Skip to content

Commit

Permalink
Delete unneeded images. Start working on quality control episode
Browse files Browse the repository at this point in the history
  • Loading branch information
evelyngreeves committed Jul 17, 2024
1 parent fd84ff9 commit c7e3c55
Show file tree
Hide file tree
Showing 188 changed files with 419 additions and 46,116 deletions.
507 changes: 45 additions & 462 deletions docs/lesson03-qc-pre-processing/02-QC-raw-reads.qmd

Large diffs are not rendered by default.

5,818 changes: 0 additions & 5,818 deletions docs/miscellanea/files/ERR4998593-pavian-report.html

This file was deleted.

187 changes: 0 additions & 187 deletions docs/miscellanea/files/ERR4998593_1_fastqc.html

This file was deleted.

187 changes: 0 additions & 187 deletions docs/miscellanea/files/ERR4998593_2_fastqc.html

This file was deleted.

361 changes: 0 additions & 361 deletions docs/miscellanea/files/ERR5000342_sub15_filt_nanoplot.html

This file was deleted.

361 changes: 0 additions & 361 deletions docs/miscellanea/files/ERR5000342_sub15_nanoplot.html

This file was deleted.

187 changes: 187 additions & 0 deletions docs/miscellanea/files/SRR6820491_1_fastqc.html

Large diffs are not rendered by default.

187 changes: 187 additions & 0 deletions docs/miscellanea/files/SRR6820491_2_fastqc.html

Large diffs are not rendered by default.

5,924 changes: 0 additions & 5,924 deletions docs/miscellanea/files/metaquast_report_ERR5000342.html

This file was deleted.

2,195 changes: 0 additions & 2,195 deletions docs/miscellanea/files/sankey-ERR4998593.report.html

This file was deleted.

