From 76164850f5adf1f58140a884a6667a25d04a33e2 Mon Sep 17 00:00:00 2001 From: Michael Aydinbas Date: Mon, 23 Oct 2023 21:33:51 +0200 Subject: [PATCH 01/12] Dev (#15) * Update os and poetry CI/CD versions #9 * Bump version to next major version #9 * Revert flake8 to ^3.0 for docstrings #9 --------- Co-authored-by: MarcoHuebner --- .github/workflows/run-tests.yaml | 8 +- poetry.lock | 706 +++++++++++-------------------- pyproject.toml | 16 +- 3 files changed, 256 insertions(+), 474 deletions(-) diff --git a/.github/workflows/run-tests.yaml b/.github/workflows/run-tests.yaml index 85edd1a..8a6d6e5 100644 --- a/.github/workflows/run-tests.yaml +++ b/.github/workflows/run-tests.yaml @@ -22,7 +22,7 @@ jobs: fail-fast: false matrix: python-version: ["3.9", "3.10"] - os: [ubuntu-18.04, macOS-latest, windows-latest] + os: [ubuntu-22.04, macOS-latest, windows-latest] steps: - uses: actions/checkout@v3 @@ -33,7 +33,7 @@ jobs: - name: Run poetry image uses: abatilo/actions-poetry@v2.0.0 with: - poetry-version: 1.1.13 + poetry-version: 1.6.1 - name: Install dependencies run: | poetry install @@ -44,8 +44,8 @@ jobs: strategy: fail-fast: false matrix: - python-version: [3.10.2] - poetry-version: [1.1.13] + python-version: [3.10.13] + poetry-version: [1.6.1] os: [ubuntu-latest] runs-on: ${{ matrix.os }} steps: diff --git a/poetry.lock b/poetry.lock index 25af73f..38caaee 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. [[package]] name = "anyio" version = "4.0.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -26,7 +25,6 @@ trio = ["trio (>=0.22)"] name = "appnope" version = "0.1.3" description = "Disable App Nap on macOS >= 10.9" -category = "dev" optional = false python-versions = "*" files = [ @@ -38,7 +36,6 @@ files = [ name = "argon2-cffi" version = "23.1.0" description = "Argon2 for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -59,7 +56,6 @@ typing = ["mypy"] name = "argon2-cffi-bindings" version = "21.2.0" description = "Low-level CFFI bindings for Argon2" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -97,7 +93,6 @@ tests = ["pytest"] name = "arrow" version = "1.3.0" description = "Better dates & times for Python" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -111,33 +106,26 @@ types-python-dateutil = ">=2.8.10" [package.extras] doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"] -test = ["dateparser (>=1.0.0,<2.0.0)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (>=3.0.0,<4.0.0)"] +test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"] [[package]] name = "astroid" -version = "2.15.8" +version = "3.0.1" description = "An abstract syntax tree for Python with inference support." -category = "dev" optional = false -python-versions = ">=3.7.2" +python-versions = ">=3.8.0" files = [ - 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"pytest-mock" version = "3.12.0" +version = "3.12.0" description = "Thin-wrapper around the mock package for easier use with pytest" optional = false python-versions = ">=3.8" +python-versions = ">=3.8" files = [ {file = "pytest-mock-3.12.0.tar.gz", hash = "sha256:31a40f038c22cad32287bb43932054451ff5583ff094bca6f675df2f8bc1a6e9"}, {file = "pytest_mock-3.12.0-py3-none-any.whl", hash = "sha256:0972719a7263072da3a21c7f4773069bcc7486027d7e8e1f81d98a47e701bc4f"}, + {file = "pytest-mock-3.12.0.tar.gz", hash = "sha256:31a40f038c22cad32287bb43932054451ff5583ff094bca6f675df2f8bc1a6e9"}, + {file = "pytest_mock-3.12.0-py3-none-any.whl", hash = "sha256:0972719a7263072da3a21c7f4773069bcc7486027d7e8e1f81d98a47e701bc4f"}, ] [package.dependencies] @@ -2753,12 +2958,15 @@ files = [ [[package]] name = "ruamel-yaml" version = "0.17.40" +version = "0.17.40" description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order" optional = false python-versions = ">=3" files = [ {file = "ruamel.yaml-0.17.40-py3-none-any.whl", hash = "sha256:b16b6c3816dff0a93dca12acf5e70afd089fa5acb80604afd1ffa8b465b7722c"}, {file = "ruamel.yaml-0.17.40.tar.gz", hash = "sha256:6024b986f06765d482b5b07e086cc4b4cd05dd22ddcbc758fa23d54873cf313d"}, + {file = "ruamel.yaml-0.17.40-py3-none-any.whl", hash = "sha256:b16b6c3816dff0a93dca12acf5e70afd089fa5acb80604afd1ffa8b465b7722c"}, + {file = "ruamel.yaml-0.17.40.tar.gz", hash = "sha256:6024b986f06765d482b5b07e086cc4b4cd05dd22ddcbc758fa23d54873cf313d"}, ] [package.dependencies] @@ -2766,6 +2974,7 @@ files = [ [package.extras] docs = ["mercurial (>5.7)", "ryd"] +docs = ["mercurial (>5.7)", "ryd"] jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"] [[package]] @@ -2816,18 +3025,22 @@ files = [ [[package]] name = "safety" version = "2.3.4" +version = "2.3.4" description = "Checks installed dependencies for known vulnerabilities and licenses." optional = false python-versions = "*" files = [ {file = "safety-2.3.4-py3-none-any.whl", hash = "sha256:6224dcd9b20986a2b2c5e7acfdfba6bca42bb11b2783b24ed04f32317e5167ea"}, {file = "safety-2.3.4.tar.gz", hash = "sha256:b9e74e794e82f54d11f4091c5d820c4d2d81de9f953bf0b4f33ac8bc402ae72c"}, + {file = "safety-2.3.4-py3-none-any.whl", hash = "sha256:6224dcd9b20986a2b2c5e7acfdfba6bca42bb11b2783b24ed04f32317e5167ea"}, + {file = "safety-2.3.4.tar.gz", hash = "sha256:b9e74e794e82f54d11f4091c5d820c4d2d81de9f953bf0b4f33ac8bc402ae72c"}, ] [package.dependencies] Click = ">=8.0.2" dparse = ">=0.6.2" packaging = ">=21.0" +packaging = ">=21.0" requests = "*" "ruamel.yaml" = ">=0.17.21" setuptools = ">=19.3" @@ -3098,6 +3311,17 @@ files = [ {file = "tzdata-2023.3.tar.gz", hash = "sha256:11ef1e08e54acb0d4f95bdb1be05da659673de4acbd21bf9c69e94cc5e907a3a"}, ] +[[package]] +name = "tzdata" +version = "2023.3" +description = "Provider of IANA time zone data" +optional = false +python-versions = ">=2" +files = [ + {file = "tzdata-2023.3-py2.py3-none-any.whl", hash = "sha256:7e65763eef3120314099b6939b5546db7adce1e7d6f2e179e3df563c70511eda"}, + {file = "tzdata-2023.3.tar.gz", hash = "sha256:11ef1e08e54acb0d4f95bdb1be05da659673de4acbd21bf9c69e94cc5e907a3a"}, +] + [[package]] name = "uri-template" version = "1.3.0" @@ -3231,4 +3455,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "b1c3070c0b45da2464c1a1724a71289da74ebce7c787c952acd0f58e7b2d327b" +content-hash = "a7aa1028e3ad39d965f2052176adeadad7989539abad45e018e513f0807addb6" diff --git a/pyproject.toml b/pyproject.toml index f606dad..0eac569 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -38,26 +38,33 @@ classifiers = [ python = "^3.9" requests = "^2.27.1" pandas = "^2.0" +pandas = "^2.0" tabulate = "^0.8.10" [tool.poetry.dev-dependencies] bandit = "^1.7.4" black = "^23.0" +black = "^23.0" flake8-docstrings = "^1.6.0" isort = "^5.10.1" mypy = "^1.0" pre-commit = "^3.0" pylint = "^3.0" +mypy = "^1.0" +pre-commit = "^3.0" +pylint = "^3.0" pytest = "^7.1.1" pytest-cov = "^4.0" +pytest-cov = "^4.0" safety = "^2.0.0" -flake8 = "^3.0" +flake8 = "^6.0" jupyter = "^1.0.0" pytest-mock = "^3.8.2" [tool.black] line-length = 80 target-version = ['py310'] +target-version = ['py310'] [build-system] build-backend = "poetry.core.masonry.api" From 8325021dbdc4b422854e301252afbfdc3c3a9f36 Mon Sep 17 00:00:00 2001 From: MarcoHuebner Date: Sun, 22 Oct 2023 12:43:28 +0200 Subject: [PATCH 03/12] Revert flake8 to ^3.0 for docstrings #9 --- poetry.lock | 40 ++++++++++++++++++++-------------------- pyproject.toml | 2 +- 2 files changed, 21 insertions(+), 21 deletions(-) diff --git a/poetry.lock b/poetry.lock index e7a1200..897339a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -775,19 +775,19 @@ typing = ["typing-extensions (>=4.7.1)"] [[package]] name = "flake8" -version = "6.1.0" +version = "3.9.2" description = "the modular source code checker: pep8 pyflakes and co" optional = false -python-versions = ">=3.8.1" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" files = [ - {file = "flake8-6.1.0-py2.py3-none-any.whl", hash = "sha256:ffdfce58ea94c6580c77888a86506937f9a1a227dfcd15f245d694ae20a6b6e5"}, - {file = "flake8-6.1.0.tar.gz", hash = "sha256:d5b3857f07c030bdb5bf41c7f53799571d75c4491748a3adcd47de929e34cd23"}, + {file = "flake8-3.9.2-py2.py3-none-any.whl", hash = "sha256:bf8fd333346d844f616e8d47905ef3a3384edae6b4e9beb0c5101e25e3110907"}, + {file = "flake8-3.9.2.tar.gz", hash = "sha256:07528381786f2a6237b061f6e96610a4167b226cb926e2aa2b6b1d78057c576b"}, ] [package.dependencies] -mccabe = ">=0.7.0,<0.8.0" -pycodestyle = ">=2.11.0,<2.12.0" -pyflakes = ">=3.1.0,<3.2.0" +mccabe = ">=0.6.0,<0.7.0" +pycodestyle = ">=2.7.0,<2.8.0" +pyflakes = ">=2.3.0,<2.4.0" [[package]] name = "flake8-docstrings" @@ -1512,13 +1512,13 @@ traitlets = "*" [[package]] name = "mccabe" -version = "0.7.0" +version = "0.6.1" description = "McCabe checker, plugin for flake8" optional = false -python-versions = ">=3.6" +python-versions = "*" files = [ - {file = "mccabe-0.7.0-py2.py3-none-any.whl", hash = "sha256:6c2d30ab6be0e4a46919781807b4f0d834ebdd6c6e3dca0bda5a15f863427b6e"}, - {file = "mccabe-0.7.0.tar.gz", hash = "sha256:348e0240c33b60bbdf4e523192ef919f28cb2c3d7d5c7794f74009290f236325"}, + {file = "mccabe-0.6.1-py2.py3-none-any.whl", hash = "sha256:ab8a6258860da4b6677da4bd2fe5dc2c659cff31b3ee4f7f5d64e79735b80d42"}, + {file = "mccabe-0.6.1.tar.gz", hash = "sha256:dd8d182285a0fe56bace7f45b5e7d1a6ebcbf524e8f3bd87eb0f125271b8831f"}, ] [[package]] @@ -2323,13 +2323,13 @@ tests = ["pytest"] [[package]] name = "pycodestyle" -version = "2.11.1" +version = "2.7.0" description = "Python style guide checker" optional = false -python-versions = ">=3.8" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ - {file = "pycodestyle-2.11.1-py2.py3-none-any.whl", hash = "sha256:44fe31000b2d866f2e41841b18528a505fbd7fef9017b04eff4e2648a0fadc67"}, - {file = "pycodestyle-2.11.1.tar.gz", hash = "sha256:41ba0e7afc9752dfb53ced5489e89f8186be00e599e712660695b7a75ff2663f"}, + {file = "pycodestyle-2.7.0-py2.py3-none-any.whl", hash = "sha256:514f76d918fcc0b55c6680472f0a37970994e07bbb80725808c17089be302068"}, + {file = "pycodestyle-2.7.0.tar.gz", hash = "sha256:c389c1d06bf7904078ca03399a4816f974a1d590090fecea0c63ec26ebaf1cef"}, ] [[package]] @@ -2362,13 +2362,13 @@ toml = ["tomli (>=1.2.3)"] [[package]] name = "pyflakes" -version = "3.1.0" +version = "2.3.1" description = "passive checker of Python programs" optional = false -python-versions = ">=3.8" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ - {file = "pyflakes-3.1.0-py2.py3-none-any.whl", hash = "sha256:4132f6d49cb4dae6819e5379898f2b8cce3c5f23994194c24b77d5da2e36f774"}, - {file = "pyflakes-3.1.0.tar.gz", hash = "sha256:a0aae034c444db0071aa077972ba4768d40c830d9539fd45bf4cd3f8f6992efc"}, + {file = "pyflakes-2.3.1-py2.py3-none-any.whl", hash = "sha256:7893783d01b8a89811dd72d7dfd4d84ff098e5eed95cfa8905b22bbffe52efc3"}, + {file = "pyflakes-2.3.1.tar.gz", hash = "sha256:f5bc8ecabc05bb9d291eb5203d6810b49040f6ff446a756326104746cc00c1db"}, ] [[package]] @@ -3455,4 +3455,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "a7aa1028e3ad39d965f2052176adeadad7989539abad45e018e513f0807addb6" +content-hash = "b1c3070c0b45da2464c1a1724a71289da74ebce7c787c952acd0f58e7b2d327b" diff --git a/pyproject.toml b/pyproject.toml index 0eac569..59c8dce 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -57,7 +57,7 @@ pytest = "^7.1.1" pytest-cov = "^4.0" pytest-cov = "^4.0" safety = "^2.0.0" -flake8 = "^6.0" +flake8 = "^3.0" jupyter = "^1.0.0" pytest-mock = "^3.8.2" From d9d6d793641b4c345257015b5ee36d938049c013 Mon Sep 17 00:00:00 2001 From: Michael Aydinbas Date: Tue, 24 Oct 2023 19:21:45 +0200 Subject: [PATCH 04/12] add a notebook that shows how to run init_config --- nb/init_config.ipynb | 126 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 126 insertions(+) create mode 100644 nb/init_config.ipynb diff --git a/nb/init_config.ipynb b/nb/init_config.ipynb new file mode 100644 index 0000000..04b50c8 --- /dev/null +++ b/nb/init_config.ipynb @@ -0,0 +1,126 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 5, + "id": "0f4d35be-2e17-4e1a-8da4-0a3075f9911f", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Collecting python-dotenv\n", + " Downloading python_dotenv-1.0.0-py3-none-any.whl (19 kB)\n", + "Installing collected packages: python-dotenv\n", + "Successfully installed python-dotenv-1.0.0\n" + ] + } + ], + "source": [ + "!pip install python-dotenv" + ] + }, + { + "cell_type": "code", + "execution_count": 13, + "id": "888706f5-3a9e-4e0a-9ca6-fa430280bc03", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "pystatis version: 0.1.4\n" + ] + }, + { + "data": { + "text/plain": [ + "True" + ] + }, + "execution_count": 13, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "import os\n", + "\n", + "import dotenv\n", + "import pystatis\n", + "\n", + "print(\"pystatis version: \", pystatis.__version__)\n", + "dotenv.load_dotenv()" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "2c6fd817-ca4b-4843-bac9-c6e90e0b1f17", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "\u001b[0;31mSignature:\u001b[0m\n", + "\u001b[0mpystatis\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0minit_config\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m\u001b[0m\n", + "\u001b[0;34m\u001b[0m \u001b[0musername\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mstr\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\n", + "\u001b[0;34m\u001b[0m \u001b[0mpassword\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mstr\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\n", + "\u001b[0;34m\u001b[0m \u001b[0mconfig_dir\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mpathlib\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mPath\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mPosixPath\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'/Users/miay/.pystatis'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\n", + "\u001b[0;34m\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;34m->\u001b[0m \u001b[0;32mNone\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", + "\u001b[0;31mDocstring:\u001b[0m\n", + "One-time function to be called for new users to create a new config.ini with default values.\n", + "\n", + "Stores username and password for the GENESIS API, among other settings.\n", + "\n", + "Args:\n", + " username (str): username used to login to GENESIS-Online.\n", + " password (str): password used to login to GENESIS-Online.\n", + " config_dir (Path, optional): Path to the root config directory. Defaults to the user home directory.