Somehow returning to the dash-based separator instead of hash got scr…

…ewed up during the merge commit. For issue #64.
ComparativeGenomicsToolkit · Aug 28, 2017 · 3c58f80 · 3c58f80
1 parent 4ae1303
commit 3c58f80
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/cat/filter_transmap.py b/cat/filter_transmap.py
@@ -67,7 +67,7 @@ def hash_aln(aln):
         tools.procOps.run_proc(cmd, stdout=local_tmp)
         paralogy_alns = list(tools.psl.psl_iterator(local_tmp))
 
-    # local localBest IDs by using the hash table to figure out which ones we had
+    # load localBest IDs by using the hash table to figure out which ones we had
     local_best = {unfiltered[unfiltered_hash_table[hash_aln(aln)]] for aln in paralogy_alns}
     # report counts by biotype
     grouped = tools.psl.group_alignments_by_qname(local_best)

diff --git a/tools/nameConversions.py b/tools/nameConversions.py
@@ -5,7 +5,7 @@
 import re
 
 
-def remove_alignment_number(aln_id, aln_re=re.compile("#[0-9]+$")):
+def remove_alignment_number(aln_id, aln_re=re.compile("-[0-9]+$")):
     """
     If the name of the transcript ends with -d as in
     ENSMUST00000169901.2-1, return ENSMUST00000169901.2