Release Release V2.3 · ComparativeGenomicsToolkit/hal

What's Changed

patch halReplaceGenomes so dimensions always set before segments by @glennhickey in #236
Fix PAF so snps and gaps included in cols 10 and 11, resp. by @glennhickey in #237
fix typo that was hidden by NDEBUG by @glennhickey in #238
patch halAddToBranch so dimensions always set before segments by @glennhickey in #239
fix UDC build by @glennhickey in #243
use --bedType instead of --outBedVersion by @glennhickey in #248
remove --tab option from halLiftover by @glennhickey in #249
Add jobstore arg to hal2assemblyHub doc+examples by @glennhickey in #251
Allow halAppendSubtree to be run with --inMemory by @glennhickey in #252
More memory fixes for halAppendSubtree by @glennhickey in #253
Close neighbors in halExtract to better work with --inMemory by @glennhickey in #254
add halRemoveSubtree by @glennhickey in #255
Adjust default HDF5 caching behaviour by @glennhickey in #256
Avoid reading all genome's sequences when possible by @glennhickey in #257
add halCloseGenome to C interface by @glennhickey in #258
patch halAppendSubtree so dimensions always set before segments by @thiagogenez in #260
Don't skip already-seen reference positions in hal2maf unless (--unique used). by @glennhickey in #261
fix off-by-1 bug when resizing name array by @glennhickey in #267
Fix bug where hdf5 genome internal caches get out of sync and crash by @glennhickey in #275
Cleaner Snakes by @glennhickey in #279

Full Changelog: release-V2.2...release-V2.3