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transMapPsl doesn't show base mismatches in browser #319

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diekhans opened this issue Jun 19, 2024 · 2 comments
Open

transMapPsl doesn't show base mismatches in browser #319

diekhans opened this issue Jun 19, 2024 · 2 comments

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@diekhans
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This is because the query sequences has not been added to the bigPsl

also it would be good to to turn on these options by default:
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the query, orange for insertion in the middle of the query

@diekhans
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also, would be good to include source id information in transmap PSL

@diekhans
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for some reason, the query deletion lines don't show even when you turn them on. We need to investigate this. might be a browser bug.

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