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environment.yaml
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name: RNAseqWorkflow_4
channels:
- bioconda
- conda-forge
- defaults
- bioconda-legacy
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_llvm
- _r-mutex=1.0.1=anacondar_1
- arriba=2.2.1=h3198e80_0
- bcftools=1.12=h45bccc9_1
- bioconductor-affy=1.56.0=r3.4.1_0
- bioconductor-affyio=1.50.0=r341h470a237_0
- bioconductor-annotate=1.58.0=r341_0
- bioconductor-annotationdbi=1.42.1=r341_0
- bioconductor-aroma.light=3.10.0=r341_0
- bioconductor-biobase=2.40.0=r341h470a237_0
- bioconductor-biocgenerics=0.26.0=r341_0
- bioconductor-biocinstaller=1.28.0=r341_1
- bioconductor-biocparallel=1.14.2=r341h26a2512_0
- bioconductor-biostrings=2.48.0=r341h470a237_0
- bioconductor-bsgenome=1.46.0=r3.4.1_0
- bioconductor-delayedarray=0.6.6=r341_0
- bioconductor-dnacopy=1.54.0=r341ha44fe06_0
- bioconductor-edger=3.22.5=r341hfc679d8_0
- bioconductor-genefilter=1.62.0=r341h26a2512_0
- bioconductor-genomeinfodb=1.16.0=r341_0
- bioconductor-genomeinfodbdata=1.1.0=r341_0
- bioconductor-genomicalignments=1.14.1=r3.4.1_0
- bioconductor-genomicranges=1.32.7=r341h470a237_0
- bioconductor-iranges=2.14.12=r341h470a237_0
- bioconductor-limma=3.36.5=r341h470a237_0
- bioconductor-noiseq=2.24.0=r341_0
- bioconductor-preprocesscore=1.42.0=r341h470a237_0
- bioconductor-repitools=1.24.0=r3.4.1_0
- bioconductor-ringo=1.42.0=r3.4.1_0
- bioconductor-rsamtools=1.32.3=r341hfc679d8_0
- bioconductor-rtracklayer=1.38.3=r3.4.1_0
- bioconductor-s4vectors=0.18.3=r341h470a237_0
- bioconductor-summarizedexperiment=1.10.1=r341_0
- bioconductor-vsn=3.46.0=r3.4.1_0
- bioconductor-xvector=0.20.0=r341h470a237_0
- bioconductor-zlibbioc=1.26.0=r341h470a237_0
- bzip2=1.0.8=h516909a_2
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2021.10.8=ha878542_0
- cairo=1.14.12=he6fea26_5
- certifi=2019.11.28=py27h8c360ce_1
- curl=7.76.1=h979ede3_1
- fontconfig=2.13.1=h2176d3f_1000
- freetype=2.9.1=h3cfcefd_1004
- gettext=0.19.8.1=hc5be6a0_1002
- glib=2.55.0=h464dc38_2
- graphite2=1.3.13=hf484d3e_1000
- gsl=2.6=he838d99_2
- harfbuzz=1.9.0=h08d66d9_0
- hdf5=1.10.5=nompi_h5b725eb_1114
- htslib=1.12=h9093b5e_1
- icu=58.2=hf484d3e_1000
- jpeg=9c=h14c3975_1001
- kallisto=0.46.0=h4f7b962_1
- krb5=1.17.1=h2fd8d38_0
- libblas=3.9.0=13_linux64_openblas
- libcblas=3.9.0=13_linux64_openblas
- libcurl=7.76.1=hc4aaa36_1
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20170329=0
- libev=4.33=h516909a_1
- libffi=3.2.1=he1b5a44_1006
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=11.2.0=h1d223b6_12
- libgfortran=3.0.0=1
- libgfortran-ng=11.2.0=h69a702a_12
- libgfortran5=11.2.0=h5c6108e_12
- libiconv=1.15=h516909a_1005
- libidn2=2.3.0=h516909a_0
- libnghttp2=1.43.0=h812cca2_1
- libopenblas=0.3.18=pthreads_h8fe5266_0
- libpng=1.6.34=ha92aebf_2
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=11.2.0=he4da1e4_12
- libtiff=4.0.9=h648cc4a_1002
- libunistring=0.9.10=h14c3975_0
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=h13577e0_2
- llvm-openmp=9.0.1=hc9558a2_2
- ncurses=5.9=10
- openjdk=7.0.161=zulu7.21.0.3_0
- openssl=1.1.1l=h7f98852_0
- pango=1.40.14=h53a7087_1002
- pcre=8.39=0
- perl=5.26.2=h516909a_1006
- pip=20.0.2=py_2
- pixman=0.34.0=h14c3975_1003
- pthread-stubs=0.4=h14c3975_1001
- python=2.7.15=h721da81_1008
