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Brain Imaging Connectivity Extraction Program Solution

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README
README
 
 
bin/linux
bin/linux
 
 
gifti-1.6
gifti-1.6
 
 
tools
tools
 
 
.gitignore
.gitignore
 
 
GUI_environments_fix.m
GUI_environments_fix.m
 
 
GUI_environments_flexible.m
GUI_environments_flexible.m
 
 
INSTALL.md
INSTALL.md
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
ask_for_alternative_path_variance.m
ask_for_alternative_path_variance.m
 
 
ask_save_raw_timecourses.m
ask_save_raw_timecourses.m
 
 
biceps.fig
biceps.fig
 
 
biceps.m
biceps.m
 
 
biceps.prj
biceps.prj
 
 
change_permissions.m
change_permissions.m
 
 
check_exist_variance_file.m
check_exist_variance_file.m
 
 
compile.sh
compile.sh
 
 
connectotype_template.m
connectotype_template.m
 
 
count_remaining_frames.m
count_remaining_frames.m
 
 
createInstallationPrograms
createInstallationPrograms
 
 
find_parcellated_paths.m
find_parcellated_paths.m
 
 
get_frame_removal.m
get_frame_removal.m
 
 
get_variance_file.m
get_variance_file.m
 
 
has_variance_file.m
has_variance_file.m
 
 
isthisanoutlier.m
isthisanoutlier.m
 
 
local_wb_command_path.mat
local_wb_command_path.mat
 
 
make_file_censored_data.m
make_file_censored_data.m
 
 
make_filename_censored_data.m
make_filename_censored_data.m
 
 
make_hist_surv.m
make_hist_surv.m
 
 
make_model_based_env.m
make_model_based_env.m
 
 
make_no_autocorrelation_env.m
make_no_autocorrelation_env.m
 
 
make_outliers_mask.m
make_outliers_mask.m
 
 
make_std_env.m
make_std_env.m
 
 
make_text_FD_th.m
make_text_FD_th.m
 
 
make_text_survivors.m
make_text_survivors.m
 
 
make_wrapper_connectotype.m
make_wrapper_connectotype.m
 
 
matlab_mb_template.m
matlab_mb_template.m
 
 
mccExcludedFiles.log
mccExcludedFiles.log
 
 
plot_motion_1d.m
plot_motion_1d.m
 
 
quotes_if_space.m
quotes_if_space.m
 
 
read_TR_MC_none.m
read_TR_MC_none.m
 
 
read_cifti_via_csv.m
read_cifti_via_csv.m
 
 
read_motion_data.m
read_motion_data.m
 
 
read_participants_and_paths.m
read_participants_and_paths.m
 
 
requiredMCRProducts.txt
requiredMCRProducts.txt
 
 
run_GUI_environments.sh
run_GUI_environments.sh
 
 
run_connectotype.sh
run_connectotype.sh
 
 
run_make_model_template.bat
run_make_model_template.bat
 
 
settings_make_par_env.m
settings_make_par_env.m
 
 
settings_make_par_env_exasynced.m
settings_make_par_env_exasynced.m
 
 
sort_RS_GUI_environments.m
sort_RS_GUI_environments.m
 
 
template_run_make_model.bat
template_run_make_model.bat
 
 
text_after_reading_path.m
text_after_reading_path.m
 
 
update_paths.m
update_paths.m
 
 
validate_path_wb_command.m
validate_path_wb_command.m
 
 
validating_outputs.m
validating_outputs.m
 
 

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Brain Imaging Connectivity Extraction Program Solution

BICEPS installation directions are given in INSTALL.

See README.m for instructions on how to use BICEPS.

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Brain Imaging Connectivity Extraction Program Solution

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BSD-3-Clause license
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BICEPS First release Latest
Mar 3, 2023

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