Beacon v2 search

What's Changed

• DIG-1002: Integration testing for htsget/minio by @daisieh in #247
• Misc fixes by @daisieh in #248
• DIG-1073: dockerized minio for Travis by @daisieh in #250
• DIG-910: search for genomic region by gene name by @daisieh in #249
• DIG-1060: local files by @daisieh in #251
• Refactoring by @daisieh in #252
• DIG-1105: Beacon v2 for genomic variants by @daisieh in #253
• Beacon tweaks by @daisieh in #254
• Add candigv2 label to dockerfile by @daisieh in #255
• Fixes to allow pytest to run inside the container by @daisieh in #256
• DIG-1132: VCF-JSON results by @daisieh in #257
• DIG-932: Add uwsgi production deployment by @daisieh in #258

Full Changelog: v1.0.1...v2.0.0

Post-TFRI demo fixes, candigv2-authx updates

What's Changed

• Update pysam to 0.20.0 by @pyup-bot in #243
• Edge case: if vcfs haven't been indexed, don't fail search by @daisieh in #241
• Update sqlalchemy to 1.4.44 by @pyup-bot in #244
• DIG-895: consolidate to candigv2-authx by @daisieh in #245
• Tiny fixes that slipped through by @daisieh in #246

Full Changelog: v1.0.0...v1.0.1

TFRI demo

What's Changed

• Variant search (and indexing) by @daisieh in #228
• Update sqlalchemy to 1.4.42 by @pyup-bot in #229
• Update minio to 7.1.12 by @pyup-bot in #232
• Update pytest to 7.1.3 by @pyup-bot in #233
• Update connexion to 2.14.1 by @pyup-bot in #231
• Update flask to 2.2.2 by @pyup-bot in #230
• More fixes for search and indexing by @daisieh in #234
• Precise region search by @daisieh in #236

Full Changelog: v0.1.8...v1.0.0

tiny auth fixes

Merge pull request #224 from CanDIG/daisieh/opa-secret

Opa secret

Bug fixes

Merge pull request #214 from CanDIG/daisieh/paths

Paths and other fixes

Authentication, Vault S3 integration

Merge pull request #209 from CanDIG/pyup-update-minio-7.1.7-to-7.1.9

Update minio to 7.1.9

v0.1.5

Merge pull request #156 from CanDIG/pyup-update-sqlalchemy-1.4.25-to-…

v0.1.4

Merge pull request #127 from CanDIG/pyup-update-flask-1.1.2-to-2.0.0

Update flask to 2.0.0

0.1.3

removed dependency cache