aging_omics_datasets

This repo is for accumulating information of different aging related omics datasets appropriate for meta-analysis and aging clocks train. This repo also contains reprogramming related datasets since it is a part of our rejuvenation studies. Since omics datasets are typically huge in size, we store link, ID but not files typically. Most of these datasets are for mouse and human.

Without category

• ComputAge meta table - our manually curated table with omics datasets. Includes single-cell transcriptomics, single-cell methylation aging related data as well as single-cell transcriptomics of cell reprogramming (OSKM, OSK, etc.). This table is updated constantly.

• Multi-omics datasets - our earliest project which contains a lot of different bulk datasets. Will be merged with ComputAge meta table soon.

Gene expression data (transcriptomics, RNA-seq, microarray)

• Bulk reprogramming datasets from this preprint

• Bulk aging repo from this paper. Datasets are already preprocessed and ready for using.

DNA Methylation data

Chromatin accessibility (ATAC-seq)

Aging and reprogramming ATAC-seq datasets

Complete Blood Count data

NHANES dataset from the official web-site but file stored in this repo.

Survival datasets

ALEC project accumulates mouse survival data and studies the quality of control cohort data.