4.2.0: Updates to logging, auth, server
No user-facing changes, but lots of fixes under the hood.
What's Changed
- v3.1.0: New authx, tweaks by @daisieh in #284
- v4.0.0: Async indexing, service token by @OrdiNeu in #296
- v4.1.0: pick up authx changes, add get_cohort_samples by @daisieh in #302
- DIG-1585: if results < AGGREGATE_COUNT_THRESHOLD, censor it by @daisieh in #303
- Hotfixes for stable by @daisieh in #305
- Removing minio from the stack by @daisieh in #306
- DIG-1144: Update to Python 3.12 by @daisieh in #280
- Bump flask-cors from 3.0.10 to 4.0.1 by @dependabot in #307
- metadata-db-user isn't a secret by @daisieh in #308
- Allow Query to access cohort samples without authorization by @OrdiNeu in #304
- DIG-1653: no more VAULT_S3_TOKEN by @daisieh in #309
- DIG-1664: Do not log service-info calls (prevent health check flooding) by @OrdiNeu in #310
- Don't pass in OPA_SECRET anymore by @daisieh in #311
- Stable hotfix for uhn prod by @daisieh in #312
- DIG-1660: Clean up variantfile when deleting drs objects by @daisieh in #314
- DIG-1650: Handle exceptions more gracefully by @daisieh in #315
- Replace 'single quote' in PR titles by @mshadbolt in #313
- DIG-1719: switch to candigv2-logging module by @daisieh in #316
- fix logging format by @daisieh in #317
- DIG-1750: use ~ instead of _ by @mshadbolt in #318
- rename db by @SonQBChau in #319
- Update requirements.txt by @daisieh in #320
- Bump flask-cors from 4.0.1 to 5.0.0 by @dependabot in #322
- DIG-1760: switch to gunicorn by @daisieh in #323
- DIG-1718: Disable file checksum calculations by @mshadbolt in #321
- DIG-1721, DIG-1776, DIG-1777: async htsget ingest by @daisieh in #324
- DIG-1710: switch from Travis to Github Actions by @daisieh in #325
- v4.2.0: Updates to logging, auth, server by @daisieh in #326
New Contributors
- @SonQBChau made their first contribution in #319
Full Changelog: v4.1.0...v4.2.0