You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
The text was updated successfully, but these errors were encountered:
diekhans
changed the title
CAT T2T CHM13 GFF3 have gene_name mismatches better gene and transcript records
CAT T2T CHM13 GFF3 have gene_name mismatches between gene and transcript records
Dec 15, 2023
I've attached an example of EPHA2, which has the name MSTRG.59 in the gene records.
Also attached are a report on all of the gene name mismatches
gff3 is at https://s3-us-west-2.amazonaws.com/human-pangenomics/T2T/CHM13/assemblies/annotation/chm13.draft_v2.0.gene_annotation.gff3
I suggest adding a sanity check before writing the file that all of the records for a given gene have the same gene_name
MSTRG.59-EPHA2.gff3.gz
gene_annotation_probs.tsv.gz
The text was updated successfully, but these errors were encountered: