4.2.0: Updates to logging, auth, server

No user-facing changes, but lots of fixes under the hood.

What's Changed

• v3.1.0: New authx, tweaks by @daisieh in #284
• v4.0.0: Async indexing, service token by @OrdiNeu in #296
• v4.1.0: pick up authx changes, add get_cohort_samples by @daisieh in #302
• DIG-1585: if results < AGGREGATE_COUNT_THRESHOLD, censor it by @daisieh in #303
• Hotfixes for stable by @daisieh in #305
• Removing minio from the stack by @daisieh in #306
• DIG-1144: Update to Python 3.12 by @daisieh in #280
• Bump flask-cors from 3.0.10 to 4.0.1 by @dependabot in #307
• metadata-db-user isn't a secret by @daisieh in #308
• Allow Query to access cohort samples without authorization by @OrdiNeu in #304
• DIG-1653: no more VAULT_S3_TOKEN by @daisieh in #309
• DIG-1664: Do not log service-info calls (prevent health check flooding) by @OrdiNeu in #310
• Don't pass in OPA_SECRET anymore by @daisieh in #311
• Stable hotfix for uhn prod by @daisieh in #312
• DIG-1660: Clean up variantfile when deleting drs objects by @daisieh in #314
• DIG-1650: Handle exceptions more gracefully by @daisieh in #315
• Replace 'single quote' in PR titles by @mshadbolt in #313
• DIG-1719: switch to candigv2-logging module by @daisieh in #316
• fix logging format by @daisieh in #317
• DIG-1750: use ~ instead of _ by @mshadbolt in #318
• rename db by @SonQBChau in #319
• Update requirements.txt by @daisieh in #320
• Bump flask-cors from 4.0.1 to 5.0.0 by @dependabot in #322
• DIG-1760: switch to gunicorn by @daisieh in #323
• DIG-1718: Disable file checksum calculations by @mshadbolt in #321
• DIG-1721, DIG-1776, DIG-1777: async htsget ingest by @daisieh in #324
• DIG-1710: switch from Travis to Github Actions by @daisieh in #325
• v4.2.0: Updates to logging, auth, server by @daisieh in #326

New Contributors

• @SonQBChau made their first contribution in #319

Full Changelog: v4.1.0...v4.2.0