\n", + "\u001b[0;31mFile:\u001b[0m ~/git/github/CorrelAid/pystatis/src/pystatis/config.py\n", + "\u001b[0;31mType:\u001b[0m function" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "?pystatis.init_config" + ] + }, + { + "cell_type": "code", + "execution_count": 14, + "id": "899b9737-a208-4655-b3be-ad7c568cdd2d", + "metadata": {}, + "outputs": [], + "source": [ + "pystatis.init_config(username=os.environ[\"GENESIS_API_USER\"], password=os.environ[\"GENESIS_API_PASSWORD\"])" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.11.5" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} From 2b5139e32853e72c6e2779d725da2ceaac1169cd Mon Sep 17 00:00:00 2001 From: MarcoHuebner Date: Tue, 24 Oct 2023 21:29:01 +0200 Subject: [PATCH 05/12] Make dev dependencies optional, update lock and README #9 --- README.md | 2 +- poetry.lock | 283 +++++++++++++++++++++++-------------------------- pyproject.toml | 5 +- 3 files changed, 135 insertions(+), 155 deletions(-) diff --git a/README.md b/README.md index ca0b1e5..3ce991f 100644 --- a/README.md +++ b/README.md @@ -161,7 +161,7 @@ To contribute to this project, please follow these steps: 2. Install [poetry](https://python-poetry.org/docs/) inside your venv. You can do so either with `conda install poetry` or `pip install poetry`, depending on your package manager. 3. Clone the repository via git. 4. Change into the project root directory. -5. Run `poetry install` to create the virtual environment within `poetry`'s cache folder (run `poetry env info` to see the details of this new virtual environment). `poetry` has installed all dependencies for you, as well as the package `pystatis` itself. +5. Run `poetry install` to create the virtual environment within `poetry`'s cache folder (run `poetry env info` to see the details of this new virtual environment). Run `poetry install --with dev` to receive all additional developer dependencies. `poetry` has installed all dependencies for you, as well as the package `pystatis` itself. 6. Install pre-commit: `poetry run pre-commit install`. This will activate the pre-commit hooks that will run prior every commit to ensure code quality. 7. Do your changes. 8. Run `poetry run pytest` to see if all existing tests still run through. It is important to use `poetry run` to call `pytest` so that `poetry` uses the created virtual environment and not the system's default Python interpreter. Alternatively, you can run `poetry shell` to let `poetry` activate the virtual environment for the current session. Afterwards, you can run `pytest` as usual without any prefix. You can leave the poetry shell with the `exit` command. diff --git a/poetry.lock b/poetry.lock index 897339a..f4ddfea 100644 --- a/poetry.lock +++ b/poetry.lock @@ -179,15 +179,18 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte [[package]] name = "babel" -version = "2.13.0" +version = "2.13.1" description = "Internationalization utilities" optional = false python-versions = ">=3.7" files = [ - {file = "Babel-2.13.0-py3-none-any.whl", hash = "sha256:fbfcae1575ff78e26c7449136f1abbefc3c13ce542eeb13d43d50d8b047216ec"}, - {file = "Babel-2.13.0.tar.gz", hash = "sha256:04c3e2d28d2b7681644508f836be388ae49e0cfe91465095340395b60d00f210"}, + {file = "Babel-2.13.1-py3-none-any.whl", hash = "sha256:7077a4984b02b6727ac10f1f7294484f737443d7e2e66c5e4380e41a3ae0b4ed"}, + {file = "Babel-2.13.1.tar.gz", hash = "sha256:33e0952d7dd6374af8dbf6768cc4ddf3ccfefc244f9986d4074704f2fbd18900"}, ] +[package.dependencies] +setuptools = {version = "*", markers = "python_version >= \"3.12\""} + [package.extras] dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] @@ -245,49 +248,30 @@ lxml = ["lxml"] [[package]] name = "black" -version = "23.10.0" -version = "23.10.0" +version = "23.10.1" description = "The uncompromising code formatter." optional = false python-versions = ">=3.8" python-versions = ">=3.8" files = [ - 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"sha256:6024b986f06765d482b5b07e086cc4b4cd05dd22ddcbc758fa23d54873cf313d"}, - {file = "ruamel.yaml-0.17.40-py3-none-any.whl", hash = "sha256:b16b6c3816dff0a93dca12acf5e70afd089fa5acb80604afd1ffa8b465b7722c"}, - {file = "ruamel.yaml-0.17.40.tar.gz", hash = "sha256:6024b986f06765d482b5b07e086cc4b4cd05dd22ddcbc758fa23d54873cf313d"}, + {file = "ruamel.yaml-0.18.2-py3-none-any.whl", hash = "sha256:92076ac8a83dbf44ca661dbed3c935229c8cbc2f10b05959dd3bd5292d8353d3"}, + {file = "ruamel.yaml-0.18.2.tar.gz", hash = "sha256:9bce33f7a814cea4c29a9c62fe872d2363d6220b767891d956eacea8fa5e6fe8"}, ] [package.dependencies] @@ -3355,13 +3332,13 @@ zstd = ["zstandard (>=0.18.0)"] [[package]] name = "virtualenv" -version = "20.24.5" +version = "20.24.6" description = "Virtual Python Environment builder" optional = false python-versions = ">=3.7" files = [ - {file = "virtualenv-20.24.5-py3-none-any.whl", hash = "sha256:b80039f280f4919c77b30f1c23294ae357c4c8701042086e3fc005963e4e537b"}, - {file = "virtualenv-20.24.5.tar.gz", hash = "sha256:e8361967f6da6fbdf1426483bfe9fca8287c242ac0bc30429905721cefbff752"}, + {file = "virtualenv-20.24.6-py3-none-any.whl", hash = "sha256:520d056652454c5098a00c0f073611ccbea4c79089331f60bf9d7ba247bb7381"}, + {file = "virtualenv-20.24.6.tar.gz", hash = "sha256:02ece4f56fbf939dbbc33c0715159951d6bf14aaf5457b092e4548e1382455af"}, ] [package.dependencies] @@ -3455,4 +3432,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "b1c3070c0b45da2464c1a1724a71289da74ebce7c787c952acd0f58e7b2d327b" +content-hash = "1063ee7d0b7827103507d5a86e1605ebf772e0fd92233b0d6eef10d44abf6983" diff --git a/pyproject.toml