debug ci tests #27

	name: CI

	on:
	push:
	# Sequence of patterns matched against refs/heads
	branches:
	# Push events on main and dev branch
	- main
	- training-tests
	# Sequence of patterns matched against refs/tags
	tags: '*'

	jobs:
	build-and-test:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout repository
	uses: actions/checkout@v3

	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v3

	- name: Make run.sh executable
	run: chmod +x ./run.sh

	- name: Docker build training, backend, and frontend
	run: ./run.sh

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.x'

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r training/requirements.txt
	pip install pytest pytest-cov
	cd training && pip install -e .

	- name: Run tests with pytest and generate coverage
	run: \|
	cd /home/runner/work/AlphaFind/AlphaFind/training
	export PYTHONPATH=$PYTHONPATH:$(pwd)
	python -c "import sys; print(sys.path)"
	python -c "import alphafind_training; print(alphafind_training.__file__)"
	pytest -v --cov=. --cov-report=xml --cov-report=term-missing

	- name: Upload coverage report
	uses: actions/upload-artifact@v4
	with:
	name: coverage-report
	path: training/coverage.xml

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	file: ./training/coverage.xml
	fail_ci_if_error: true

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