Skip to content

Issues: ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

108 Open 131 Closed
108 Open 131 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

CAT should handle internal exon expansions enhancement
#320 opened Aug 1, 2024 by diekhans
transMapPsl doesn't show base mismatches in browser
#319 opened Jun 19, 2024 by diekhans
2
Unable to run annotation pipeline. Target h2tg000040l block 10438982-10444550 exceeds sequence length 10441754
#318 opened Apr 13, 2024 by smkumaill
CAT can't find gene duplications
#317 opened Mar 30, 2024 by DhakadPankaj
Concensue bigGenePred column name incorrect
#315 opened Mar 9, 2024 by diekhans
@ph09
1
CAT should not use Ensembl transcript names
#309 opened Feb 23, 2024 by diekhans
@ph09
CAT consensus track needs filters
#308 opened Feb 23, 2024 by diekhans
@ph09
Got exit code 1 (indicating failure) from job _toil_worker cgp file:/Comparative-Annotation-Toolkit/Darmor_A01_qwe/toil/augustus_cgp/jobStore kind-cgp/instance-cf_rpblx.
#307 opened Jan 8, 2024 by jwli-code
1
CAT T2T CHM13 GFF3 have gene_name mismatches between gene and transcript records
#306 opened Dec 11, 2023 by diekhans
Error at filter_transmap.py
#305 opened Dec 6, 2023 by cbcunningham
2
TransMapPsl failed
#303 opened Oct 16, 2023 by DhakadPankaj
Potential enhancements
#302 opened Aug 17, 2023 by ph09
Improve docker installation and docs
#301 opened Aug 17, 2023 by ph09
Error when running CAT with --augustus-cgp mode
#296 opened Jul 7, 2023 by peter-d-fields
12
CAT fails on cleanup when there are .nfs files
#295 opened Jul 6, 2023 by diekhans
@ph09
1
ANNOTATION in the config file
#294 opened Jun 30, 2023 by GeorgeBGM
3
Capture stderr with Luigi
#292 opened Apr 24, 2023 by ph09
SF3B3 gene annotation missing in gff3
#286 opened Feb 28, 2023 by diekhans
1
Adjacent "exons" in GTF
#285 opened Feb 28, 2023 by diekhans
CAT on AWS
#284 opened Feb 20, 2023 by larryns
query regarding --ref-genome parameter
#283 opened Feb 19, 2023 by philge
Custom Augustus training parameters
#278 opened Jan 11, 2023 by 1Wencai
incorrect trackDb is generate
#275 opened Nov 18, 2022 by diekhans
test_data error
#274 opened Oct 9, 2022 by song984888
Singularity
#273 opened Aug 24, 2022 by marcovth
ProTip! Updated in the last three days: updated:>2025-01-04.