode 100644 CODE_OF_CONDUCT.md rename src/bioprocess_metapath_to_gene_pval_and_dwpc/{gather_subset_data_metapath_ BPpGdAdG.ipynb => gather_subset_data_metapath_BPpGdAdG.ipynb} (99%) rename src/bioprocess_metapath_to_gene_pval_and_dwpc/{gather_subset_data_metapath_ BPpGdAdG.py => gather_subset_data_metapath_BPpGdAdG.py} (98%) diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md new file mode 100644 index 0000000..1be54b1 --- /dev/null +++ b/CODE_OF_CONDUCT.md @@ -0,0 +1,132 @@ +# Contributor Covenant Code of Conduct + +## Our Pledge + +We as members, contributors, and leaders pledge to make participation in our +community a harassment-free 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Temporary Ban + +**Community Impact**: A serious violation of community standards, including +sustained inappropriate behavior. + +**Consequence**: A temporary ban from any sort of interaction or public +communication with the community for a specified period of time. No public or +private interaction with the people involved, including unsolicited interaction +with those enforcing the Code of Conduct, is allowed during this period. +Violating these terms may lead to a permanent ban. + +### 4. Permanent Ban + +**Community Impact**: Demonstrating a pattern of violation of community +standards, including sustained inappropriate behavior, harassment of an +individual, or aggression toward or disparagement of classes of individuals. + +**Consequence**: A permanent ban from any sort of public interaction within the +community. + +## Attribution + +This Code of Conduct is adapted from the [Contributor Covenant][homepage], +version 2.1, available at +[https://www.contributor-covenant.org/version/2/1/code_of_conduct.html][v2.1]. + +Community Impact Guidelines were inspired by +[Mozilla's code of conduct enforcement ladder][mozilla coc]. + +For answers to common questions about this code of conduct, see the FAQ at +[https://www.contributor-covenant.org/faq][faq]. Translations are available at +[https://www.contributor-covenant.org/translations][translations]. + +[faq]: https://www.contributor-covenant.org/faq +[homepage]: https://www.contributor-covenant.org +[mozilla coc]: https://github.com/mozilla/diversity +[translations]: https://www.contributor-covenant.org/translations +[v2.1]: https://www.contributor-covenant.org/version/2/1/code_of_conduct.html diff --git a/LICENSE b/LICENSE index 3c4cde4..356dd54 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ BSD 3-Clause License -Copyright (c) 2024, Dave Bunten +Copyright (c) 2024, CU DBMI Community Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: diff --git a/README.md b/README.md index 07badad..5d29bff 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,10 @@ # Hetionet Analysis -Various data analysis performed using Hetionet, a hetnet of biomedical knowledge. +Various data analysis performed using [Hetionet](https://het.io/), a [hetnet](https://en.wikipedia.org/wiki/Heterogeneous_network) of biomedical knowledge. ## Development 1. [Install `uv`](https://docs.astral.sh/uv/getting-started/installation/). 1. Install package locally (e.g. `uv pip install -e ".[dev]"`). 1. Run tests (e.g. `uv run poe test`, through [poethepoet](https://poethepoet.natn.io/index.html) task). -1. Build dynamically versioned distribution (e.g. `uv build`). +1. Run various tasks (e.g. `uv run poe run_bioproc_gene_metapath_test`) diff --git a/pyproject.toml b/pyproject.toml index f818774..ef29b24 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -79,9 +79,13 @@ dev-dependencies = [ # install the project for development purposes setup.shell = """ uv pip install '.[dev]' -# run testing on development source """ +# run testing on development source test.shell = """ uv run pre-commit run -a uv run pytest """ +# +run_bioproc_gene_metapath_test.shell = """ +uv run python src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.py +""" diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.ipynb b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.ipynb similarity index 99% rename from src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.ipynb rename to src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.ipynb index 82d42f4..1d880a8 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.ipynb +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.ipynb @@ -29,6 +29,8 @@ "source": [ "import pathlib\n", "from functools import partial\n", + "from itertools import product\n", + "from typing import Generator, Iterator, Tuple\n", "\n", "import lancedb\n", "import pandas as pd\n", diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.py b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.py similarity index 98% rename from src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.py rename to src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.py index 7af2509..fe56ce6 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_ BPpGdAdG.py +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.py @@ -29,6 +29,8 @@ # + import pathlib from functools import partial +from itertools import product +from typing import Generator, Iterator, Tuple import lancedb import pandas as pd @@ -41,7 +43,6 @@ process_in_chunks_for_bioprocs_genes_and_metapaths, ) from hetionet_utils.database import HetionetNeo4j - # - # gather metapaths which are not in the metapaths_ignore.csv diff --git a/tests/utils.py b/tests/utils.py index 9a888e4..7fdf9a1 100644 --- a/tests/utils.py +++ b/tests/utils.py @@ -2,16 +2,14 @@ Utilities for testing """ -from typing import Any - -def sample_generator(data: Any): +def sample_generator(data: list[str]): """ Helper function for creating a generator from any iterable data. Args: - data (Any): - An iterable data structure (e.g., list, tuple, set) containing + data (Any): + An iterable data structure (e.g., list, tuple, set) containing elements to be yielded one by one. Yields: @@ -19,4 +17,3 @@ def sample_generator(data: Any): """ for item in data: yield item - From f327fc1461e5f16925ea7c48f950baddc1fc7742 Mon Sep 17 00:00:00 2001 From: d33bs Date: Fri, 8 Nov 2024 16:50:34 -0700 Subject: [PATCH 10/11] formatting --- .../gather_subset_data_metapath_BPpGdAdG.ipynb | 2 -- .../gather_subset_data_metapath_BPpGdAdG.py | 3 +-- 2 files changed, 1 insertion(+), 4 deletions(-) diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.ipynb b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.ipynb index 1d880a8..82d42f4 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.ipynb +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.ipynb @@ -29,8 +29,6 @@ "source": [ "import pathlib\n", "from functools import partial\n", - "from itertools import product\n", - "from typing import Generator, Iterator, Tuple\n", "\n", "import lancedb\n", "import pandas as pd\n", diff --git a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.py b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.py index fe56ce6..7af2509 100644 --- a/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.py +++ b/src/bioprocess_metapath_to_gene_pval_and_dwpc/gather_subset_data_metapath_BPpGdAdG.py @@ -29,8 +29,6 @@ # + import pathlib from functools import partial -from itertools import product -from typing import Generator, Iterator, Tuple import lancedb import pandas as pd @@ -43,6 +41,7 @@ process_in_chunks_for_bioprocs_genes_and_metapaths, ) from hetionet_utils.database import HetionetNeo4j + # - # gather metapaths which are not in the metapaths_ignore.csv From c3bfc02fac78f557755bc79af60a58ac92f7c5ed Mon Sep 17 00:00:00 2001 From: d33bs Date: Fri, 8 Nov 2024 17:01:39 -0700 Subject: [PATCH 11/11] remove poetry from pre-commit workflow --- .github/workflows/run-tests.yml | 5 ----- 1 file changed, 5 deletions(-) diff --git a/.github/workflows/run-tests.yml b/.github/workflows/run-tests.yml index 4ea128b..11af73c 100644 --- a/.github/workflows/run-tests.yml +++ b/.github/workflows/run-tests.yml @@ -19,11 +19,6 @@ jobs: uses: actions/setup-python@v5 with: python-version: "3.11" - - name: Setup for poetry - run: | - python -m pip install poetry - - name: Install environment - run: poetry install --no-interaction --no-ansi - uses: pre-commit/action@v3.0.1 run_tests: strategy: