Skip to content

Latest commit

 

History

History
4 lines (4 loc) · 352 Bytes

README.md

File metadata and controls

4 lines (4 loc) · 352 Bytes

This is a simple program to search for L1Hs insertions in long-read data. Inserted sequences (currently hard-wired) at least 500bp are compared with the L1HS reference sequence as well as flanking reference sequences. A summary of both alignments as well as 5' and 3' TSDs are written for each insertion that aligns with at least 90% identity to L1HS.