add candig user/group and make sure it has db permission

CanDIG · Apr 18, 2023 · af02da6 · af02da6
1 parent 6fd63ff
commit af02da6
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diff --git a/Dockerfile b/Dockerfile
@@ -7,6 +7,8 @@ LABEL "candigv2"="htsget_app"
 
 USER root
 
+RUN addgroup -S candig && adduser -S candig -G candig
+
 RUN apk update
 
 RUN apk add --no-cache \

diff --git a/create_db.sh b/create_db.sh
@@ -12,6 +12,7 @@ sqlite3 -bail $db "SELECT * from ncbiRefSeq limit 1"
 if [[ $? -eq 1 ]]; then
     echo "initializing database..."
     sqlite3 $db -init data/files.sql "SELECT * from variantfile"
+    chown -R candig:candig $(dirname $db)
     echo "...done"
 fi
 

diff --git a/uwsgi.ini b/uwsgi.ini
@@ -6,4 +6,7 @@ http = 0.0.0.0:3000
 master = true
 processes = 4
 
+gid = candig
+uid = candig
+
 harakiri = 30