- python_abi=2.7=1_cp27mu
- qualimap=2.2.2a=3
- r=3.4.1=r3.4.1_0
- r-aroma.affymetrix=3.1.1=r341h6115d3f_0
- r-aroma.apd=0.6.0=r341_1
- r-aroma.core=3.1.3=r341h6115d3f_0
- r-assertthat=0.2.0=r341h6115d3f_1
- r-base=3.4.1=4
- r-base64enc=0.1_3=r341hc070d10_2
- r-bh=1.66.0_1=r341_1001
- r-bit=1.1_12=r341h470a237_2
- r-bit64=0.9_7=r341hc070d10_0
- r-bitops=1.0_6=r341hc070d10_2
- r-blob=1.1.1=r341_1
- r-boot=1.3_20=r341_0
- r-catools=1.17.1.1=r341h9d2a408_2
- r-circlize=0.4.4=r341_1
- r-class=7.3_14=r341hc070d10_2
- r-cluster=2.0.7_1=r341h364d78e_0
- r-codetools=0.2_15=r341h6115d3f_1
- r-colorspace=1.3_2=r341hc070d10_2
- r-dbi=1.0.0=r341h6115d3f_1
- r-digest=0.6.18=r341hc070d10_0
- r-foreign=0.8_71=r341hc070d10_2
- r-formatr=1.5=r341h6115d3f_1
- r-futile.logger=1.4.3=r341h6115d3f_1
- r-futile.options=1.0.1=r341h6115d3f_0
- r-future=1.9.0=r341h6115d3f_1
- r-future.apply=1.0.1=r341h6115d3f_0
- r-gdata=2.18.0=r341h6115d3f_1
- r-getopt=1.20.2=r341_1
- r-ggplot2=3.1.0=r341h6115d3f_0
- r-globaloptions=0.1.0=r341_1
- r-globals=0.12.2=r341h6115d3f_0
- r-glue=1.3.0=r341h470a237_2
- r-gplots=3.0.1=r341h6115d3f_1
- r-gsmoothr=0.1.7=r341hc070d10_2
- r-gtable=0.2.0=r341h6115d3f_1
- r-gtools=3.8.1=r341hc070d10_2
- r-kernsmooth=2.23_15=r341h364d78e_2
- r-labeling=0.3=r341h6115d3f_1
- r-lambda.r=1.2.3=r341h6115d3f_0
- r-lattice=0.20_35=r341hc070d10_0
- r-lazyeval=0.2.1=r341hc070d10_2
- r-listenv=0.7.0=r341h6115d3f_1
- r-locfit=1.5_9.1=r341h470a237_2
- r-magrittr=1.5=r341h6115d3f_1
- r-mass=7.3_50=r341hc070d10_2
- r-matrix=1.2_14=r341hc070d10_2
- r-matrixstats=0.54.0=r341hc070d10_0
- r-memoise=1.1.0=r341h6115d3f_1
- r-mgcv=1.8_24=r341hc070d10_2
- r-munsell=0.5.0=r341h6115d3f_1
- r-nlme=3.1_137=r341h364d78e_0
- r-nnet=7.3_12=r341hc070d10_2
- r-optparse=1.6.0=r341_1
- r-pkgconfig=2.0.2=r341h6115d3f_1
- r-plogr=0.2.0=r341h6115d3f_1
- r-plyr=1.8.4=r341h9d2a408_2
- r-prettyunits=1.0.2=r341h6115d3f_1
- r-pscbs=0.64.0=r341h6115d3f_0
- r-r.cache=0.13.0=r341h6115d3f_1
- r-r.devices=2.16.0=r341h6115d3f_0
- r-r.filesets=2.12.1=r341h6115d3f_1
- r-r.huge=0.9.0=r341_1
- r-r.methodss3=1.7.1=r341h6115d3f_1
- r-r.oo=1.22.0=r341h6115d3f_0
- r-r.rsp=0.43.0=r341h6115d3f_0
- r-r.utils=2.7.0=r341h6115d3f_0
- r-r6=2.2.2=r341h6115d3f_1
- r-rcolorbrewer=1.1_2=r341h6115d3f_1
- r-rcpp=1.0.0=r341h9d2a408_0
- r-rcurl=1.95_4.11=r341hc070d10_3
- r-recommended=3.4.1=r3.4.1_0
- r-reshape2=1.4.3=r341h9d2a408_2
- r-rlang=0.3.0.1=r341h470a237_0
- r-rpart=4.1_13=r341hc070d10_2
- r-rsolnp=1.16=r341_1
- r-rsqlite=2.1.1=r341h9d2a408_0
- r-scales=1.0.0=r341h9d2a408_1
- r-shape=1.4.4=r341_1
- r-snow=0.4_3=r341h6115d3f_0
- r-spatial=7.3_11=r341hc070d10_2
- r-stringi=1.2.4=r341h9d2a408_1
- r-stringr=1.3.1=r341h6115d3f_1
- r-survival=2.42_6=r341hc070d10_1
- r-tibble=1.3.3=r3.4.1_0
- r-truncnorm=1.0_8=r341hc070d10_0
- r-viridislite=0.3.0=r341h6115d3f_1
- r-withr=2.1.2=r341h6115d3f_0
- r-xml=3.98_1.16=r341hc070d10_0
- r-xtable=1.8_3=r341_1000
- readline=7.0=0
- rna-seqc=1.1.8=1
- sambamba=0.6.5=0
- samtools=1.9=h46bd0b3_0
- setuptools=44.0.0=py27_0
- sqlite=3.26.0=h7b6447c_0
- star=2.7.10a=h9ee0642_0
- subread=1.6.4=h84994c4_1
- tk=8.6.10=hed695b0_0
- wget=1.20.1=h22169c7_0
- wheel=0.34.2=py_1
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.9=h516909a_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.5=h516909a_1
- zlib=1.2.11=h516909a_1006