b/pyproject.toml index 59c8dce..bb5ac40 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -41,7 +41,10 @@ pandas = "^2.0" pandas = "^2.0" tabulate = "^0.8.10" -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev] +optional = true + +[tool.poetry.group.dev.dependencies] bandit = "^1.7.4" black = "^23.0" black = "^23.0" From 8b2dad2234ddc3e4fa6c3ec1eabb9b2bf0245eb2 Mon Sep 17 00:00:00 2001 From: MarcoHuebner Date: Tue, 24 Oct 2023 22:58:01 +0200 Subject: [PATCH 06/12] Update workflow install --with dev, add matrix poetry version #9 --- .github/workflows/run-tests.yaml | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/.github/workflows/run-tests.yaml b/.github/workflows/run-tests.yaml index 8a6d6e5..27fc519 100644 --- a/.github/workflows/run-tests.yaml +++ b/.github/workflows/run-tests.yaml @@ -22,6 +22,7 @@ jobs: fail-fast: false matrix: python-version: ["3.9", "3.10"] + poetry-version: [1.6.1] os: [ubuntu-22.04, macOS-latest, windows-latest] steps: @@ -33,10 +34,10 @@ jobs: - name: Run poetry image uses: abatilo/actions-poetry@v2.0.0 with: - poetry-version: 1.6.1 + poetry-version: ${{ matrix.poetry-version }} - name: Install dependencies run: | - poetry install + poetry install --with dev - name: Run tests run: | poetry run pytest --cov=pystatis tests @@ -44,8 +45,8 @@ jobs: strategy: fail-fast: false matrix: - python-version: [3.10.13] - poetry-version: [1.6.1] + python-version: ${{ matrix.python-version }} + poetry-version: ${{ matrix.poetry-version }} os: [ubuntu-latest] runs-on: ${{ matrix.os }} steps: @@ -58,7 +59,7 @@ jobs: with: poetry-version: ${{ matrix.poetry-version }} - name: Install dependencies - run: poetry install + run: poetry install --with dev - name: Run black run: poetry run black . --check - name: Run isort From ecd9c0029ad52fe91795bbd1de46f9971ceaf3c9 Mon Sep 17 00:00:00 2001 From: MarcoHuebner Date: Tue, 24 Oct 2023 23:07:03 +0200 Subject: [PATCH 07/12] Fix python and poetry version definition #9 --- .github/workflows/run-tests.yaml | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/.github/workflows/run-tests.yaml b/.github/workflows/run-tests.yaml index 27fc519..59bb3d9 100644 --- a/.github/workflows/run-tests.yaml +++ b/.github/workflows/run-tests.yaml @@ -14,6 +14,9 @@ on: - dev workflow_dispatch: +env: + POETRY_VERSION: 1.6.1 + jobs: test: runs-on: ${{ matrix.os }} @@ -22,7 +25,6 @@ jobs: fail-fast: false matrix: python-version: ["3.9", "3.10"] - poetry-version: [1.6.1] os: [ubuntu-22.04, macOS-latest, windows-latest] steps: @@ -34,7 +36,7 @@ jobs: - name: Run poetry image uses: abatilo/actions-poetry@v2.0.0 with: - poetry-version: ${{ matrix.poetry-version }} + poetry-version: $POETRY_VERSION - name: Install dependencies run: | poetry install --with dev @@ -45,8 +47,8 @@ jobs: strategy: fail-fast: false matrix: - python-version: ${{ matrix.python-version }} - poetry-version: ${{ matrix.poetry-version }} + # only support specific python version, as guidelines differ beween (minor) versions + python-version: ["3.10.13"] os: [ubuntu-latest] runs-on: ${{ matrix.os }} steps: @@ -57,7 +59,7 @@ jobs: - name: Run poetry image uses: abatilo/actions-poetry@v2.0.0 with: - poetry-version: ${{ matrix.poetry-version }} + poetry-version: $POETRY_VERSION - name: Install dependencies run: poetry install --with dev - name: Run black From 165017d7946677f54dec993dd5c0e5340b4f0cce Mon Sep 17 00:00:00 2001 From: MarcoHuebner Date: Tue, 24 Oct 2023 23:07:03 +0200 Subject: [PATCH 08/12] Fix python and poetry version definition #9 --- pyproject.toml | 7 ------- 1 file changed, 7 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index bb5ac40..ede1f42 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -38,7 +38,6 @@ classifiers = [ python = "^3.9" requests = "^2.27.1" pandas = "^2.0" -pandas = "^2.0" tabulate = "^0.8.10" [tool.poetry.group.dev] @@ -47,18 +46,13 @@ optional = true [tool.poetry.group.dev.dependencies] bandit = "^1.7.4" black = "^23.0" -black = "^23.0" flake8-docstrings = "^1.6.0" isort = "^5.10.1" mypy = "^1.0" pre-commit = "^3.0" pylint = "^3.0" -mypy = "^1.0" -pre-commit = "^3.0" -pylint = "^3.0" pytest = "^7.1.1" pytest-cov = "^4.0" -pytest-cov = "^4.0" safety = "^2.0.0" flake8 = "^3.0" jupyter = "^1.0.0" @@ -67,7 +61,6 @@ pytest-mock = "^3.8.2" [tool.black] line-length = 80 target-version = ['py310'] -target-version = ['py310'] [build-system] build-backend = "poetry.core.masonry.api" From 46de14ddc1e4abeb7f35d572acb9b86a5cbcae03 Mon Sep 17 00:00:00 2001 From: Michael Aydinbas Date: Wed, 25 Oct 2023 11:33:55 +0200 Subject: [PATCH 09/12] fix lock file --- poetry.lock | 240 ++++++---------------------------------------------- 1 file changed, 26 insertions(+), 214 deletions(-) diff --git a/poetry.lock b/poetry.lock index f4ddfea..0bcee2d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,5 +1,4 @@ # This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. [[package]] name = "anyio" @@ -108,21 +107,16 @@ types-python-dateutil = ">=2.8.10" [package.extras] doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"] test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"] -test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"] [[package]] name = "astroid" version = "3.0.1" -version = "3.0.1" description = "An abstract syntax tree for Python with inference support." optional = false python-versions = ">=3.8.0" -python-versions = ">=3.8.0" files = [ {file = "astroid-3.0.1-py3-none-any.whl", hash = "sha256:7d5895c9825e18079c5aeac0572bc2e4c83205c95d416e0b4fee8bc361d2d9ca"}, {file = "astroid-3.0.1.tar.gz", hash = "sha256:86b0bb7d7da0be1a7c4aedb7974e391b32d4ed89e33de6ed6902b4b15c97577e"}, - {file = "astroid-3.0.1-py3-none-any.whl", hash = "sha256:7d5895c9825e18079c5aeac0572bc2e4c83205c95d416e0b4fee8bc361d2d9ca"}, - {file = "astroid-3.0.1.tar.gz", hash = "sha256:86b0bb7d7da0be1a7c4aedb7974e391b32d4ed89e33de6ed6902b4b15c97577e"}, ] [package.dependencies] @@ -252,7 +246,6 @@ version = "23.10.1" description = "The uncompromising code formatter." optional = false python-versions = ">=3.8" -python-versions = ">=3.8" files = [ {file = "black-23.10.1-cp310-cp310-macosx_10_16_arm64.whl", hash = "sha256:ec3f8e6234c4e46ff9e16d9ae96f4ef69fa328bb4ad08198c8cee45bb1f08c69"}, {file = "black-23.10.1-cp310-cp310-macosx_10_16_x86_64.whl", hash = "sha256:1b917a2aa020ca600483a7b340c165970b26e9029067f019e3755b56e8dd5916"}, @@ -278,13 +271,10 @@ files = [ click = ">=8.0.0" mypy-extensions = ">=0.4.3" packaging = ">=22.0" -packaging = ">=22.0" pathspec = ">=0.9.0" platformdirs = ">=2" tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""} -tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} -typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""} [package.extras] colorama = ["colorama (>=0.4.3)"] @@ -802,15 +792,12 @@ files = [ [[package]] name = "gitdb" version = "4.0.11" -version = "4.0.11" description = "Git Object Database" optional = false python-versions = ">=3.7" files = [ {file = "gitdb-4.0.11-py3-none-any.whl", hash = "sha256:81a3407ddd2ee8df444cbacea00e2d038e40150acfa3001696fe0dcf1d3adfa4"}, {file = "gitdb-4.0.11.tar.gz", hash = "sha256:bf5421126136d6d0af55bc1e7c1af1c397a34f5b7bd79e776cd3e89785c2b04b"}, - {file = "gitdb-4.0.11-py3-none-any.whl", hash = "sha256:81a3407ddd2ee8df444cbacea00e2d038e40150acfa3001696fe0dcf1d3adfa4"}, - {file = "gitdb-4.0.11.tar.gz", hash = "sha256:bf5421126136d6d0af55bc1e7c1af1c397a34f5b7bd79e776cd3e89785c2b04b"}, ] [package.dependencies] @@ -819,15 +806,12 @@ smmap = ">=3.0.1,<6" [[package]] name = "gitpython" version = "3.1.40" -version = "3.1.40" description = "GitPython is a Python library used to interact with Git repositories" optional = false python-versions = ">=3.7" files = [ {file = "GitPython-3.1.40-py3-none-any.whl", hash = "sha256:cf14627d5a8049ffbf49915732e5eddbe8134c3bdb9d476e6182b676fc573f8a"}, {file = "GitPython-3.1.40.tar.gz", hash = "sha256:22b126e9ffb671fdd0c129796343a02bf67bf2994b35449ffc9321aa755e18a4"}, - {file = "GitPython-3.1.40-py3-none-any.whl", hash = "sha256:cf14627d5a8049ffbf49915732e5eddbe8134c3bdb9d476e6182b676fc573f8a"}, - {file = "GitPython-3.1.40.tar.gz", hash = "sha256:22b126e9ffb671fdd0c129796343a02bf67bf2994b35449ffc9321aa755e18a4"}, ] [package.dependencies] @@ -893,13 +877,13 @@ files = [ [[package]] name = "ipykernel" -version = "6.25.2" +version = "6.26.0" description = "IPython Kernel for Jupyter" optional = false python-versions = ">=3.8" files = [ - 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{file = "pytest-cov-4.1.0.tar.gz", hash = "sha256:3904b13dfbfec47f003b8e77fd5b589cd11904a21ddf1ab38a64f204d6a10ef6"}, - {file = "pytest_cov-4.1.0-py3-none-any.whl", hash = "sha256:6ba70b9e97e69fcc3fb45bfeab2d0a138fb65c4d0d6a41ef33983ad114be8c3a"}, ] [package.dependencies] @@ -2449,16 +2281,12 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale [[package]] name = "pytest-mock" version = "3.12.0" -version = "3.12.0" description = "Thin-wrapper around the mock package for easier use with pytest" optional = false python-versions = ">=3.8" -python-versions = ">=3.8" files = [ {file = "pytest-mock-3.12.0.tar.gz", hash = "sha256:31a40f038c22cad32287bb43932054451ff5583ff094bca6f675df2f8bc1a6e9"}, {file = "pytest_mock-3.12.0-py3-none-any.whl", hash = "sha256:0972719a7263072da3a21c7f4773069bcc7486027d7e8e1f81d98a47e701bc4f"}, - {file = "pytest-mock-3.12.0.tar.gz", hash = "sha256:31a40f038c22cad32287bb43932054451ff5583ff094bca6f675df2f8bc1a6e9"}, - {file = "pytest_mock-3.12.0-py3-none-any.whl", hash = "sha256:0972719a7263072da3a21c7f4773069bcc7486027d7e8e1f81d98a47e701bc4f"}, ] [package.dependencies] @@ -2951,7 +2779,6 @@ files = [ [package.extras] docs = ["mercurial (>5.7)", "ryd"] -docs = ["mercurial (>5.7)", "ryd"] jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"] [[package]] @@ -3002,22 +2829,18 @@ files = [ [[package]] name = "safety" version = "2.3.4" -version = "2.3.4" description = "Checks installed dependencies for known vulnerabilities and