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This repository has been archived by the owner on Feb 6, 2024. It is now read-only.

Beta version 1.7-beta3

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@bqminh bqminh released this 08 Oct 21:10
· 57 commits to master since this release
  • New option --model-joint MODEL to enforce joint model name for all partitions while rate heterogeneity is still unlinked.
  • Update Terraphast library (thanks Lukasz).
  • Proper parsimony branch lengths by ancestral reconstruction.
  • -bl-eval default to 1 (instead of 2) thanks to better parsimony branch lengths.
  • Faster and SIMD kernel for Sankoff parsimony.
  • Much faster parsimony with constraint tree.
  • Parallel computation of parsimony trees.

Bugfixes:

  • Crash with consensus construction for rooted trees.