fix a bug with new L-BFGS-B when optimizing state frequencies

Cibiv · Aug 26, 2015 · 96871dc · 96871dc
1 parent 92d1eeb
commit 96871dc
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/model/modelgtr.cpp b/model/modelgtr.cpp
@@ -455,7 +455,7 @@ void ModelGTR::setBounds(double *lower_bound, double *upper_bound, bool *bound_c
 		for (i = ndim-num_states+2; i <= ndim; i++) {
 //            lower_bound[i] = MIN_FREQUENCY/state_freq[highest_freq_state];
 //			upper_bound[i] = state_freq[highest_freq_state]/MIN_FREQUENCY;
-            lower_bound[i]  = 0.001;
+            lower_bound[i]  = MIN_FREQUENCY;
             upper_bound[i] = 100.0;
             bound_check[i] = false;
         }