gws_biota is a Constellab library (called bricks) developped by Gencovery. GWS stands for Gencovery Web Services.
✨ Gencovery is a software company that offers Constellab., the leading open and secure digital infrastructure designed to consolidate data and unlock its full potential in the life sciences industry. Gencovery's mission is to provide universal access to data to enhance people's health and well-being.
🌍 With our Fair Open Access offer, you can use Constellab for free. Sign up here. Find more information about the Open Access offer here (link to be defined).
Biota is a unified and structured collection of omics data from official open European biological databases. It is dedicated to Gencovery Web Services for the conception and use of digital twins of cell metabolism.
📄 For gws_biota brick documentation, click here
💫 For Constellab application documentation, click here
The gws_biota brick requires the gws_core brick.
he best way to install a brick is through the Constellab platform. With our Fair Open Access offer, you get a free cloud data lab where you can install bricks directly. Sign up here
Learn about the data lab here : Overview and Data lab management
This section is for users who want to install the brick manually. It can also be used to install the brick manually in the Constellab Codelab.
We recommend installing using Ubuntu 22.04 with python 3.10.
Required packages are listed in the settings.json file, for now the packages must be installed manually.
pip install biopython==1.79 pronto==2.5.7 ujson==5.10.0 pyparsing==3.0.6python3 manage.py --runserver🕵️ To run a given unit test
python3 manage.py --test [TEST_FILE_NAME]Replace [TEST_FILE_NAME] with the name of the test file (without .py) in the tests folder.
🕵️ To run the whole test suite, use the following command:
python3 manage.py --test all📌 VSCode users can use the predefined run configuration in .vscode/launch.json.
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☎️ If you have any questions or suggestions, please feel free to contact us through our website: Constellab.
gws_biota is completely free and open-source and licensed under the GNU General Public License v3.0.
This brick is maintained with ❤️ by Gencovery.
