fix cube functionality #43
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…s changed as well as DQA no longer has information about axis so we assume that the order is preserved
pmayd
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Jan 29, 2024
…s changed as well as DQA no longer has information about axis so we assume that the order is preserved (#43)
pmayd
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Feb 20, 2024
* Bump version to next major version #9 * Revert flake8 to ^3.0 for docstrings #9 * add a notebook that shows how to run init_config * Make dev dependencies optional, update lock and README #9 * Update workflow install --with dev, add matrix poetry version #9 * Fix python and poetry version definition #9 * Fix python and poetry version definition #9 * fix lock file * update dev dependencies and add python-dotenv to dev * improve readme * update readme * Feat/8 handle multiple databases and users (#20) * change config module to handle multiple databases * finalize work on config module to handle multiple databases; significantly reduced lines of code by getting rid of the settings.ini * add a new db module that serves as a layer between the user and the config. Can set the current active database and get the settings from the config * simplify config module * refactor code to implement new config; correct tests * fix all remaining tests * fix all text issues * update notebooks according to latest changes in config * drop support for Python 3.9 due to pipe operator for types and set supported versions to 3.10 and 3.11 * fix problem with config dir creation during setup * fix isort * Improve clear_cache output for full wipe, remove unused import * Address all non global-related pylint issues #20 * because of complexity get rid of the current support of custom config dir and always use the default config dir under user home. * fix all tests; get rid of settings.ini and functionality for user to define own config path; pystatis supports only default config path but custom data cache path * fix all tests; get rid of settings.ini and functionality for user to define own config path; pystatis supports only default config path but custom data cache path * refactor config module to work with a ConfigParser global config object instead of overwriting the config variable within the functions using global (bad style according to pylint) * address pylint issues * fix mypy issues * fix pylint issues --------- Co-authored-by: MarcoHuebner <marco_huebner1@gmx.de> * update README to the latest changes of multi database support * Added lists of all available statistics and tables * Feat/10 update and auto deploy sphinx (#27) * Updated dev-dependencies, added first version of Sphinx documentation, including built html documentation. * Added Logo, updated theme, updated GitHub workflow, fixed docstrings in cache and cube. Hosting on ReadTheDocs has to be done by Owner/ CorrelAid (but can be requested and triggered that way). * Updated urllib3 version, but everything <2.0.0 (deprecating `strict`) should be fine... * Updated poetry as recommended in cachecontrol issue report. * Fixed black formatting, fixed make docs (is now ran by poetry). * Fixed linting issue, updated packages, updated make docs. * Updated ReadMe, added developer sphinx documentation, added custom pre-commit hook and changed to hard-coded version in docs, added built documentation to artifacts, #3 * Add deployment workflow, needs Repo updates * Update depencies for Sphinx documentation #10 * Remove redundant docu information #10 Render parts of the README.md in the respective .rst files * Remove unused mdinclude, fix run-test py version, update pre-commit #10 * Fix dependency group for SPhinx workflow #10 * Fix docstring parameter rendering in Sphinx #10 * Fix image rendering by mimicking folder structure #10 * Add comment on warnings related to ext.napoleon #10 * Rename deploy-docs #10 * Fix black format issue in conf.py #10 * Update deploy key, add deploy trigger comment #10 * Update documentation deploy workflow #10 * Switch to matrix.os definition #10 * Fix pull_request target in deploy workflow #10 * Update poetry.lock #10 * Import package version to Sphinx docu #10 * Manually fix black formatting issue #10 * With auto-deploy working, decrease retention days #10 * Update readme and Sphinx header references #10 * Fix deploy to update files on the remote #10 * fix cube functionality: it seems like structure of QEI header part was changed as well as DQA no longer has information about axis so we assume that the order is preserved (#43) * add jupytext and new nb for presentation * Feat/35 implement regex matching (#44) * Implemented regex matching, initial commit * Added credentials check for cubes and removed all references to set_db() * Implemented regex matching, initial commit * Added credentials check for cubes and removed all references to set_db() * fix tests * refactoring Find and Result class to work with new database detection logic; because find does not use names like Table and Cube, use has to specify the database * fix tests --------- Co-authored-by: Michael Aydinbas <michael.aydinbas@gmail.com> Co-authored-by: Michael Aydinbas <michael.aydinbas@new-work.se> * add presentation nb * remove presentation nb for now * Feat/19 improve readability of the table format (#42) * Reformatting the raw data tables for readability * Adding comments * Applied suggested changes and run code formatting * add tests for Table --------- Co-authored-by: Michael Aydinbas <michael.aydinbas@new-work.se> * prepare Table so it can parse data from three different sources * Added description and examples of Find * implement parse logic for prettify zensus tables * fix pylint issues * edits on Find section * fixing overwritten changes * update presentation nb * add genesis parse code for regio, too, for the moment. * Feat/34 visualization examples (#48) * Add 02_Geo_visualization_example.ipynb * changed '-' to 0 instead of nan --> reproduce Simons result * new case study in visualization notebook, integration to presentation notebook * catch NA-values in read_csv and added Auspraegung_Code to table.py to have the unique region identifiers --------- Co-authored-by: jkrause <jkrause123@users.noreply.github.com> * final presentation nb and shape data; omit file check in pre-commit * fixed typo and beautified plots in presentation.ipynb /.py * add a first workaround for the new Zensus zip content type * fix all tests; separate Find and Results classes into own modules * update dependencies * update README * set version to 0.2 * remove Cubes from package for now; we no longer support cubes until they are requested * fix all tests; fix all relevant nb; * fix pylint issues * fix mypy issues * add documentation key * update changelog --------- Co-authored-by: MarcoHuebner <marco_huebner1@gmx.de> Co-authored-by: Pia <45008571+PiaSchroeder@users.noreply.github.com> Co-authored-by: MarcoHuebner <57489799+MarcoHuebner@users.noreply.github.com> Co-authored-by: zosiaboro <50183305+zosiaboro@users.noreply.github.com> Co-authored-by: Zosia Borowska <zofia.anna.borowska@gmail.com> Co-authored-by: jkrause123 <89632018+jkrause123@users.noreply.github.com> Co-authored-by: jkrause <jkrause123@users.noreply.github.com>
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It seems like structure of QEI header part was changed as well as DQA no longer has information about axis so we assume that the order is preserved
tested four cubes and they all worked, also fixed the tests by downloading two cubes and put the whole raw output from Postman as test documents under tests/src