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Concensue bigGenePred column name incorrect #315

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diekhans opened this issue Mar 9, 2024 · 1 comment

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diekhans commented Mar 9, 2024 •

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The consensus bigGenePred puts the gene id in a column named geneName; this should be denied. The gene name is in the generic name2 column.

I haven't looks how this is stored in the GFF3

diekhans assigned ph09

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diekhans commented Mar 9, 2024

Other names are maddeningly inconsistent like:

  string txId; "Transcript ID"
    string type;        "Transcript type"
    string geneName;    "Gene ID"
    string geneType;    "Gene type"
    string sourceGene;    "Source gene ID"
    string sourceTranscript;    "Source transcript ID"
    string alignmentId;  "Alignment ID"

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