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Planned enhancements #6

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pcamara opened this issue Jun 5, 2017 · 1 comment
Open

Planned enhancements #6

pcamara opened this issue Jun 5, 2017 · 1 comment
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@pcamara
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pcamara commented Jun 5, 2017 •
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Some planned enhancements in scTDA (in random order):

  • Compatibility with Python 3 (through six)
  • Improve performance of connectivity_pvalue (through parallelization)
  • Implement gene ontologies
  • Implement relative subsampling
  • Implement histogram of edge contributions to gene connectivity
  • Improve open-source Mapper implementation (through better lens implementation)
  • Force usage of graphviz layouts
  • PEP8
@pcamara pcamara changed the title Panned enhancements Planned enhancements Jul 10, 2017
@SioKCronin
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Hi there! I've been studying TDA and have been looking for an open source project to help out with that aims to apply TDA to a meaningful problem. Is there still interest in these enhancements, or has your lab moved on to other projects?

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@pcamara @SioKCronin