From 4df5039492702f8d079a94a68cc4f37f9cb06d7c Mon Sep 17 00:00:00 2001 From: shappiron Date: Wed, 15 Nov 2023 17:47:06 +0300 Subject: [PATCH] Update documentation --- .buildinfo | 2 +- README.html | 3 ++- bio/intro_aging_biology.html | 1 + dyn/complex_systems.html | 1 + dyn/system_resilience.html | 3 ++- genindex.html | 1 + intro.html | 1 + meth/meth.html | 1 + meth/meth_practice.html | 1 + ml/aging_clocks.html | 1 + projects/2023/dosi/report.html | 28 +++++++++++++++++----- projects/2023/meta/report.html | 24 +++++++++++++++---- projects/2023/parkinson/report.html | 24 +++++++++++++++---- projects/2023/unsupervized/report.html | 24 +++++++++++++++---- projects/template.html | 1 + search.html | 1 + stat/differential_analysis_practice.html | 30 ++++++++++++++++++------ stat/survival_analysis.html | 1 + 18 files changed, 120 insertions(+), 28 deletions(-) diff --git a/.buildinfo b/.buildinfo index 19e261c..c291bae 100644 --- a/.buildinfo +++ b/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: c75b2b23d357bdc6fe0eb2a1981d840b +config: f026a93d2d19a91a93d729c553c47f06 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/README.html b/README.html index 4508ad8..845d8e5 100644 --- a/README.html +++ b/README.html @@ -50,6 +50,7 @@ const thebe_selector_output = ".output, .cell_output" + @@ -141,7 +142,7 @@

Computational aging book

  • - Practice - WGCNA on DNAm + Practice - WGCNA for Methylomics
  • diff --git a/bio/intro_aging_biology.html b/bio/intro_aging_biology.html index 525f317..2ac8143 100644 --- a/bio/intro_aging_biology.html +++ b/bio/intro_aging_biology.html @@ -50,6 +50,7 @@ const thebe_selector_output = ".output, .cell_output" + diff --git a/dyn/complex_systems.html b/dyn/complex_systems.html index 31f47a2..c1259dd 100644 --- a/dyn/complex_systems.html +++ b/dyn/complex_systems.html @@ -52,6 +52,7 @@ + diff --git a/dyn/system_resilience.html b/dyn/system_resilience.html index 3b765c9..b3b017e 100644 --- a/dyn/system_resilience.html +++ b/dyn/system_resilience.html @@ -52,6 +52,7 @@ + @@ -145,7 +146,7 @@

    Computational aging book

  • - Practice - WGCNA on DNA methylation + Practice - WGCNA for Methylomics
  • diff --git a/genindex.html b/genindex.html index 16bc99b..28fcc84 100644 --- a/genindex.html +++ b/genindex.html @@ -49,6 +49,7 @@ const thebe_selector_output = ".output, .cell_output" + diff --git a/intro.html b/intro.html index 11e4667..bcc867f 100644 --- a/intro.html +++ b/intro.html @@ -50,6 +50,7 @@ const thebe_selector_output = ".output, .cell_output" + diff --git a/meth/meth.html b/meth/meth.html index ff584f1..438754b 100644 --- a/meth/meth.html +++ b/meth/meth.html @@ -50,6 +50,7 @@ const thebe_selector_output = ".output, .cell_output" + diff --git a/meth/meth_practice.html b/meth/meth_practice.html index 3e97862..01c4b21 100644 --- a/meth/meth_practice.html +++ b/meth/meth_practice.html @@ -50,6 +50,7 @@ const thebe_selector_output = ".output, .cell_output" + diff --git a/ml/aging_clocks.html b/ml/aging_clocks.html index 22e74cf..77cd992 100644 --- a/ml/aging_clocks.html +++ b/ml/aging_clocks.html @@ -52,6 +52,7 @@ + diff --git a/projects/2023/dosi/report.html b/projects/2023/dosi/report.html index 4c659ac..f990f22 100644 --- a/projects/2023/dosi/report.html +++ b/projects/2023/dosi/report.html @@ -52,10 +52,11 @@ + - + @@ -138,9 +139,19 @@

