output
github_document

pathwayfindR

The goal of pathwayFindR is to ...

Installation

You can install the released version of pathwayFindR from r-universe with:

install.packages("pathwayfindR",
    repos = c(
        "https://cogdisreslab.r-universe.dev",
        "https://cran.r-project.org"
    )
)

Example

This is a basic example which shows you how to solve a common problem:

library(pathwayFindR)
#> Error in library(pathwayFindR): there is no package called 'pathwayFindR'
## basic example code

What is special about using README.Rmd instead of just README.md? You can include R chunks like so:

summary(cars)
#>      speed           dist
#>  Min.   : 4.0   Min.   :  2.00
#>  1st Qu.:12.0   1st Qu.: 26.00
#>  Median :15.0   Median : 36.00
#>  Mean   :15.4   Mean   : 42.98
#>  3rd Qu.:19.0   3rd Qu.: 56.00
#>  Max.   :25.0   Max.   :120.00

You'll still need to render README.Rmd regularly, to keep README.md up-to-date. devtools::build_readme() is handy for this.

You can also embed plots, for example:

plot of chunk pressure

In that case, don't forget to commit and push the resulting figure files, so they display on GitHub and CRAN.