local files in case travis or similar is running

CanDIG · Apr 18, 2023 · 746f790 · 746f790
1 parent 07ca8d6
commit 746f790
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/.travis.yml b/.travis.yml
@@ -7,7 +7,7 @@ services:
   - docker
 
 env:
-  - MINIO_ROOT_USER=minioadmin MINIO_ROOT_PASSWORD=minioadmin MINIO_URL=http://localhost:9000 MINIO_ACCESS_KEY=minioadmin MINIO_SECRET_KEY=minioadmin HTSGET_TEST_KEY=thisisatest USE_MINIO_SANDBOX=True DB_PATH=data/files.db
+  - MINIO_ROOT_USER=minioadmin MINIO_ROOT_PASSWORD=minioadmin MINIO_URL=http://localhost:9000 MINIO_ACCESS_KEY=minioadmin MINIO_SECRET_KEY=minioadmin HTSGET_TEST_KEY=thisisatest USE_MINIO_SANDBOX=True DB_PATH=data/files.db SERVER_LOCAL_DATA=/home/travis/build/CanDIG/htsget_app/data
 
 before_install:
   - docker pull minio/minio

diff --git a/tests/test_htsget_server.py b/tests/test_htsget_server.py
@@ -9,6 +9,7 @@
 REPO_DIR = os.path.abspath(f"{os.path.dirname(os.path.realpath(__file__))}/..")
 sys.path.insert(0, os.path.abspath(f"{REPO_DIR}/htsget_server"))
 LOCAL_FILE_PATH = os.path.abspath(f"{REPO_DIR}/data/files")
+SERVER_LOCAL_DATA = os.getenv("SERVER_LOCAL_DATA", "/app/htsget_server/data")
 from config import PORT
 
 HOST = os.getenv("TESTENV_URL", f"http://localhost:{PORT}")
@@ -126,7 +127,7 @@ def test_post_update():
     obj = response.json()
 
     url = f"{HOST}/ga4gh/drs/v1/objects"
-    access_url = f"file:////app/htsget_server/data/files/NA18537.vcf.gz" # this is local within the htsget server container, not from where we're running pytest
+    access_url = f"file:///{SERVER_LOCAL_DATA}/files/NA18537.vcf.gz" # this is local within the htsget server container, not from where we're running pytest
     obj["access_methods"] = [
         {
             "type": "file",