Skip to content

Commit

Permalink
Update README.md (#1)
Browse files Browse the repository at this point in the history
Added AlphaFind, removed obsolete links, added link to our RG
  • Loading branch information
TerkaSlan authored Feb 20, 2024
1 parent 034817c commit 3e84db4
Showing 1 changed file with 8 additions and 2 deletions.
10 changes: 8 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -64,8 +64,7 @@ python3 eval/plot.py res.csv
- ~6h of runtime (waries depending on the hardware)

# LMI in action
- 🌐 [**Similarity search in 1M images**](https://web.lmi.dyn.cloud.e-infra.cz/images)
- 🌐 [**Similarity search in protein structures**](https://staging.proteins.dyn.cloud.e-infra.cz/protein-search)
🌐 [**Similarity search in 214M protein structures (AlphaFold DB)**](https://alphafind.fi.muni.cz/search)

# Publications

Expand All @@ -83,8 +82,15 @@ python3 eval/plot.py res.csv
- [**Mendeley data**](https://data.mendeley.com/datasets/8wp73zxr47/12)
> T. Slanináková, M. Antol, J. Ol'ha, V. Kaňa, V. Dohnal, S. Ladra, M. A. Martinez-Prieto: [Reproducible experiments with Learned Metric Index Framework](https://www.sciencedirect.com/science/article/pii/S0306437923000911). Information Systems, Volume 118, September 2023, 102255 (2023)
**"LMI in a large (214M) protein database" (2024):**
- [**Web**](https://alphafind.fi.muni.cz/search)
- [**Repository**](https://github.com/Coda-Research-Group/AlphaFind)
- [**Data**](https://data.narodni-repozitar.cz/general/datasets/d35zf-1ja47)
> PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL a Matej ANTOL.: [AlphaFind: Discover structure similarity across the entire known proteome](https://www.biorxiv.org/content/10.1101/2024.02.15.580465v1). BioRxiv (pre-print version)

## Team
🔎[**Complex data analysis research group**](https://disa.fi.muni.cz/complex-data-analysis)
- [Terézia Slanináková](https://github.com/TerkaSlan), Masaryk University
- [David Procházka](https://github.com/ProchazkaDavid), Masaryk University
- [Jaroslav Oľha](https://github.com/JaroOlha), Masaryk University
Expand Down

0 comments on commit 3e84db4

Please sign in to comment.