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Merge branch 'master' into caleb/minor_geometry_optimizations
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CalebBell committed Aug 28, 2024
2 parents 7fdb05c + 36d3b27 commit 1481fe3
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95 changes: 95 additions & 0 deletions .github/workflows/build-multiarch.yaml
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name: Build Multiarch

on:
push:
branches: [release]
pull_request:
branches: [master, release]

jobs:
multi-arch-test:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
include:
- arch: armv6
distro: bookworm
- arch: armv7
distro: bookworm
- arch: aarch64
distro: bookworm
- arch: s390x
distro: bookworm
- arch: ppc64le
distro: bookworm

- arch: armv7
distro: ubuntu_latest
- arch: aarch64
distro: ubuntu_latest
- arch: riscv64
distro: ubuntu_devel
- arch: s390x
distro: ubuntu_latest
- arch: ppc64le
distro: ubuntu_latest

- arch: armv7
distro: ubuntu22.04
- arch: aarch64
distro: ubuntu22.04
# - arch: riscv64
# distro: ubuntu22.04
- arch: s390x
distro: ubuntu22.04
- arch: ppc64le
distro: ubuntu22.04
# ubuntu with riscv64 has three failures and a crash on test_SolverInterface_basics in scipy's root function; also test_is_poly_positive and test_bend_rounded_Miller_Re_correction
# ubuntu20.04 is too old, fluids dropped support with numpy 2.0 compat

- arch: armv6
distro: alpine_latest
- arch: armv7
distro: alpine_latest
- arch: aarch64
distro: alpine_latest
- arch: riscv64
distro: alpine_latest
- arch: s390x
distro: alpine_latest
- arch: ppc64le
distro: alpine_latest
# fedora-latest doesn't work not sure why

steps:
- uses: actions/checkout@v4
- name: Set up QEMU
uses: docker/setup-qemu-action@v2
with:
platforms: all
- name: Run on ${{ matrix.arch }}
uses: uraimo/run-on-arch-action@v2
with:
arch: ${{ matrix.arch }}
distro: ${{ matrix.distro }}
githubToken: ${{ github.token }}
install: |
if [[ "${{ matrix.distro }}" == "alpine_latest" ]]; then
apk update
apk add python3 py3-pip py3-scipy py3-matplotlib py3-numpy py3-pandas
elif [[ "${{ matrix.distro }}" == "ubuntu_latest" || "${{ matrix.distro }}" == "ubuntu_rolling" || "${{ matrix.distro }}" == "ubuntu_devel" || "${{ matrix.distro }}" == "ubuntu20.04" || "${{ matrix.distro }}" == "ubuntu22.04" || "${{ matrix.distro }}" == "bookworm" ]]; then
apt-get update
apt-get install -y libatlas-base-dev liblapack-dev gfortran libgmp-dev libmpfr-dev libsuitesparse-dev ccache libmpc-dev python3 python3-pip python3-scipy python3-matplotlib python3-numpy python3-pandas
fi
run: |
if python3 -c "import subprocess; exit('no such option' not in subprocess.getoutput('pip3 install --break-system-packages'))"; then
# If the exit status is 0 (True), this means the option is not supported
python3 -m pip install wheel
pip3 install -r requirements_test_multiarch.txt
else
# If the exit status is 1 (False), this means the option is supported
python3 -m pip install wheel --break-system-packages
pip3 install -r requirements_test_multiarch.txt --break-system-packages
fi
python3 -m pytest . -v -m "not online and not thermo and not numba"
3 changes: 3 additions & 0 deletions .github/workflows/build.yml
Original file line number Diff line number Diff line change
Expand Up @@ -132,5 +132,8 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: Coveralls Finished
env:
COVERALLS_REPO_TOKEN: ${{ secrets.coveralls }}
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: |
curl https://coveralls.io/webhook?repo_token=${{ secrets.coveralls }} -d "payload[build_num]=${{ github.sha }}&payload[status]=done"
130 changes: 130 additions & 0 deletions .github/workflows/build_multi_numpy_scipy.yml
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name: Build-Test-Multi-Scipy-Numpy
on:
push:
branches: [release]
pull_request:
branches: [master, release]

jobs:
build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
numpy: ['2.0.1'] #['1.16.5', '1.18.5', '1.20.3', '1.22.4', '1.24.4', '1.26.4', '2.0.1']
scipy: ['1.14.0'] #['1.7.3', '1.8.1', '1.9.3', '1.10.1', '1.12.0', '1.14.0']
python-version: ['3.10'] #['3.7', '3.8', '3.9', '3.10']
os: [ubuntu-latest]
architecture: ['x64']
include:
- numpy: '1.16.5'
scipy: '1.7.3'
python-version: '3.7'
- numpy: '1.18.5'
scipy: '1.7.3'
python-version: '3.7'
- numpy: '1.18.5'
scipy: '1.8.1'
python-version: '3.8'
- numpy: '1.18.5'
scipy: '1.9.3'
python-version: '3.8'
- numpy: '1.20.3'
scipy: '1.7.3'
python-version: '3.7'
- numpy: '1.20.3'
scipy: '1.7.3'
python-version: '3.8'
- numpy: '1.20.3'
scipy: '1.8.1'
python-version: '3.8'
- numpy: '1.20.3'
scipy: '1.9.3'
python-version: '3.8'
- numpy: '1.20.3'
scipy: '1.10.1'
python-version: '3.8'
- numpy: '1.22.4'
scipy: '1.7.3'
python-version: '3.8'
- numpy: '1.22.4'
scipy: '1.9.3'
python-version: '3.8'
- numpy: '1.22.4'
scipy: '1.10.1'
python-version: '3.8'
- numpy: '1.24.4'
scipy: '1.8.1'
python-version: '3.8'
- numpy: '1.24.4'
scipy: '1.9.3'
python-version: '3.10'
- numpy: '1.24.4'
scipy: '1.10.1'
python-version: '3.8'
- numpy: '1.24.4'
scipy: '1.12.0'
python-version: '3.9'
- numpy: '1.26.4'
scipy: '1.10.1'
python-version: '3.9'
- numpy: '1.26.4'
scipy: '1.12.0'
python-version: '3.9'
- numpy: '1.26.4'
scipy: '1.14.0'
python-version: '3.10'
- numpy: '2.0.1'
scipy: '1.14.0'
python-version: '3.10'
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }} ${{ matrix.architecture }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
architecture: ${{ matrix.architecture }}
- name: cache Linux
uses: actions/cache@v4
if: startsWith(runner.os, 'Linux')
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements_test.txt') }}
restore-keys: |
${{ runner.os }}-${{ runner.architecture }}-${{ runner.python-version }}pip-
- name: Install Ubuntu dependencies
if: startsWith(runner.os, 'Linux')
run: |
# Taken from scipy
sudo apt-get update
sudo apt-get install -y libopenblas-dev libatlas-base-dev liblapack-dev gfortran libgmp-dev libmpfr-dev libsuitesparse-dev ccache libmpc-dev
- name: Install dependencies
run: |
python -c "import platform; print(platform.platform()); print(platform.architecture())"
python -m pip install --upgrade pip
python -m pip install wheel
pip install -r requirements_test.txt
pip install numpy==${{ matrix.numpy }} scipy==${{ matrix.scipy }}
- name: Add numba
if: ${{ matrix.python-version == '3.6' || matrix.python-version == '3.7' || matrix.python-version == '3.8' || matrix.python-version == '3.9' || matrix.python-version == '3.10' || matrix.python-version == '3.11' || matrix.python-version == '3.12' }}
run: |
pip install numba
- name: Test with pytest
run: |
pytest . -v --cov-report html --cov=fluids --cov-report term-missing -m "not online and not thermo and not numba"
coveralls
env:
COVERALLS_REPO_TOKEN: ${{ secrets.coveralls }}
COVERALLS_PARALLEL: true
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
finish:
needs: build
runs-on: ubuntu-latest
steps:
- name: Coveralls Finished
env:
COVERALLS_REPO_TOKEN: ${{ secrets.coveralls }}
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: |
curl https://coveralls.io/webhook?repo_token=${{ secrets.coveralls }} -d "payload[build_num]=${{ github.sha }}&payload[status]=done"
6 changes: 5 additions & 1 deletion conftest.py
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Expand Up @@ -5,6 +5,10 @@
ver_tup = platform.python_version_tuple()[0:2]
ver_tup = tuple(int(i) for i in ver_tup)


is_x86_or_x86_64 = platform.machine().lower() in ('i386', 'i686', 'x86', 'x86_64', 'amd64')


def pytest_ignore_collect(path):
path = str(path)
if 'manual_runner' in path or 'make_test_stubs' in path or 'plot' in path or 'prerelease' in path:
Expand All @@ -15,7 +19,7 @@ def pytest_ignore_collect(path):
return True
if 'is_pypy' and 'test_spa' in path:
return True
if ver_tup < (3, 7) or ver_tup >= (3, 13) or is_pypy:
if ver_tup < (3, 7) or ver_tup >= (3, 13) or is_pypy or not is_x86_or_x86_64:
# numba does not yet run under pypy
if 'numba' in path:
return True
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9 changes: 9 additions & 0 deletions requirements_test_multiarch.txt
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pytest
pytest-cov
sympy
thefuzz
pint
pytz
IPython
sphinx
wheel
2 changes: 1 addition & 1 deletion tests/test_numerics.py
Original file line number Diff line number Diff line change
Expand Up @@ -512,7 +512,7 @@ def to_solve(x):

def test_is_poly_positive():
assert not is_poly_positive([4, 3, 2, 1])
for high in range(0, 100, 5):
for high in range(0, 30, 5):
assert is_poly_positive([4, 3, 2, 1], domain=(0, 10**high))

coeffs_4alpha = [2.1570803657937594e-10, 2.008831101045556e-06, -0.004656598178209313, 2.8575882247542514]
Expand Down

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