v4.0.0: Async indexing, service token

Summary of Changes

• Indexing changed to asynchronous task
• Adds service token support for Query
• Switched to hg38 for integration tests
• Query beacon results only return authorized results now

What's Changed

• DIG-1382, DIG-1384: query uses a service token with htsget by @daisieh in #282
• Switch hg37 to hg38 for the integration tests by @OrdiNeu in #283
• DIG-1459: Async indexing by @daisieh in #285
• DIG-1376 :Update GH Action to improve PR title and description by @mshadbolt in #286
• DIG-1463: Verify existence of genomic files by @daisieh in #287
• Reverting #239: Remove variantfile's optional genomic_id field by @daisieh in #288
• Fix Dispatch Action by @mshadbolt in #289
• DIG-1486, DIG-1487: Informative handling of indexing failures by @daisieh in #290
• Wait for indexing before continuing the test_index_variantfile test by @OrdiNeu in #291
• bug fix: when forcing indexing, mark the indexed bit as 0 by @daisieh in #292
• hotfix: biosampleId includes cohort, as documented in beacon yaml by @daisieh in #294
• DIG-1404: add variants and reads to sample by @daisieh in #293
• DIG-1511: Query beacon results should only return authorized results by @daisieh in #295

New Contributors

• @mshadbolt made their first contribution in #286

Full Changelog: v3.1.0...v4.0.0