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ChaissonLab

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  1. LRA LRA Public

    Long read aligner

    C++ 114 8

  2. vamos vamos Public

    VNTR annotation using motif selection

    C 31 5

  3. danbing-tk danbing-tk Public

    Toolkit for VNTR genotyping and repeat-pan genome graph construction

    Python 23 3

  4. TT-Mars TT-Mars Public

    Structural Variants Assessment Based on Haplotype-resolved Assemblies

    Python 21 4

  5. hmcnc hmcnc Public

    Forked from redndgreen8/hmcnc

    Hidden Markov Model based Copy number caller

    C++ 20

  6. SegDupAnnotation SegDupAnnotation Public

    Python 8 2

Repositories

Showing 10 of 26 repositories
  • SegDupAnnotation2 Public

    Count gene duplications.

    ChaissonLab/SegDupAnnotation2’s past year of commit activity
    Python 2 1 0 0 Updated Jan 8, 2025
  • Ctyper Public Forked from Walfred-MA/Ctyper

    Genotyping of paralog specific gene types

    ChaissonLab/Ctyper’s past year of commit activity
    C++ 1 MIT 1 0 0 Updated Dec 27, 2024
  • danbing-tk Public

    Toolkit for VNTR genotyping and repeat-pan genome graph construction

    ChaissonLab/danbing-tk’s past year of commit activity
    Python 23 BSD-3-Clause 3 6 1 Updated Dec 19, 2024
  • L1Scan Public

    Scan a bam file for l1 insertions.

    ChaissonLab/L1Scan’s past year of commit activity
    C++ 0 0 0 0 Updated Dec 17, 2024
  • chaissonlab.github.io Public
    ChaissonLab/chaissonlab.github.io’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Dec 12, 2024
  • vamos Public

    VNTR annotation using motif selection

    ChaissonLab/vamos’s past year of commit activity
    C 31 GPL-2.0 5 7 1 Updated Dec 5, 2024
  • rare-var-scratch Public
    ChaissonLab/rare-var-scratch’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 1 Updated Nov 27, 2024
  • hmcnc Public Forked from redndgreen8/hmcnc

    Hidden Markov Model based Copy number caller

    ChaissonLab/hmcnc’s past year of commit activity
    C++ 20 1 0 0 Updated Oct 23, 2024
  • CARD-VNTR Public

    Tandem repeat analysis for the CARD consortium

    ChaissonLab/CARD-VNTR’s past year of commit activity
    WDL 1 1 0 1 Updated Oct 10, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    ChaissonLab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,340 0 0 Updated Oct 10, 2024
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