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Merge pull request #17 from CellMigStandOrg/gsergeant-master
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Added some documentation in the README
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agbeltran committed Jun 29, 2018
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[![Build Status](https://travis-ci.org/CellMigStandOrg/CMSO-datasets.svg?branch=master)](https://travis-ci.org/CellMigStandOrg/CMSO-datasets)
[![Python 3.6](https://img.shields.io/badge/python-3.6-blue.svg)](https://www.python.org/downloads/release/python-360/)

CMSO datasets
=============
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How to add a new dataset?
-------------------------

In order to submit a new dataset, a minimal set of information needs to be provided.
In order to submit a new dataset, a minimal set of information needs to be provided based on the [MIACME](https://github.com/CellMigStandOrg/MIACME) guidelines.

How to propose changes to an existing dataset?
----------------------------------------------

We welcome issues in the [tracker](https://github.com/CellMigStandOrg/CMSO-datasets/issues) as well as Pull Requests
suggesting changes to the datasets available in this repository.

How to run the dataset validation code from this repository?
------------------------------------------------------------

If you would like to run locally the dataset validation code from this repository, you can follow the following steps:

1. Clone the repository
```git clone https://github.com/CellMigStandOrg/CMSO-datasets```
1. We suggest you use a python virtual environment. So, if not already installed in your system, first install the virtual environment via `pip`:
`pip install virtualenv`
1. Create a virtual environment:
`virtualenv venv`
1. Then, activate the virtual environment:
`source venv/bin/activate`
1. Install the requirements:
`pip install -r requirements.txt`
1. Validate the ISA metadata:
`python check_isa.py`
1. Validate the biotracks datapackage:
`python check_dpkg.py`


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