licenses." optional = false python-versions = "*" files = [ {file = "safety-2.3.4-py3-none-any.whl", hash = "sha256:6224dcd9b20986a2b2c5e7acfdfba6bca42bb11b2783b24ed04f32317e5167ea"}, {file = "safety-2.3.4.tar.gz", hash = "sha256:b9e74e794e82f54d11f4091c5d820c4d2d81de9f953bf0b4f33ac8bc402ae72c"}, - {file = "safety-2.3.4-py3-none-any.whl", hash = "sha256:6224dcd9b20986a2b2c5e7acfdfba6bca42bb11b2783b24ed04f32317e5167ea"}, - {file = "safety-2.3.4.tar.gz", hash = "sha256:b9e74e794e82f54d11f4091c5d820c4d2d81de9f953bf0b4f33ac8bc402ae72c"}, ] [package.dependencies] Click = ">=8.0.2" dparse = ">=0.6.2" packaging = ">=21.0" -packaging = ">=21.0" requests = "*" "ruamel.yaml" = ">=0.17.21" setuptools = ">=19.3" @@ -3242,18 +3065,18 @@ files = [ [[package]] name = "traitlets" -version = "5.11.2" +version = "5.12.0" description = "Traitlets Python configuration system" optional = false python-versions = ">=3.8" files = [ - {file = "traitlets-5.11.2-py3-none-any.whl", hash = "sha256:98277f247f18b2c5cabaf4af369187754f4fb0e85911d473f72329db8a7f4fae"}, - {file = "traitlets-5.11.2.tar.gz", hash = "sha256:7564b5bf8d38c40fa45498072bf4dc5e8346eb087bbf1e2ae2d8774f6a0f078e"}, + {file = "traitlets-5.12.0-py3-none-any.whl", hash = "sha256:81539f07f7aebcde2e4b5ab76727f53eabf18ad155c6ed7979a681411602fa47"}, + {file = "traitlets-5.12.0.tar.gz", hash = "sha256:833273bf645d8ce31dcb613c56999e2e055b1ffe6d09168a164bcd91c36d5d35"}, ] [package.extras] docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"] -test = ["argcomplete (>=3.0.3)", "mypy (>=1.5.1)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"] +test = ["argcomplete (>=3.0.3)", "mypy (>=1.6.0)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"] [[package]] name = "types-python-dateutil" @@ -3288,17 +3111,6 @@ files = [ {file = "tzdata-2023.3.tar.gz", hash = "sha256:11ef1e08e54acb0d4f95bdb1be05da659673de4acbd21bf9c69e94cc5e907a3a"}, ] -[[package]] -name = "tzdata" -version = "2023.3" -description = "Provider of IANA time zone data" -optional = false -python-versions = ">=2" -files = [ - {file = "tzdata-2023.3-py2.py3-none-any.whl", hash = "sha256:7e65763eef3120314099b6939b5546db7adce1e7d6f2e179e3df563c70511eda"}, - {file = "tzdata-2023.3.tar.gz", hash = "sha256:11ef1e08e54acb0d4f95bdb1be05da659673de4acbd21bf9c69e94cc5e907a3a"}, -] - [[package]] name = "uri-template" version = "1.3.0" From d00f651a780b7c7334fabcd471e8ce1b5d3c0fa5 Mon Sep 17 00:00:00 2001 From: Michael Aydinbas Date: Wed, 25 Oct 2023 11:35:31 +0200 Subject: [PATCH 10/12] update dev dependencies and add python-dotenv to dev --- poetry.lock | 18 ++++++++++++++++-- pyproject.toml | 1 + 2 files changed, 17 insertions(+), 2 deletions(-) diff --git a/poetry.lock b/poetry.lock index 0bcee2d..6d9a463 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2224,8 +2224,8 @@ astroid = ">=3.0.1,<=3.1.0-dev0" colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""} dill = [ {version = ">=0.2", markers = "python_version < \"3.11\""}, - {version = ">=0.3.6", markers = "python_version >= \"3.11\" and python_version < \"3.12\""}, {version = ">=0.3.7", markers = "python_version >= \"3.12\""}, + {version = ">=0.3.6", markers = "python_version >= \"3.11\" and python_version < \"3.12\""}, ] isort = ">=4.2.5,<6" mccabe = ">=0.6,<0.8" @@ -2309,6 +2309,20 @@ files = [ [package.dependencies] six = ">=1.5" +[[package]] +name = "python-dotenv" +version = "1.0.0" +description = "Read key-value pairs from a .env file and set them as environment variables" +optional = false +python-versions = ">=3.8" +files = [ + {file = "python-dotenv-1.0.0.tar.gz", hash = "sha256:a8df96034aae6d2d50a4ebe8216326c61c3eb64836776504fcca410e5937a3ba"}, + {file = "python_dotenv-1.0.0-py3-none-any.whl", hash = "sha256:f5971a9226b701070a4bf2c38c89e5a3f0d64de8debda981d1db98583009122a"}, +] + +[package.extras] +cli = ["click (>=5.0)"] + [[package]] name = "python-json-logger" version = "2.0.7" @@ -3244,4 +3258,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "1063ee7d0b7827103507d5a86e1605ebf772e0fd92233b0d6eef10d44abf6983" +content-hash = "2d7e7a3af1e597dfe6076741513ab7296bf2800a33357752f626f1e4e0b032c8" diff --git a/pyproject.toml b/pyproject.toml index ede1f42..6982380 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -57,6 +57,7 @@ safety = "^2.0.0" flake8 = "^3.0" jupyter = "^1.0.0" pytest-mock = "^3.8.2" +python-dotenv = "^1.0.0" [tool.black] line-length = 80 From a5dafa407220ade71b7852a53134e44d90855ecb Mon Sep 17 00:00:00 2001 From: Michael Aydinbas Date: Wed, 25 Oct 2023 11:49:22 +0200 Subject: [PATCH 11/12] improve readme --- README.md | 35 ++++++++++++++++++++++------------- 1 file changed, 22 insertions(+), 13 deletions(-) diff --git a/README.md b/README.md index 3ce991f..7427940 100644 --- a/README.md +++ b/README.md @@ -157,18 +157,27 @@ Contributions to this project are highly appreciated! You can either contact the To contribute to this project, please follow these steps: -1. Create a new virtual environment, for example with [conda](https://docs.conda.io/en/latest/) or the standard [venv](https://docs.python.org/3/library/venv.html) and make sure your Python version matches the minimum version for this project. -2. Install [poetry](https://python-poetry.org/docs/) inside your venv. You can do so either with `conda install poetry` or `pip install poetry`, depending on your package manager. -3. Clone the repository via git. -4. Change into the project root directory. -5. Run `poetry install` to create the virtual environment within `poetry`'s cache folder (run `poetry env info` to see the details of this new virtual environment). Run `poetry install --with dev` to receive all additional developer dependencies. `poetry` has installed all dependencies for you, as well as the package `pystatis` itself. -6. Install pre-commit: `poetry run pre-commit install`. This will activate the pre-commit hooks that will run prior every commit to ensure code quality. -7. Do your changes. -8. Run `poetry run pytest` to see if all existing tests still run through. It is important to use `poetry run` to call `pytest` so that `poetry` uses the created virtual environment and not the system's default Python interpreter. Alternatively, you can run `poetry shell` to let `poetry` activate the virtual environment for the current session. Afterwards, you can run `pytest` as usual without any prefix. You can leave the poetry shell with the `exit` command. -9. Add new tests depending on your changes. -10. Run `poetry run pytest` again to make sure your tests are also passed. -11. Commit your changes. This will trigger all pre-commit hooks as defined in `.pre-commit-config.yaml`. If any of these pre-hooks fails, your commit is declined and you have to fix the issues first. -12. Push your changes. -13. Create a PR. +### Dev env setup + +1. Install [miniforge](https://github.com/conda-forge/miniforge). +2. Create a new virtual environment using `conda`: Run `conda create -n pystatis python=3.11`. You can choose another Python version as long as it is supported by this package, see the pyproject.toml for supported Python versions. +3. Install [poetry](https://python-poetry.org/docs/) inside your conda environment: Run `conda install poetry`. +4. Clone the repository via git. +5. Change into the project root directory. +6. Run `poetry install` to install all dependencies into the current conda environment (run `poetry env info` to see the details of the current environment). Run `poetry install --with dev` to receive all additional developer dependencies. `poetry` has installed all dependencies for you, as well as the package `pystatis` itself. +7. Install pre-commit: Run `poetry run pre-commit install`. This will activate the pre-commit hooks that will run prior every commit to ensure code quality. + +### Workflow + +1. Check out the `dev` branch and make sure it is up to date by running `git pull`. +2. Create a new branch by running `git checkout -b ` or `git switch -c `. If possible, add an issue number to the branch name. +3. Do your changes. +4. Run `poetry run pytest` to see if all existing tests still run through. It is important to use `poetry run` to call `pytest` so that `poetry` uses the created virtual environment and not the system's default Python interpreter. Alternatively, you can run `poetry shell` to let `poetry` activate the virtual environment for the current session. Afterwards, you can run `pytest` as usual without any prefix. You can leave the poetry shell with the `exit` command. +5. Add new tests depending on your changes. +6. Run `poetry run pytest` again to make sure your tests are also passed. +7. Commit your changes. This will trigger all pre-commit hooks as defined in `.pre-commit-config.yaml`. If any of these pre-hooks fails, your commit is declined and you have to fix the issues first. +8. Before you create a PR make sure that you have the latest changes from dev. Run `git switch dev`, run `git pull`, switch back to your branch with `git switch -` and either do a `git rebase -i dev` or `git merge dev` to get the latest changes in your current working branch. Solve all merge conflicts. +9. Push your final changes. +10. Create a new PR, always against `dev` as target. To learn more about `poetry`, see [Dependency Management With Python Poetry](https://realpython.com/dependency-management-python-poetry/#command-reference) by realpython.com. From 5813fb045ff75cbfcc71179bd53506131b7d4b61 Mon Sep 17 00:00:00 2001 From: Michael Aydinbas Date: Wed, 25 Oct 2023 11:50:09 +0200 Subject: [PATCH 12/12] update readme --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 7427940..0411c2f 100644 --- a/README.md +++ b/README.md @@ -153,7 +153,7 @@ Contributions to this project are highly appreciated! You can either contact the 4. Push to remote (`git push origin feature/`) 5. Open a Pull Request to be merged with dev -## Developer information +## Contributor information To contribute to this project, please follow these steps: