halSnps - extract snps and corresponding coordinates across targetGenomes

[nicolo-tellini]

halSnps allows the extraction of snps declaring a refGenome and one or multiple targetGenomes.
The output is reported as below :

refSequence     refPosition     Scer    Spar 
chrI_Scer       4       A       A                                          
chrI_Scer       10      C       A    

is it possible to return also the corresponding genomic coordinates of the genome "Spar" along with the allele? so, for example,

refSequence     refPosition     Scer    Spar  targetGenome1Sequence  targetGenome1Position
chrI_Scer       4       A       A      chrI_Spar      6                                          
chrI_Scer       10      C       A      chrI_Spar     15

and so on for all the "targetGenome" provided as input?

[nicolo-tellini]

Hi,

is there any way to achieve that?

thanks