    Computational aging book

    2. Differential expression analysis
    • +
  • + + 3. Omics Data Analysis in Aging: Methylomics + +
    • +
  • + + Practice - WGCNA for Methylomics + +
  • - 3. Survival analysis + 4. Survival analysis
    • @@ -152,7 +163,12 @@

    Computational aging book

    @@ -164,12 +180,12 @@

    Computational aging book

    @@ -741,7 +757,7 @@

    Credits

    previous

    -

    6. System resilience

    +

    7. System resilience

     diff --git a/projects/2023/meta/report.html b/projects/2023/meta/report.html index ac54c23..a632383 100644 --- a/projects/2023/meta/report.html +++ b/projects/2023/meta/report.html @@ -52,6 +52,7 @@ + @@ -138,9 +139,19 @@

    Computational aging book

    2. Differential expression analysis     +
  • + + 3. Omics Data Analysis in Aging: Methylomics + +
    • +
  • + + Practice - WGCNA for Methylomics + +
  • - 3. Survival analysis + 4. Survival analysis
    • @@ -152,7 +163,12 @@

    Computational aging book

    @@ -164,12 +180,12 @@

    Computational aging book

    diff --git a/projects/2023/parkinson/report.html b/projects/2023/parkinson/report.html index 8c9f636..b702401 100644 --- a/projects/2023/parkinson/report.html +++ b/projects/2023/parkinson/report.html @@ -52,6 +52,7 @@ + @@ -138,9 +139,19 @@

    Computational aging book

    2. Differential expression analysis +
  • + + 3. Omics Data Analysis in Aging: Methylomics + +
    • +
  • + + Practice - WGCNA for Methylomics + +
  • - 3. Survival analysis + 4. Survival analysis
    • @@ -152,7 +163,12 @@

    Computational aging book

    @@ -164,12 +180,12 @@

    Computational aging book

    diff --git a/projects/2023/unsupervized/report.html b/projects/2023/unsupervized/report.html index 9900b80..d6a60c6 100644 --- a/projects/2023/unsupervized/report.html +++ b/projects/2023/unsupervized/report.html @@ -50,6 +50,7 @@ const thebe_selector_output = ".output, .cell_output" + @@ -135,9 +136,19 @@

    Computational aging book

    2. Differential expression analysis +
  • + + 3. Omics Data Analysis in Aging: Methylomics + +
    • +
  • + + Practice - WGCNA for Methylomics + +
  • - 3. Survival analysis + 4. Survival analysis
    • @@ -149,7 +160,12 @@

    Computational aging book

    @@ -161,12 +177,12 @@

    Computational aging book

    diff --git a/projects/template.html b/projects/template.html index 9a35d27..3b07adf 100644 --- a/projects/template.html +++ b/projects/template.html @@ -52,6 +52,7 @@ + diff --git a/search.html b/search.html index 71e411b..ec3decd 100644 --- a/search.html +++ b/search.html @@ -52,6 +52,7 @@ + diff --git a/stat/differential_analysis_practice.html b/stat/differential_analysis_practice.html index f216e88..97d2732 100644 --- a/stat/differential_analysis_practice.html +++ b/stat/differential_analysis_practice.html @@ -52,9 +52,10 @@ + - + @@ -138,9 +139,19 @@

    Computational aging book

    2. Differential expression analysis +
  • + + 3. Omics Data Analysis in Aging: Methylomics + +
    • +
  • + + Practice - WGCNA for Methylomics + +
  • - 3. Survival analysis + 4. Survival analysis
    • @@ -152,7 +163,12 @@

    Computational aging book

    @@ -164,12 +180,12 @@

    Computational aging book

    @@ -1230,10 +1246,10 @@

    2.10. References1. Introduction to Aging Biology

     - +

    next

    -

    3. Survival analysis

    +

    3. Omics Data Analysis in Aging: Methylomics

     diff --git a/stat/survival_analysis.html b/stat/survival_analysis.html index 165e53d..909ea01 100644 --- a/stat/survival_analysis.html +++ b/stat/survival_analysis.html @@ -52,6 +52,7 @@ +