Binary file removed images/02_fastqc_adap_ill.png
Binary file not shown.
Binary file removed images/02_fastqc_ill_quality.png
Binary file not shown.
Binary file removed images/02_lengthvsquality_filtered_log.png
Binary file not shown.
Binary file removed images/02_lengthvsquality_log.png
Binary file not shown.
Binary file removed images/03-01-01.png
Binary file not shown.
Binary file removed images/03-01-02.jpeg
Binary file not shown.
Binary file removed images/03-01-03.png
Binary file not shown.
Binary file removed images/03-01-04.png
Binary file not shown.
Binary file removed images/03-01-05.png
Binary file not shown.
Binary file removed images/03-01-06.png
Binary file not shown.
Binary file removed images/03-01-07.png
Binary file not shown.
Binary file removed images/03-01-08.png
Binary file not shown.
Binary file removed images/03-01-09.png
Binary file not shown.
Binary file removed images/03-01_LCA.png
Binary file not shown.
Binary file removed images/03-02-01.png
Binary file not shown.
Binary file removed images/03-02-02.png
Binary file not shown.
Binary file removed images/03-02-03.png
Binary file not shown.
Binary file removed images/03-02-04.png
Binary file not shown.
Binary file removed images/03-02-05.png
Binary file not shown.
Binary file removed images/03-02-06.png
Binary file not shown.
Binary file removed images/03-02-07.png
Binary file not shown.
Binary file removed images/03-02-phyla-freq-table.png
Binary file not shown.
Binary file removed images/03-03-01.png
Binary file not shown.
Binary file removed images/03-03-02.png
Binary file not shown.
Binary file removed images/03-03-03.png
Binary file not shown.
Binary file removed images/03-03-04.png
Diff not rendered.
Binary file removed images/03-04-01.png
Diff not rendered.
Binary file removed images/03-05-01.png
Diff not rendered.
Binary file removed images/03-06-01.png
Diff not rendered.
Binary file removed images/03-06-02.png
Diff not rendered.
Binary file removed images/03-06-03.png
Diff not rendered.
Binary file removed images/03-06-04.png
Diff not rendered.
Binary file removed images/03-06-05.png
Diff not rendered.
Binary file removed images/03-06-06.png
Diff not rendered.
Binary file removed images/03-06-07.png
Diff not rendered.
Binary file removed images/03-06-08.png
Diff not rendered.
Binary file removed images/03-07-01.png
Diff not rendered.
Binary file removed images/03-07-01e.png
Diff not rendered.
Binary file removed images/03-07-02.png
Diff not rendered.
Binary file removed images/03-07-03.png
Diff not rendered.
Binary file removed images/03-07-04.png
Diff not rendered.
Binary file removed images/03-07-05.png
Diff not rendered.
Binary file removed images/03-07-06.png
Diff not rendered.
Binary file removed images/03-08-01.png
Diff not rendered.
Binary file removed images/03-08-01e.png
Diff not rendered.
Binary file removed images/03-08-02.png
Diff not rendered.
Binary file removed images/03-08-02e.png
Diff not rendered.
Binary file removed images/03-08-03.png
Diff not rendered.
Binary file removed images/03-08-04.png
Diff not rendered.
Binary file removed images/03-08-05.png
Diff not rendered.
Binary file removed images/03-08-06.png
Diff not rendered.
Binary file removed images/03-08-07.png
Diff not rendered.
Binary file removed images/03-11-01.png
Diff not rendered.
Binary file removed images/03-11-02.png
Diff not rendered.
Binary file removed images/03-11-03.png
Diff not rendered.
Binary file removed images/03-11-04.png
Diff not rendered.
Binary file removed images/03-11-05.png
Diff not rendered.
Binary file removed images/03-11-06.png
Diff not rendered.
Binary file removed images/03-11-07.png
Diff not rendered.
Binary file removed images/03_01_pavian_column.png
Diff not rendered.
Binary file removed images/03_01_pavian_sample.png
Diff not rendered.
Binary file removed images/03_01_pavian_upload.png
Diff not rendered.
Binary file removed images/03_01_pavian_upload2.png
Diff not rendered.
Binary file removed images/03_02_phyla_freq_table.png
Diff not rendered.
Binary file removed images/03_02_phyla_freq_table_1.png
Diff not rendered.
Binary file removed images/03_02_phyla_freq_table_2.png
Diff not rendered.
Binary file removed images/03_02_phyloseq_taxtab.png
Diff not rendered.
Binary file removed images/03_02_phyloseq_taxtab_e.png
Diff not rendered.
Binary file removed images/03_02_plot_rich.png
Diff not rendered.
Binary file removed images/03_02_plot_rich2.png
Diff not rendered.
Binary file removed images/03_02_plot_rich3.png
Diff not rendered.
Binary file removed images/03_02_plot_rich4.png
Diff not rendered.
Binary file removed images/03_03_abs_phyl_plot.png
Diff not rendered.
Binary file removed images/03_03_abs_plot.png
Diff not rendered.
Binary file removed images/03_03_cyano.png
Diff not rendered.
Binary file removed images/03_03_deep.png
Diff not rendered.
Binary file removed images/03_03_glom_tax.png
Diff not rendered.
Binary file removed images/03_03_mapping.png
Diff not rendered.
Binary file removed images/03_03_phyla_venn.png
Diff not rendered.
Binary file removed images/03_03_proteo.png
Diff not rendered.
Binary file removed images/03_03_rel_abun.png
Diff not rendered.
Binary file removed images/03_03_rel_phyl_plot.png
Diff not rendered.
Binary file removed images/03_03_scatter_1.png
Diff not rendered.
Binary file removed images/03_03_scatter_annotated.png
Diff not rendered.
Binary file removed images/03_03_scatter_logged.png
Diff not rendered.
Binary file removed images/03_03_scatter_logged_with_line.png
Diff not rendered.
Binary file removed images/03_03_top5.png
Diff not rendered.
Binary file removed images/03_bandage_graph.png
Diff not rendered.
Binary file removed images/03_genomics_v_metagenomics.png
Diff not rendered.
Binary file removed images/03_metagenomics_wf.png
Diff not rendered.
Binary file removed images/03_short_analysis_flowchart_short_asm.png
Diff not rendered.
Binary file removed images/04_03_blast.png
Diff not rendered.
Binary file removed images/04_03_blast2.png
Diff not rendered.
Binary file removed images/04_03_blast3.png
Diff not rendered.
Binary file removed images/04_03_blast4.png
Diff not rendered.
Binary file removed images/04_03_blastkoala.png
Diff not rendered.
Binary file removed images/04_03_blastkoala_out.png
Diff not rendered.
Binary file removed images/04_03_blastkoala_upload.png
Diff not rendered.
Binary file removed images/04_polishing_diagram_v1.png
Diff not rendered.
Binary file removed images/05-metaquast_output.png
Diff not rendered.
Binary file removed images/16s-gene.png
Diff not rendered.
Binary file removed images/Binning(47).png
Diff not rendered.
Binary file removed images/Comparison.PNG
Diff not rendered.
Binary file removed images/ERR4998593_1_adapter.png
Diff not rendered.
Binary file removed images/ERR4998593_1_pbsq.png
Diff not rendered.
Binary file removed images/ERR4998593_2_adapter.png
Diff not rendered.
Binary file removed images/ERR4998593_2_pbsq.png
Diff not rendered.
Binary file removed images/EnsambladoFinal.png
Diff not rendered.
Binary file removed images/Fig33.png
Diff not rendered.
Binary file removed images/Fig5.png
Diff not rendered.
Binary file removed images/KAIJU_website.png
Diff not rendered.
Binary file removed images/LengthvsQualityScatterPlot_loglength_dot.png
Diff not rendered.
Binary file removed images/NrowFlag.png
Diff not rendered.
Binary file removed images/ResultsOverview.PNG
Diff not rendered.
Binary file added images/SRR6820491_1_adapter.png
Binary file added images/SRR6820491_1_pbsq.png
Binary file added images/SRR6820491_2_adapter.png
Binary file added images/SRR6820491_2_pbsq.png
Binary file removed images/SampleSelected.PNG
Diff not rendered.
Binary file removed images/Schao1.png
Diff not rendered.
Binary file removed images/SortbyFlag.png
Diff not rendered.
Binary file removed images/TitleFlag.png
Diff not rendered.
Binary file removed images/analysis_flowchart_v3.png
Diff not rendered.
Binary file removed images/binning_jigsaw_diagram.png
Diff not rendered.
Binary file removed images/bioinformatic workflow.png
Diff not rendered.
Binary file removed images/checkm_results_excel.png
Diff not rendered.
Binary file removed images/cloud-computing-wikipedia.svg.png
Diff not rendered.
Binary file removed images/cloud-interconnected-resources.png
Diff not rendered.
Binary file removed images/cloud-is-the-internet.png
Diff not rendered.
Binary file removed images/clouds_cropped.jpg
Diff not rendered.
Binary file removed images/episode-format-small.png
Diff not rendered.
28,604 changes: 0 additions & 28,604 deletions images/episode-format.eps

This file was deleted.

Binary file removed images/episode-format.png
Diff not rendered.
2 changes: 0 additions & 2 deletions images/equation.svg
Diff not rendered.
Binary file removed images/file-mapping.odg
Binary file not shown.
Loading

0 comments on commit c7e3c55

Please sign in to comment.