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This repository has been archived by the owner on Feb 6, 2024. It is now read-only.

Beta version 1.6.6.b

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@bqminh bqminh released this 25 Jun 01:36
· 88 commits to master since this release

NOTE: Do not use this beta version unless you are asked to test it.

Bugfixes:

  • Memory leak in reading NEXUS alignment (possibly fix --runs option reported by David Maddison).
  • Crash with resampling strategy (-bsam) for standard bootstrap (-b) and jackknife (-j option).
  • Standard bootstrap with partition merging (-m ...MERGE) (reported by Guoqing Li).
  • Wrong error with codon models and -t RANDOM (reported by Karen Meusemann).
  • Parsing error with blank chars in partition file (reported by David Maddison).

Bugfixes from v1.6.6.a:

  • Issue with internal tree node names changed from slash to underscore (reported by JP Flandrois).
  • ASSERT with protein mixture models (reported by Giddy Landan).
  • Disallow specifying both --runs with -lmap option (reported by Giap Nguyen)
  • Reading nexus composite characters for non-DNA data (reported by a web user)
  • Support amino-acid O (22nd amino-acid), which is regarded as missing data (reported by Cuong).
  • Initialising free-rate model, which may create negative rates in rare cases (reported by Paul Frandsen).