production.yml

production:
  #sample_state_file: "/path/to/sample_state.csv"
  gain_pattern_name: p10xgain
  gain_job_id: 3
  gain_job_channels: 32
  exp_pattern_name: p10xexp
  exp_job_ids:
   - 3
   - 4
   - 6
  channels:
  - channel: green
    job_name: green10x
    detector_num: 1
    default_gain: 800
    max_gain: 800
  - channel: blue
    job_name: blue10x
    detector_num: 1
    default_gain: 505
    max_gain: 610
  - channel: yellow
    job_name: blue10x
    detector_num: 2
    default_gain: 655
    max_gain: 760
  - channel: red
    job_name: red10x
    detector_num: 2
    default_gain: 630
    max_gain: 735
  well_layout:
    x_fields: 2
    y_fields: 3

gain:
  channels:
  - channel: green
    init_gain: [450, 495, 540, 585, 630, 675, 720, 765, 810, 855, 900]
  - channel: blue
    # 63x
    #init_gain: [750, 730, 765, 800, 835, 870, 905]
    # 10x
    init_gain: [700, 735, 770, 805, 840, 875, 910]
  - channel: yellow
    # 63x
    #init_gain: [550, 585, 620, 655, 690, 725, 760]
    # 10x
    init_gain: [700, 735, 770, 805, 840, 875, 910]
  - channel: red
    # 63x
    #init_gain: [525, 560, 595, 630, 665, 700, 735]
    # 10x
    init_gain: [600, 635, 670, 705, 740, 775, 810]
  #save_dir: "/path/to/gains/dir"

rename_image:

leica:
  host: localhost
  #imaging_dir: '/path/to/imaging_dir'