DIG-1609: Fix an issue where having no response from HTSGet was treated as having all donors match #26
Workflow file for this run
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| name: Submodule PR | |
| on: | |
| push: | |
| branches: [develop] | |
| jobs: | |
| CanDIG-dispatch: | |
| runs-on: ubuntu-latest | |
| env: | |
| PARENT_REPOSITORY: 'CanDIG/CanDIGv2' | |
| CHECKOUT_BRANCH: 'develop' | |
| PR_AGAINST_BRANCH: 'develop' | |
| OWNER: 'CanDIG' | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: get PR data | |
| uses: actions/github-script@v7 | |
| id: get_pr_data | |
| with: | |
| script: | | |
| return ( | |
| await github.rest.repos.listPullRequestsAssociatedWithCommit({ | |
| commit_sha: context.sha, | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| }) | |
| ).data[0]; | |
| - name: Create PR in CanDIGv2 | |
| id: make_pr | |
| uses: CanDIG/github-action-pr-expanded@v4 | |
| with: | |
| github_token: ${{ secrets.SUBMODULE_PR }} | |
| parent_repository: ${{ env.PARENT_REPOSITORY }} | |
| checkout_branch: ${{ env.CHECKOUT_BRANCH}} | |
| pr_against_branch: ${{ env.PR_AGAINST_BRANCH }} | |
| pr_title: '${{ github.repository }} merging: ${{ fromJson(steps.get_pr_data.outputs.result).title }}' | |
| pr_description: "PR triggered by update to develop branch on ${{ github.repository }}. Commit hash: `${{ github.sha }}`. PR link: [#${{ fromJson(steps.get_pr_data.outputs.result).number }}](https://github.com/${{ github.repository }}/pull/${{ fromJson(steps.get_pr_data.outputs.result).number }})" | |
| owner: ${{ env.OWNER }} | |
| submodule_path: lib/query/query |