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This repository contains the code for the analysis for "Cerebral organoids display dynamical clonal growth and tunable tissue replenishment" https://doi.org/10.1038/s41556-024-01412-z

  • Hamming Analyse (Fig. 1c): hamming/
  • Lineage Tracing, lineages, distribution (violin plots) (Fig. 1e-h, SFig. 1a,b, SFig. 3b-g): lineagetracing/
  • Simulations (Fig. 2, SFig. 5): simulation/
  • Foldchange Analysis (Fig. 4e-f, Fig. 5e): foldchange/

Before running any analysis, download the data by running the script data/get_data.py

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